Rh5BG144500

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000620
Physical Location & Seq
Reverse (-)
14983200 .. 14983538
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG144500.1

Sequence Viewer

Length: 339 bp
ATGGTTCGGGCAAGACCTCTGCAACTTTCCTATCAAAAAGAATGGGAACCTAACAAATATAATACGATTCTTTATGATGAAAACTTCAAGCATATTTCAGGTGTGGCTGGCTTGCTTCTGGAGGAGAGTCTTACTTCTCGAGTTTTCCGAATCAGAAACTTTGCAACGCATCAAGTACTTTACTTGCCTGATGCACACGAGAAAACTAGATCAGTGGGTTTTGTTTTTGATTCATCCACTGGTGAGTGTAAAGCGGCATGTCTTCATTGGAAACAGGAGGGTGACTCTGGCTATGAAGTAGGCTTTAAAGTTCTAACTTCTAAGTATCGGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

112

Amino Acids

13.02

Weight (kDa)

9.14

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 254, 293
AvaI CYCGRG 1 cut(s) 138
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 254
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmcAI AGTACT 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 2 cut(s) 178, 181
BpiI GAAGAC 1 cut(s) 254
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 138
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 244
BssMI GATC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 109, 113
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 219, 237
Cac8I GCNNGC 2 cut(s) 109, 113
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 258
CviJI RGCY 4 cut(s) 107, 111, 291, 303
CviKI_1 RGCY 4 cut(s) 107, 111, 291, 303
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DraI TTTAAA 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 138
FaeI CATG 1 cut(s) 261
FaiI YATR 5 cut(s) 60, 75, 93, 259, 294
FatI CATG 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 140
Hin1II CATG 1 cut(s) 261
HinfI GANTC 5 cut(s) 67, 127, 150, 230, 284
HphI GGTGA 2 cut(s) 254, 293
Hpy188I TCNGA 3 cut(s) 149, 155, 330
Hpy188III TCNNGA 2 cut(s) 119, 138
HpyCH4V TGCA 3 cut(s) 22, 164, 194
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 1 cut(s) 261
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 84, 93, 104, 201, 225, 260, 273
LweI GCATC 2 cut(s) 178, 181
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 254
MlyI GAGTC 2 cut(s) 136, 278
MnlI CCTC 3 cut(s) 27, 115, 271
MseI TTAA 1 cut(s) 306
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PfeI GAWTC 3 cut(s) 67, 150, 230
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 2 cut(s) 135, 278
PpsI GAGTC 2 cut(s) 135, 278
PspN4I GGNNCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 209
ScaI AGTACT 1 cut(s) 177
SchI GAGTC 2 cut(s) 136, 278
SetI ASST 3 cut(s) 19, 52, 103
SfaNI GCATC 2 cut(s) 178, 181
Sfr274I CTCGAG 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 207
TaqI TCGA 1 cut(s) 139
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 3 cut(s) 67, 150, 230
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 219, 244
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 93, 222, 254, 309
TspRI CASTG 2 cut(s) 219, 244
XceI RCATGY 1 cut(s) 261
XhoI CTCGAG 1 cut(s) 138
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.