Rh3CG250000

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000620
Physical Location & Seq
Reverse (-)
24245570 .. 24246286
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG250000.1

Sequence Viewer

Length: 717 bp
ATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCTTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGCGTTTAGAGGATATTATAGCGGAGTAAATAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTACGTTTACTGATGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATGAAGTTAGTGTTCTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCATGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGACAAAAAAAACGACGGTCGTCCAAAATTTGCTAAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

238

Amino Acids

27.66

Weight (kDa)

6.12

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 18 - 226 7.2e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 140
AciI CCGC 3 cut(s) 138, 270, 384
AclWI GGATC 2 cut(s) 12, 161
AcsI RAATTY 2 cut(s) 55, 700
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 16, 458
AfiI CCNNNNNNNGG 3 cut(s) 534, 671, 672
AgsI TTSAA 5 cut(s) 72, 286, 401, 422, 470
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 3 cut(s) 253, 331, 349
AluI AGCT 3 cut(s) 253, 331, 349
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 2 cut(s) 12, 161
ApeKI GCWGC 2 cut(s) 22, 272
ApoI RAATTY 2 cut(s) 55, 700
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
AsuHPI GGTGA 2 cut(s) 137, 230
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 9, 259
BciT130I CCWGG 1 cut(s) 518
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 2 cut(s) 105, 461
BglII AGATCT 1 cut(s) 478
BisI GCNGC 2 cut(s) 23, 273
BlsI GCNGC 2 cut(s) 24, 274
Bme1390I CCNGG 1 cut(s) 518
BmrFI CCNGG 1 cut(s) 518
BoxI GACNNNNGTC 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 516, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 534, 671, 672
Bse1I ACTGG 2 cut(s) 220, 539
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 516, 517
BseLI CCNNNNNNNGG 3 cut(s) 534, 671, 672
BseNI ACTGG 2 cut(s) 220, 539
BseXI GCAGC 2 cut(s) 9, 259
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 693
BsiHKAI GWGCWC 1 cut(s) 333
BslFI GGGAC 2 cut(s) 251, 688
BslI CCNNNNNNNGG 3 cut(s) 534, 671, 672
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 2 cut(s) 251, 688
Bso31I GGTCTC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 4, 166, 478, 654
BspACI CCGC 3 cut(s) 138, 270, 384
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 2 cut(s) 12, 161
BspTNI GGTCTC 1 cut(s) 313
BsrI ACTGG 2 cut(s) 220, 539
BssECI CCNNGG 2 cut(s) 516, 517
BssMI GATC 4 cut(s) 4, 166, 478, 654
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 2 cut(s) 118, 691
Bst6I CTCTTC 2 cut(s) 92, 516
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 529, 707
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 4 cut(s) 7, 169, 481, 657
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 4 cut(s) 4, 166, 478, 654
BstMCI CGRYCG 1 cut(s) 693
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 518
BstPAI GACNNNNGTC 1 cut(s) 692
BstSCI CCNGG 1 cut(s) 516
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 9, 259
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 2 cut(s) 213, 320
Cac8I GCNNGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 15, 457
CviAII CATG 3 cut(s) 47, 610, 652
CviJI RGCY 4 cut(s) 84, 253, 331, 349
CviKI_1 RGCY 4 cut(s) 84, 253, 331, 349
CviQI GTAC 2 cut(s) 15, 457
DdeI CTNAG 2 cut(s) 529, 707
DpnI GATC 4 cut(s) 6, 168, 480, 656
DpnII GATC 4 cut(s) 4, 166, 478, 654
DraI TTTAAA 1 cut(s) 261
DraIII CACNNNGTG 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 92, 516
EarI CTCTTC 2 cut(s) 92, 516
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 3 cut(s) 50, 613, 655
FaqI GGGAC 2 cut(s) 251, 688
FatI CATG 3 cut(s) 46, 609, 651
FauI CCCGC 2 cut(s) 145, 277
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 23, 273
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 23, 273
FspBI CTAG 2 cut(s) 105, 461
GluI GCNGC 2 cut(s) 23, 273
Hin1II CATG 3 cut(s) 50, 613, 655
HinfI GANTC 4 cut(s) 142, 282, 596, 643
HphI GGTGA 2 cut(s) 137, 230
Hpy166II GTNNAC 3 cut(s) 193, 435, 491
Hpy188I TCNGA 2 cut(s) 9, 131
Hpy8I GTNNAC 3 cut(s) 193, 435, 491
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 2 cut(s) 118, 691
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 39, 80, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 529, 707
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 50, 613, 655
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 4 cut(s) 4, 166, 478, 654
LmnI GCTCC 2 cut(s) 336, 631
LpnPI CCDG 5 cut(s) 66, 201, 503, 520, 530
Lsp1109I GCAGC 2 cut(s) 9, 259
MaeI CTAG 2 cut(s) 105, 461
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 615
MalI GATC 4 cut(s) 6, 168, 480, 656
MboI GATC 4 cut(s) 4, 166, 478, 654
MboII GAAGA 6 cut(s) 109, 455, 458, 461, 503, 545
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 4 cut(s) 55, 109, 423, 700
MlyI GAGTC 2 cut(s) 136, 652
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 4 cut(s) 183, 365, 586, 617
MseI TTAA 2 cut(s) 204, 260
MspA1I CMGCKG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 518
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 4 cut(s) 4, 166, 478, 654
NlaIII CATG 3 cut(s) 50, 613, 655
PasI CCCWGGG 1 cut(s) 517
PfeI GAWTC 2 cut(s) 282, 596
PkrI GCNGC 2 cut(s) 24, 274
PleI GAGTC 2 cut(s) 136, 651
PpsI GAGTC 2 cut(s) 136, 651
PshAI GACNNNNGTC 1 cut(s) 692
PsiI TTATAA 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 2 cut(s) 16, 458
RsaNI GTAC 2 cut(s) 15, 457
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 204, 260
SatI GCNGC 2 cut(s) 23, 273
Sau3AI GATC 4 cut(s) 4, 166, 478, 654
SchI GAGTC 2 cut(s) 136, 652
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 1 cut(s) 333
SetI ASST 9 cut(s) 175, 255, 325, 333, 351, 399, 434, 462, 609
SmiI ATTTAAAT 1 cut(s) 261
Sse9I AATT 4 cut(s) 55, 109, 423, 700
SsiI CCGC 3 cut(s) 138, 270, 384
SspMI CTAG 2 cut(s) 105, 461
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 516
SwaI ATTTAAAT 1 cut(s) 261
TaaI ACNGT 2 cut(s) 118, 691
TaiI ACGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 55, 109, 423, 700
TatI WGTACW 1 cut(s) 14
TfiI GAWTC 2 cut(s) 282, 596
Tru1I TTAA 2 cut(s) 204, 260
Tru9I TTAA 2 cut(s) 204, 260
TscAI CASTG 2 cut(s) 220, 320
TseI GCWGC 2 cut(s) 22, 272
TspDTI ATGAA 5 cut(s) 66, 174, 456, 555, 602
TspRI CASTG 2 cut(s) 220, 320
XapI RAATTY 2 cut(s) 55, 700
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 105, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.