Rroxscaffold_1G00016250

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000340
Physical Location & Seq
Reverse (-)
20242688 .. 20246716
4029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016250.1

Sequence Viewer

Length: 1119 bp
ATGTCTCACAGATCAGAAGAAATGGATATCGGAAAACTGCAACAAAATGCTCGTGACCATCTTGAAAAGGCCTTCTTGGAGCAAGGCAAAGCCTTTTTAAAATCTGAAGGGCAAAAGAATGATCTTAAGAAAAAGCTTGAACAGAATGAGGCTCAAAAGAAAGATCTGCAGAAAAAGCTTGAGCAGAGTGAATCCCACAAGAGAGAGCTTGAGAAGATTGAAGAAGCTCAAAAGAGCGAACTTAAGAAGGCGCTTGAGCAGATTGAAGCTCAAAAGAAAATCTTTGAGCAGCGCGAGATGAAATTAAAACAAATGCAGGAGAGGGTTAATATTGAGCAGAGGAAGGCTACTGAAAATTTGTTAAAAGAAAAGAAAGAAAATGAGGAGCTCCGGAACAAGATCACTGAGTTGGAGGATCGGAAGAATCAAGTTCAGGATGAGGAGGATTTAGATGATGAGTCTGAGGACGAGCATGAAGAGATGGGTGAAATTCGAGAAAAGTTAAAGGAGAAAGAAGAAGAGCTGGCCAATGTTGAAGCTCTAAACAACACACTTATTGTCAAGGAGCTTAAAAGCAACACTGAACTGCAGGAGGCTCGTAGAGAGATAATCAGAGGATGGGAATCAGCAAGTCGTGCTTTTATTGGTGTCAAGAGAATGGGAGAGCTTGACAGCAAACCATTTCAGACTGCATGCAAGAGAAAATATAATACAGAAGAAGCAGATGACCAGGCAGCAGCACTATGTTCTCTATGGGAGGATTATATTAAGGATTCAAGCTGGCATCCATTCAAAACTAGCAAGGATTCCTTTGGACATTGTAAGGAGATTATTGATGAAGAAGATGAAAAATTGAAAAAGTTAAAGAACGAGTTTGGTGCTGAAGTTCATCTGGCTGTGTCAACTGCTTTGCTGGAATTGAATGAGTATAATCCCAGTGGTAGGTATGCAATTAAAGAACTATGGAACTTCAATCAAGATAGAAGGGCATCATTAAAAGAGGGAATATTGCATCTCCCTGAAGCAGTTGAAACTGCAAAAGAGGAGAAGAACCTCATGAAGGTTATGACCACATCCTGTTGTCCAAAATTTCAGAGTAGGGGATTGTCTCGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

372

Amino Acids

43.63

Weight (kDa)

5.39

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 218 - 347 6.3e-52 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 390
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 3 cut(s) 355, 489, 1088
AcuI CTGAAG 3 cut(s) 126, 903, 1041
AfiI CCNNNNNNNGG 2 cut(s) 942, 1060
AflII CTTAAG 2 cut(s) 125, 242
AjnI CCWGG 1 cut(s) 729
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 2 cut(s) 9, 1113
AlwI GGATC 1 cut(s) 423
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 1 cut(s) 390
AoxI GGCC 2 cut(s) 69, 525
ApeKI GCWGC 3 cut(s) 289, 734, 737
ApoI RAATTY 3 cut(s) 355, 489, 1088
AspLEI GCGC 2 cut(s) 253, 294
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 1110
BalI TGGCCA 1 cut(s) 527
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 301, 746, 749
BccI CCATC 3 cut(s) 66, 475, 612
BcgI CGANNNNNNTGC 4 cut(s) 578, 612, 860, 894
BciT130I CCWGG 1 cut(s) 731
BcoDI GTCTC 2 cut(s) 9, 1113
BfaI CTAG 1 cut(s) 798
BfmI CTRYAG 2 cut(s) 167, 587
BfoI RGCGCY 1 cut(s) 254
BfrI CTTAAG 2 cut(s) 125, 242
BglII AGATCT 1 cut(s) 163
BisI GCNGC 3 cut(s) 290, 735, 738
BlsI GCNGC 3 cut(s) 291, 736, 739
Bme1390I CCNGG 1 cut(s) 731
BmeT110I CYCGRG 1 cut(s) 1110
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 3 cut(s) 793, 998, 1021
BmuI ACTGGG 1 cut(s) 930
BpuEI CTTGAG 3 cut(s) 200, 230, 275
BsaBI GATNNNNATC 1 cut(s) 622
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 2 cut(s) 942, 1060
Bse1I ACTGG 1 cut(s) 936
Bse8I GATNNNNATC 1 cut(s) 622
BseAI TCCGGA 1 cut(s) 390
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 4 cut(s) 442, 623, 784, 1073
BseJI GATNNNNATC 1 cut(s) 622
BseLI CCNNNNNNNGG 2 cut(s) 942, 1060
BseMII CTCAG 2 cut(s) 396, 453
BseNI ACTGG 1 cut(s) 936
BseRI GAGGAG 3 cut(s) 398, 455, 1058
BseXI GCAGC 3 cut(s) 301, 746, 749
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 71, 527
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 942, 1060
BsmAI GTCTC 2 cut(s) 9, 1113
BsnI GGCC 2 cut(s) 71, 527
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 1 cut(s) 390
Bsp13I TCCGGA 1 cut(s) 390
Bsp143I GATC 5 cut(s) 11, 121, 163, 399, 415
BspANI GGCC 2 cut(s) 71, 527
BspCNI CTCAG 2 cut(s) 397, 454
BspEI TCCGGA 1 cut(s) 390
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 1056
BspMAI CTGCAG 2 cut(s) 171, 591
BspPI GGATC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 513
BspTI CTTAAG 2 cut(s) 125, 242
BsrI ACTGG 1 cut(s) 936
BssMI GATC 5 cut(s) 11, 121, 163, 399, 415
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 731
Bst6I CTCTTC 2 cut(s) 471, 513
BstAFI CTTAAG 2 cut(s) 125, 242
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 525, 694, 782
BstDEI CTNAG 2 cut(s) 405, 462
BstENI CCTNNNNNAGG 1 cut(s) 1058
BstF5I GGATG 4 cut(s) 442, 623, 784, 1073
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 2 cut(s) 253, 294
BstKTI GATC 5 cut(s) 14, 124, 166, 402, 418
BstMAI GTCTC 2 cut(s) 9, 1113
BstMBI GATC 5 cut(s) 11, 121, 163, 399, 415
BstMWI GCNNNNNNNGC 2 cut(s) 175, 635
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 2 cut(s) 167, 587
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 301, 746, 749
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 2 cut(s) 71, 527
BtsCI GGATG 4 cut(s) 442, 623, 784, 1073
BtsIMutI CAGTG 3 cut(s) 402, 579, 943
Cac8I GCNNGC 3 cut(s) 525, 694, 782
CciI TCATGA 1 cut(s) 1056
CfoI GCGC 2 cut(s) 253, 294
CviAII CATG 3 cut(s) 473, 693, 1057
DdeI CTNAG 2 cut(s) 405, 462
DpnI GATC 5 cut(s) 13, 123, 165, 401, 417
DpnII GATC 5 cut(s) 11, 121, 163, 399, 415
DraI TTTAAA 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 471, 513
EarI CTCTTC 2 cut(s) 471, 513
Ecl136II GAGCTC 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 3 cut(s) 126, 903, 1041
Eco88I CYCGRG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 1058
EcoRII CCWGG 1 cut(s) 729
EcoRV GATATC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 3 cut(s) 476, 696, 1060
FalI AAGNNNNNCTT 8 cut(s) 59, 91, 266, 298, 622, 654, 794, 826
FatI CATG 3 cut(s) 472, 692, 1056
Fnu4HI GCNGC 3 cut(s) 290, 735, 738
FokI GGATG 4 cut(s) 449, 630, 771, 1060
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 290, 735, 738
FspBI CTAG 1 cut(s) 798
GlaI GCGC 2 cut(s) 252, 293
GluI GCNGC 3 cut(s) 290, 735, 738
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 2 cut(s) 71, 527
HapII CCGG 1 cut(s) 391
HhaI GCGC 2 cut(s) 253, 294
Hin1II CATG 3 cut(s) 476, 696, 1060
Hin6I GCGC 2 cut(s) 251, 292
HinP1I GCGC 2 cut(s) 251, 292
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 2 cut(s) 134, 176
HinfI GANTC 6 cut(s) 191, 424, 458, 623, 773, 806
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 903
Hpy188I TCNGA 8 cut(s) 16, 32, 106, 420, 463, 614, 687, 1095
Hpy8I GTNNAC 1 cut(s) 903
HpyAV CCTTC 6 cut(s) 82, 101, 241, 337, 978, 1054
HpyCH4V TGCA 9 cut(s) 40, 169, 316, 589, 692, 696, 950, 1012, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 635
HpyF3I CTNAG 2 cut(s) 405, 462
Hsp92II CATG 3 cut(s) 476, 696, 1060
HspAI GCGC 2 cut(s) 251, 292
Kpn2I TCCGGA 1 cut(s) 390
Kzo9I GATC 5 cut(s) 11, 121, 163, 399, 415
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 4 cut(s) 79, 385, 393, 565
Lsp1109I GCAGC 3 cut(s) 301, 746, 749
LweI GCATC 3 cut(s) 793, 998, 1021
MaeI CTAG 1 cut(s) 798
MaeIII GTNAC 1 cut(s) 53
MalI GATC 5 cut(s) 13, 123, 165, 401, 417
MboI GATC 5 cut(s) 11, 121, 163, 399, 415
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 7 cut(s) 302, 355, 489, 851, 917, 951, 1088
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 390
Mox20I TGGCCA 1 cut(s) 527
MroI TCCGGA 1 cut(s) 390
MscI TGGCCA 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 527
MspCI CTTAAG 2 cut(s) 125, 242
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 731
MvaI CCWGG 1 cut(s) 731
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 175, 635
NdeII GATC 5 cut(s) 11, 121, 163, 399, 415
NlaIII CATG 3 cut(s) 476, 696, 1060
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 696
PaeI GCATGC 1 cut(s) 696
PaeR7I CTCGAG 1 cut(s) 1110
PagI TCATGA 1 cut(s) 1056
PceI AGGCCT 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 513
PfeI GAWTC 5 cut(s) 191, 424, 623, 773, 806
PkrI GCNGC 3 cut(s) 291, 736, 739
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PstI CTGCAG 2 cut(s) 171, 591
PsuI RGATCY 1 cut(s) 163
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 513
SatI GCNGC 3 cut(s) 290, 735, 738
Sau3AI GATC 5 cut(s) 11, 121, 163, 399, 415
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 3 cut(s) 793, 998, 1021
SfcI CTRYAG 2 cut(s) 167, 587
Sfr274I CTCGAG 1 cut(s) 1110
SlaI CTCGAG 1 cut(s) 1110
SmlI CTYRAG 6 cut(s) 125, 179, 209, 242, 254, 1110
SmoI CTYRAG 6 cut(s) 125, 179, 209, 242, 254, 1110
SphI GCATGC 1 cut(s) 696
Sse9I AATT 7 cut(s) 302, 355, 489, 851, 917, 951, 1088
SseBI AGGCCT 1 cut(s) 71
SspI AATATT 2 cut(s) 331, 1008
SspMI CTAG 1 cut(s) 798
SstI GAGCTC 1 cut(s) 390
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 729
TaqI TCGA 2 cut(s) 493, 1111
TasI AATT 7 cut(s) 302, 355, 489, 851, 917, 951, 1088
TfiI GAWTC 5 cut(s) 191, 424, 623, 773, 806
TscAI CASTG 3 cut(s) 409, 586, 943
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 3 cut(s) 289, 734, 737
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 6 cut(s) 314, 489, 852, 861, 878, 1073
TspRI CASTG 3 cut(s) 409, 586, 943
Vha464I CTTAAG 2 cut(s) 125, 242
XagI CCTNNNNNAGG 1 cut(s) 1058
XapI RAATTY 3 cut(s) 355, 489, 1088
XceI RCATGY 1 cut(s) 696
XhoI CTCGAG 1 cut(s) 1110
XspI CTAG 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.