FvH4_2g03910

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000620
Physical Location & Seq
Forward (+)
3100985 .. 3102423
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03910.t1

Sequence Viewer

Length: 684 bp
ATGCAAATAATTGGTTTTGTTTTTGATTCATCCACTAGTGAATGTAAAGTGGCATATTGTTATAAGAATAAGGAGGGTGACTTTGGCCATGAAGTAGGGTTTAAAGTTCTAAGTATTGGAAAGGATGATGAATGGAGGACCCTGAAGCTGCCCAACAAACATCAAGAATGGGTGCTGGAAAGACGTGATATGATAGCATTTATAGATGAAGGGGTAGCTCATTCGATGGAAATTATTAGAGTCGGAGAAGATTTGAAGATAGAAGTTGTATCACTTGATATATGGAGTGAATGTTTCACCGTTACCACTGTGCCTCAGAGAGGTTTCGCAGACTTGCATAGAGTTTCTATTCTTCGTTGGATTGAAACAATAGCTGTTGCTGATATAGTAGGAGAAGCCCTTAACGTCTTGGTGTTACAAGACTTGGAGGAGCAGAAATGGAGTAAGATCACTGTTCCCTTGAAGTTTTTGAAGGACGACCCAGTTTTGAAAGATCAAATTCAACCTATTGTAGCTACTACGTTTGATGAACTCCAGTTCAACAATGCAGTGAGAAATAATGTTTTTCTATATGATATGAAACAGGAGATGATTAAGGTCACACTTACAAAGTCCACAGAGAAATTTATTACTTTTTGCGAGCCAAGCCTGGTCACTCTTAAGGGAATGAAGAAGGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

228

Amino Acids

26.15

Weight (kDa)

5.08

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 6 - 207 1.9e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 2 cut(s) 498, 623
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 320
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 7 cut(s) 256, 365, 463, 472, 490, 503, 541
AhlI ACTAGT 1 cut(s) 35
AjiI CACGTC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 4 cut(s) 148, 218, 374, 515
AluI AGCT 4 cut(s) 148, 218, 374, 515
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 2 cut(s) 498, 623
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 89, 289
AvaII GGWCC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 87
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 650
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 659
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 650
Bme18I GGWCC 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 650
BmrI ACTGGG 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 482, 535
BseBI CCWGG 1 cut(s) 650
BseGI GGATG 2 cut(s) 29, 130
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 482, 535
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 447, 493
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 659
BsrI ACTGG 2 cut(s) 482, 535
BssMI GATC 2 cut(s) 447, 493
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 3 cut(s) 301, 310, 454
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 110, 315
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 29, 130
BstKTI GATC 2 cut(s) 450, 496
BstMBI GATC 2 cut(s) 447, 493
BstMWI GCNNNNNNNGC 1 cut(s) 645
BstNI CCWGG 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 87
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 29, 130
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 3 cut(s) 306, 450, 555
Cac8I GCNNGC 1 cut(s) 641
Cfr13I GGNCC 1 cut(s) 138
CviAII CATG 1 cut(s) 89
CviJI RGCY 8 cut(s) 87, 148, 218, 374, 398, 515, 643, 648
CviKI_1 RGCY 8 cut(s) 87, 148, 218, 374, 398, 515, 643, 648
DdeI CTNAG 2 cut(s) 110, 315
DpnI GATC 2 cut(s) 449, 495
DpnII GATC 2 cut(s) 447, 493
DraI TTTAAA 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 648
FaeI CATG 1 cut(s) 92
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 2 cut(s) 16, 137
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 1 cut(s) 87
Hin1II CATG 1 cut(s) 92
HinfI GANTC 2 cut(s) 26, 240
HphI GGTGA 2 cut(s) 89, 289
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 2 cut(s) 245, 318
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 615
HpyAV CCTTC 3 cut(s) 203, 466, 667
HpyCH4III ACNGT 3 cut(s) 301, 310, 454
HpyCH4IV ACGT 3 cut(s) 184, 405, 521
HpyCH4V TGCA 3 cut(s) 4, 337, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 645
HpyF3I CTNAG 2 cut(s) 110, 315
HpySE526I ACGT 3 cut(s) 184, 405, 521
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 2 cut(s) 447, 493
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 7 cut(s) 155, 161, 495, 548, 569, 635, 662
Lsp1109I GCAGC 1 cut(s) 135
MaeI CTAG 1 cut(s) 36
MaeII ACGT 3 cut(s) 184, 405, 521
MaeIII GTNAC 5 cut(s) 77, 301, 414, 598, 652
MalI GATC 2 cut(s) 449, 495
MboI GATC 2 cut(s) 447, 493
MboII GAAGA 4 cut(s) 260, 268, 344, 682
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 4 cut(s) 9, 231, 498, 623
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 223, 338
MnlI CCTC 5 cut(s) 67, 129, 314, 324, 421
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MseI TTAA 4 cut(s) 102, 402, 594, 660
Msp20I TGGCCA 1 cut(s) 87
MspCI CTTAAG 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 650
MvaI CCWGG 1 cut(s) 650
MwoI GCNNNNNNNGC 1 cut(s) 645
NdeII GATC 2 cut(s) 447, 493
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 3 cut(s) 77, 598, 652
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 138
PsiI TTATAA 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 138
PspPPI RGGWCCY 1 cut(s) 138
SaqAI TTAA 4 cut(s) 102, 402, 594, 660
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 447, 493
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 650
SinI GGWCC 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 4 cut(s) 9, 231, 498, 623
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 648
TaaI ACNGT 3 cut(s) 301, 310, 454
TaiI ACGT 3 cut(s) 187, 408, 524
TaqI TCGA 1 cut(s) 224
TasI AATT 4 cut(s) 9, 231, 498, 623
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 4 cut(s) 102, 402, 594, 660
Tru9I TTAA 4 cut(s) 102, 402, 594, 660
TscAI CASTG 3 cut(s) 313, 457, 555
TseFI GTSAC 3 cut(s) 77, 598, 652
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 3 cut(s) 77, 598, 652
TspDTI ATGAA 7 cut(s) 18, 105, 144, 222, 543, 593, 683
TspRI CASTG 3 cut(s) 313, 457, 555
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 138
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 2 cut(s) 498, 623
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.