Prupe.4G220100_v2.0.a1

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000620
Physical Location & Seq
Forward (+)
13821097 .. 13823211
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G220100.1

Sequence Viewer

Length: 1149 bp
ATGACGACACTTGCACAAATCAACCAAATCAGAAATCAGAATGCGTTCAAGTTGGAGATGGCGCATTGCTACCAAAGAAATAAAAGGAGAACAGAACCTCTCCATTGCTACCTGTTGACCTACCAAAGAAATAAGAGGAGGAGAGTGAACCACGTAAAAGCATCAAAGCTTCCCTTTGATGTCATCACTGAGATTTTAAGCTGCTTGCCTGTGGACTCTTTGCTAAGGTTCAGGTGCGTCTGCAAGCAATGGTTTTCGTTGATTCAAGACCTCCAGTTCATTGCAAAACACATGGATCGAGCCCGTCCTCTGCAATACTCCTGTGCATTAATCAAACATGAAACTAAAATATTAGAAGCTGTGATTGATGAAAATTTCAAGTTCCTTAAGGTTTGTTCTGGCTTGTTTTTGGAGAAGAGTCTTAATTCTCAAGTTTGCCGGATCAGAAACCGTGCAACTCATCAAGTACTTTACTTGCCTAATGCACATGAAAGCGCAGAAATAATGGACTTTGTTTTTAATCCATCGACTCATGAGTGTAAAGTGGTATGTGTTGGAGAAGCTGGTTTTGAAGTCATAACTGTTGGAAAGGATGAGCAATGGAGACCTCTGAAGCGCCCTAACCAAGATGTGCCTCAACAGCATAGCAAGAAAGCAATAAACCTAAAATATCTGAAAGCAACTAACAAGGCAGAAGGGATTGGTCATTTGGTTATATTTATCGTCGACGGGAACAATTCGTGCCTGGAAATTCAATCTCTTGATATCTGGAACGAATGTTTCACTACTACTACGGTGCCCCGGGGATTTTTAGTACATTTGCCTAAAGTTTTGATTAGCTATTGGAAGCAATGTGTAGCTTTTGCAGAAATAGCAGAGGGAAAGCTTAACATATTGGTGTTAGAGGACGTGAAGGAGCACAAATGGAGTAGAAAGCAGATCACTGTTCCGTCGGAATTTTTAAAGGATCAGAATCTTCCTAATAGGAAAGCTAGTAAATTTATTTTGTGTGACATGGAGAGGCAGATAAGTAAGGTCATGTATTTAGAGAATGGGAAGAAATATTTAACTTCAAGGCAGTACAAGCCAAGCCTGATAGCTCTCAAGGGAATGCAATCAGAAAGGGCTGGAGTGGAAATGGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

383

Amino Acids

44.37

Weight (kDa)

9.31

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 796
AccI GTMKAC 1 cut(s) 726
AclWI GGATC 3 cut(s) 303, 449, 975
AcsI RAATTY 4 cut(s) 373, 750, 956, 998
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 3 cut(s) 468, 816, 1082
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 6 cut(s) 49, 266, 379, 572, 755, 1074
AjiI CACGTC 1 cut(s) 910
AjnI CCWGG 1 cut(s) 744
AluBI AGCT 9 cut(s) 169, 201, 359, 563, 840, 860, 886, 992, 1100
AluI AGCT 9 cut(s) 169, 201, 359, 563, 840, 860, 886, 992, 1100
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 3 cut(s) 303, 449, 975
Ama87I CYCGRG 1 cut(s) 801
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 4 cut(s) 373, 750, 956, 998
AseI ATTAAT 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 3 cut(s) 64, 497, 618
AsuC2I CCSGG 2 cut(s) 802, 803
AvaI CYCGRG 1 cut(s) 801
BaeGI GKGCMC 1 cut(s) 801
BanI GGYRCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 1 cut(s) 188
BccI CCATC 2 cut(s) 52, 532
BciT130I CCWGG 1 cut(s) 746
BcnI CCSGG 2 cut(s) 802, 803
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 1 cut(s) 993
BfoI RGCGCY 1 cut(s) 619
BfrI CTTAAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 3 cut(s) 746, 802, 803
BmeT110I CYCGRG 1 cut(s) 801
BmgBI CACGTC 1 cut(s) 910
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 3 cut(s) 746, 802, 803
BmsI GCATC 1 cut(s) 170
BpmI CTGGAG 2 cut(s) 257, 1149
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 414, 1088
BpuMI CCSGG 2 cut(s) 802, 803
BsaAI YACGTR 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 972
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 800, 801, 802
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 6 cut(s) 64, 103, 254, 279, 605, 857
Bse8I GATNNNNATC 1 cut(s) 972
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 800, 801, 802
BseGI GGATG 1 cut(s) 598
BseJI GATNNNNATC 1 cut(s) 972
BseMI GCAATG 6 cut(s) 64, 103, 254, 279, 605, 857
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 2 cut(s) 151, 154
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 921
BsiHKCI CYCGRG 1 cut(s) 801
BsiSI CCGG 2 cut(s) 439, 802
BsmAI GTCTC 1 cut(s) 598
BsmI GAATGC 2 cut(s) 46, 1116
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 801
Bsp1286I GDGCHC 3 cut(s) 304, 801, 921
Bsp143I GATC 4 cut(s) 295, 441, 939, 967
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 798
BspPI GGATC 3 cut(s) 303, 449, 975
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 598
BsrDI GCAATG 6 cut(s) 64, 103, 254, 279, 605, 857
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 3 cut(s) 800, 801, 802
BssMI GATC 4 cut(s) 295, 441, 939, 967
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 4 cut(s) 452, 583, 796, 946
Bst6I CTCTTC 1 cut(s) 410
BstAFI CTTAAG 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 206, 245
BstDEI CTNAG 2 cut(s) 189, 224
BstF5I GGATG 1 cut(s) 598
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 3 cut(s) 64, 497, 618
BstKTI GATC 4 cut(s) 298, 444, 942, 970
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 4 cut(s) 295, 441, 939, 967
BstMWI GCNNNNNNNGC 3 cut(s) 640, 872, 1084
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 744, 800, 801
BstSLI GKGCMC 1 cut(s) 801
BstV1I GCAGC 1 cut(s) 188
BtrI CACGTC 1 cut(s) 910
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 186, 942
Cac8I GCNNGC 2 cut(s) 206, 245
CciI TCATGA 1 cut(s) 532
CfoI GCGC 3 cut(s) 64, 497, 618
Cfr9I CCCGGG 1 cut(s) 801
CseI GACGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 467, 815, 1081
CviAII CATG 6 cut(s) 292, 338, 488, 533, 1015, 1039
CviQI GTAC 3 cut(s) 467, 815, 1081
DdeI CTNAG 2 cut(s) 189, 224
DpnI GATC 4 cut(s) 297, 443, 941, 969
DpnII GATC 4 cut(s) 295, 441, 939, 967
DraI TTTAAA 1 cut(s) 963
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 801
EcoRII CCWGG 1 cut(s) 744
EcoRV GATATC 1 cut(s) 766
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 6 cut(s) 295, 341, 491, 536, 1018, 1042
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 6 cut(s) 291, 337, 487, 532, 1014, 1038
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 993
GlaI GCGC 3 cut(s) 63, 496, 617
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 2 cut(s) 257, 1149
HaeII RGCGCY 1 cut(s) 619
HapII CCGG 2 cut(s) 439, 802
HgaI GACGC 1 cut(s) 226
HhaI GCGC 3 cut(s) 64, 497, 618
Hin1II CATG 6 cut(s) 295, 341, 491, 536, 1018, 1042
Hin6I GCGC 3 cut(s) 62, 495, 616
HinP1I GCGC 3 cut(s) 62, 495, 616
HincII GTYRAC 2 cut(s) 117, 727
HindII GTYRAC 2 cut(s) 117, 727
HindIII AAGCTT 2 cut(s) 167, 884
HinfI GANTC 5 cut(s) 215, 262, 418, 529, 973
HpaII CCGG 2 cut(s) 439, 802
Hpy166II GTNNAC 4 cut(s) 117, 148, 214, 727
Hpy188I TCNGA 8 cut(s) 32, 39, 446, 612, 675, 955, 972, 1120
Hpy188III TCNNGA 4 cut(s) 266, 533, 761, 769
Hpy8I GTNNAC 4 cut(s) 117, 148, 214, 727
Hpy99I CGWCG 3 cut(s) 728, 731, 955
HpyAV CCTTC 2 cut(s) 689, 907
HpyCH4III ACNGT 4 cut(s) 452, 583, 796, 946
HpyCH4IV ACGT 2 cut(s) 153, 909
HpyCH4V TGCA 9 cut(s) 14, 243, 284, 313, 326, 455, 485, 866, 1114
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 872, 1084
HpyF3I CTNAG 2 cut(s) 189, 224
HpySE526I ACGT 2 cut(s) 153, 909
Hsp92II CATG 6 cut(s) 295, 341, 491, 536, 1018, 1042
HspAI GCGC 3 cut(s) 62, 495, 616
Kzo9I GATC 4 cut(s) 295, 441, 939, 967
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 993
MaeII ACGT 2 cut(s) 153, 909
MaeIII GTNAC 1 cut(s) 1010
MalI GATC 4 cut(s) 297, 443, 941, 969
MboI GATC 4 cut(s) 295, 441, 939, 967
MboII GAAGA 3 cut(s) 427, 968, 1069
MhlI GDGCHC 3 cut(s) 304, 801, 921
MluCI AATT 6 cut(s) 373, 424, 736, 750, 956, 998
MlyI GAGTC 3 cut(s) 209, 427, 523
MmeI TCCRAC 4 cut(s) 33, 535, 565, 933
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 8 cut(s) 197, 329, 387, 423, 519, 888, 962, 1067
MslI CAYNNNNRTG 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 2 cut(s) 439, 802
MspR9I CCNGG 3 cut(s) 746, 802, 803
Mva1269I GAATGC 2 cut(s) 46, 1116
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 3 cut(s) 640, 872, 1084
NciI CCSGG 2 cut(s) 802, 803
NdeII GATC 4 cut(s) 295, 441, 939, 967
NlaIII CATG 6 cut(s) 295, 341, 491, 536, 1018, 1042
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 1 cut(s) 1010
PagI TCATGA 1 cut(s) 532
PctI GAATGC 2 cut(s) 46, 1116
PdmI GAANNNNTTC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 262, 973
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 3 cut(s) 209, 426, 523
PpsI GAGTC 3 cut(s) 209, 426, 523
Ppu21I YACGTR 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 798
RsaI GTAC 3 cut(s) 468, 816, 1082
RsaNI GTAC 3 cut(s) 467, 815, 1081
RseI CAYNNNNRTG 1 cut(s) 896
SalI GTCGAC 1 cut(s) 725
SaqAI TTAA 8 cut(s) 197, 329, 387, 423, 519, 888, 962, 1067
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 4 cut(s) 295, 441, 939, 967
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 3 cut(s) 209, 427, 523
ScrFI CCNGG 3 cut(s) 746, 802, 803
SduI GDGCHC 3 cut(s) 304, 801, 921
SfaNI GCATC 1 cut(s) 170
SgrDI CGTCGACG 1 cut(s) 725
SmaI CCCGGG 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 3 cut(s) 386, 429, 1103
SmoI CTYRAG 3 cut(s) 386, 429, 1103
Sse9I AATT 6 cut(s) 373, 424, 736, 750, 956, 998
SspI AATATT 2 cut(s) 351, 1064
SspMI CTAG 1 cut(s) 993
StyD4I CCNGG 3 cut(s) 744, 800, 801
TaaI ACNGT 4 cut(s) 452, 583, 796, 946
TaiI ACGT 2 cut(s) 156, 912
TaqI TCGA 3 cut(s) 298, 527, 726
TasI AATT 6 cut(s) 373, 424, 736, 750, 956, 998
TatI WGTACW 3 cut(s) 466, 814, 1080
TfiI GAWTC 2 cut(s) 262, 973
Tru1I TTAA 8 cut(s) 197, 329, 387, 423, 519, 888, 962, 1067
Tru9I TTAA 8 cut(s) 197, 329, 387, 423, 519, 888, 962, 1067
TscAI CASTG 2 cut(s) 193, 949
TseFI GTSAC 1 cut(s) 1010
TseI GCWGC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 1010
TspDTI ATGAA 4 cut(s) 268, 354, 384, 504
TspGWI ACGGA 1 cut(s) 939
TspMI CCCGGG 1 cut(s) 801
TspRI CASTG 2 cut(s) 193, 949
Vha464I CTTAAG 1 cut(s) 386
VspI ATTAAT 1 cut(s) 329
XapI RAATTY 4 cut(s) 373, 750, 956, 998
XmaI CCCGGG 1 cut(s) 801
XmiI GTMKAC 1 cut(s) 726
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 1 cut(s) 993
ZrmI AGTACT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.