Rh4BG040500

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000340
Physical Location & Seq
Forward (+)
7280017 .. 7281045
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG040500.1

Sequence Viewer

Length: 384 bp
ATGATTGACCAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACAAAAGAACATTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGTTGGAGCACTGCCGCAAGGAGCTACAGCATATGAAGAAGGCAGAAAATCTGATAACGCTGGCAGAAAAGAGAAAGAGAAAAAATGAGAAGTTTCACTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGATGAATATTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGCAGGAGCTTACTGATCTATCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGGCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

15.31

Weight (kDa)

5.65

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000340)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01090 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g24990 FvH4_3g36251 FvH4_3g36251 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36252 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_3g36253 FvH4_7g32330
prunus_persica Prupe.6G075600_v2.0.a1 Prupe.6G075700_v2.0.a1
pyrus_communis pycom01g15630
rosa_chinensis RchiOBHm_Chr2g0085841 RchiOBHm_Chr5g0044861 RchiOBHm_Chr5g0044871 RchiOBHm_Chr5g0044881 RchiOBHm_Chr5g0044991 RchiOBHm_Chr5g0045031 RchiOBHm_Chr5g0045041 RchiOBHm_Chr5g0057601 RchiOBHm_Chr5g0062541 RchiOBHm_Chr5g0065071
rosa_laevigata RLG00000002367 RLG00000015724 RLG00000019361 RLG00000034303 RLG00000034306 RLG00000034309 RLG00000034314 RLG00000034321 RLG00000035772 RLG00000035776
rosa_multiflora Rmu_co8361081.1_g000001 Rmu_co8459613.1_g000001 Rmu_sc0001648.1_g000038 Rmu_sc0001648.1_g000049 Rmu_sc0001748.1_g000010 Rmu_sc0002915.1_g000019 Rmu_sc0003352.1_g000043 Rmu_sc0004567.1_g000020 Rmu_sc0004720.1_g000006 Rmu_sc0004730.1_g000006 Rmu_sc0007421.1_g000010 Rmu_sc0008894.1_g000003 Rmu_sc0009359.1_g000002 Rmu_sc0015213.1_g000016
rosa_roxburghii Rroxscaffold_1G00015930 Rroxscaffold_1G00016050 Rroxscaffold_1G00016250 Rroxscaffold_1G00036100 Rroxscaffold_1G00036110 Rroxscaffold_1G00036180 Rroxscaffold_2G00154970 Rroxscaffold_7G00201680
rosa_rugosa Rorug01G0463800 Rorug01G0463900 Rorug01G0464000.1 Rorug01G0464100 Rorug01G0464100 Rorug01G0464200 Rorug01G0464200 Rorug02G0276400 Rorug05G0219500 Rorug05G0219600 Rorug05G0219600 Rorug05G0219800 Rorug05G0220200 Rorug05G0369900 Rorug05G0370000
rosa_samantha Rh1AG259700 Rh2BG013700 Rh2BG456700 Rh2CG014100 Rh2DG015400 Rh2DG466500 Rh4BG040500 Rh5AG273800 Rh5AG301300 Rh5AG301900 Rh5AG426100 Rh5AG428500 Rh5BG308600 Rh5BG309600 Rh5BG443600 Rh5CG335400 Rh5CG335700 Rh5CG335900 Rh5CG336200 Rh5CG411400 Rh5CG411500 Rh5CG464000 Rh5CG465900 Rh6DG082100
rosa_wichuraiana Rw2G001140 Rw5G027930 Rw5G040030 Rw5G040210 Rw5G040230 Rw6G016420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 320
AgsI TTSAA 6 cut(s) 41, 56, 200, 205, 275, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 6 cut(s) 13, 37, 112, 214, 304, 367
AluI AGCT 6 cut(s) 13, 37, 112, 214, 304, 367
Alw21I GWGCWC 1 cut(s) 99
AoxI GGCC 2 cut(s) 249, 376
ApaI GGGCCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 250, 376, 377
BaeGI GKGCMC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 354
BfmI CTRYAG 2 cut(s) 113, 368
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 2 cut(s) 103, 368
BlsI GCNGC 2 cut(s) 104, 369
BmgT120I GGNCC 3 cut(s) 250, 376, 377
BmiI GGNNCC 2 cut(s) 377, 378
BmsI GCATC 1 cut(s) 40
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 2 cut(s) 251, 378
BsiHKAI GWGCWC 1 cut(s) 99
BsnI GGCC 2 cut(s) 251, 378
Bsp120I GGGCCC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 99, 380
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 251, 378
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 377, 378
BspMAI CTGCAG 1 cut(s) 372
BssMI GATC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 187
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSFI CTRYAG 2 cut(s) 113, 368
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 251, 378
BtsI GCAGTG 2 cut(s) 97, 237
BtsIMutI CAGTG 3 cut(s) 97, 237, 332
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 3 cut(s) 250, 376, 377
CviJI RGCY 9 cut(s) 13, 37, 112, 214, 221, 251, 304, 367, 378
CviKI_1 RGCY 9 cut(s) 13, 37, 112, 214, 221, 251, 304, 367, 378
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 380
FaiI YATR 4 cut(s) 16, 77, 120, 122
FauNDI CATATG 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 103, 368
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 103, 368
GluI GCNGC 2 cut(s) 103, 368
HaeIII GGCC 2 cut(s) 251, 378
HinfI GANTC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 69, 141, 190, 319
HpyAV CCTTC 2 cut(s) 121, 286
HpyCH4V TGCA 2 cut(s) 332, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 187
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 6 cut(s) 94, 109, 219, 295, 301, 351
LpnPI CCDG 7 cut(s) 23, 134, 212, 224, 266, 284, 356
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 40
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 99, 380
MluCI AATT 4 cut(s) 56, 195, 200, 320
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 3 cut(s) 232, 241, 342
MseI TTAA 2 cut(s) 264, 284
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeI CATATG 1 cut(s) 120
NdeII GATC 1 cut(s) 310
NlaIV GGNNCC 2 cut(s) 377, 378
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 104, 369
PspN4I GGNNCC 2 cut(s) 377, 378
PspOMI GGGCCC 1 cut(s) 376
PspPI GGNCC 3 cut(s) 250, 376, 377
PstI CTGCAG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 264, 284
SatI GCNGC 2 cut(s) 103, 368
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 3 cut(s) 250, 376, 377
SduI GDGCHC 2 cut(s) 99, 380
SetI ASST 6 cut(s) 15, 39, 114, 216, 306, 369
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 2 cut(s) 113, 368
Sse9I AATT 4 cut(s) 56, 195, 200, 320
SsiI CCGC 1 cut(s) 103
SspI AATATT 1 cut(s) 262
TasI AATT 4 cut(s) 56, 195, 200, 320
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 264, 284
Tru9I TTAA 2 cut(s) 264, 284
TscAI CASTG 3 cut(s) 104, 237, 339
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 92, 137, 272
TspRI CASTG 3 cut(s) 104, 237, 339
XapI RAATTY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.