RchiOBHm_Chr3g0479021

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000620
Physical Location & Seq
Reverse (-)
24686585 .. 24687670
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44415

Sequence Viewer

Length: 1086 bp
ATGTCTTGCAATGAAAGAAATAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGCTGCCAGTCGAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAAAAATATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTGAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCACTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCTTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGCGTTTAGAGGATATTATAGCAGAGTAAATAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTACGTTTACTGATGAAGATGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTGGACTGGAATGAAGTTAGTGTTCTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCATGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAAAACGACGGTCGTCCAAAATTTGCTAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTACATATCAATGATGAAGGGGACTACAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGGCCAAATGTGGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGGTAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

361

Amino Acids

42.03

Weight (kDa)

6.36

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 50 1.4e-10 F-box domain
F-box-like PF12937 12 - 46 1.1e-07 F-box-like
FBA_3 PF08268 67 - 281 1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 1055
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 311
AciI CCGC 2 cut(s) 309, 441
AclWI GGATC 2 cut(s) 171, 332
AcsI RAATTY 4 cut(s) 214, 872, 894, 908
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 2 cut(s) 175, 629
AfiI CCNNNNNNNGG 4 cut(s) 705, 842, 843, 1055
AgsI TTSAA 7 cut(s) 100, 134, 231, 457, 572, 593, 641
AjnI CCWGG 2 cut(s) 687, 1020
AluBI AGCT 3 cut(s) 424, 502, 520
AluI AGCT 3 cut(s) 424, 502, 520
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 484, 986
AlwI GGATC 2 cut(s) 171, 332
AoxI GGCC 2 cut(s) 845, 978
ApeKI GCWGC 3 cut(s) 73, 181, 443
ApoI RAATTY 4 cut(s) 214, 872, 894, 908
ArsI GACNNNNNNTTYG 2 cut(s) 799, 831
AspS9I GGNCC 1 cut(s) 845
AsuHPI GGTGA 2 cut(s) 308, 401
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 60, 168, 430
BccI CCATC 1 cut(s) 111
BciT130I CCWGG 2 cut(s) 689, 1022
BclI TGATCA 1 cut(s) 825
BcoDI GTCTC 2 cut(s) 484, 986
BfaI CTAG 3 cut(s) 264, 276, 632
BfmI CTRYAG 1 cut(s) 940
BglII AGATCT 1 cut(s) 649
BisI GCNGC 3 cut(s) 74, 182, 444
BlsI GCNGC 3 cut(s) 75, 183, 445
Bme1390I CCNGG 2 cut(s) 689, 1022
BmgT120I GGNCC 1 cut(s) 845
BmrFI CCNGG 2 cut(s) 689, 1022
BmrI ACTGGG 1 cut(s) 1005
BmsI GCATC 1 cut(s) 1035
BmuI ACTGGG 1 cut(s) 1005
BoxI GACNNNNGTC 1 cut(s) 864
Bpu10I CCTNAGC 2 cut(s) 92, 879
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 687, 688, 699
Bsc4I CCNNNNNNNGG 4 cut(s) 705, 842, 843, 1055
Bse1I ACTGG 4 cut(s) 77, 391, 710, 1000
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 2 cut(s) 689, 1022
BseDI CCNNGG 3 cut(s) 687, 688, 699
BseLI CCNNNNNNNGG 4 cut(s) 705, 842, 843, 1055
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 4 cut(s) 77, 391, 710, 1000
BseRI GAGGAG 1 cut(s) 980
BseXI GCAGC 3 cut(s) 60, 168, 430
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 865
BshFI GGCC 2 cut(s) 847, 980
BsiEI CGRYCG 1 cut(s) 865
BsiHKAI GWGCWC 1 cut(s) 504
BslFI GGGAC 2 cut(s) 422, 950
BslI CCNNNNNNNGG 4 cut(s) 705, 842, 843, 1055
BsmAI GTCTC 2 cut(s) 484, 986
BsmFI GGGAC 2 cut(s) 422, 950
BsnI GGCC 2 cut(s) 847, 980
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 163, 337, 649, 825
BspACI CCGC 2 cut(s) 309, 441
BspANI GGCC 2 cut(s) 847, 980
BspFNI CGCG 1 cut(s) 311
BspPI GGATC 2 cut(s) 171, 332
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 4 cut(s) 77, 391, 710, 1000
BssECI CCNNGG 3 cut(s) 687, 688, 699
BssMI GATC 4 cut(s) 163, 337, 649, 825
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 689, 1022
Bst4CI ACNGT 2 cut(s) 289, 863
Bst6I CTCTTC 2 cut(s) 251, 687
BstC8I GCNNGC 2 cut(s) 113, 241
BstDEI CTNAG 3 cut(s) 92, 879, 1068
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 4 cut(s) 166, 340, 652, 828
BstMAI GTCTC 2 cut(s) 484, 986
BstMBI GATC 4 cut(s) 163, 337, 649, 825
BstMCI CGRYCG 1 cut(s) 865
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 2 cut(s) 689, 1022
BstPAI GACNNNNGTC 1 cut(s) 864
BstSCI CCNGG 2 cut(s) 687, 1020
BstSFI CTRYAG 1 cut(s) 940
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 60, 168, 430
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 2 cut(s) 847, 980
BtgZI GCGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 384, 491
Cac8I GCNNGC 2 cut(s) 113, 241
Cfr13I GGNCC 1 cut(s) 845
Csp6I GTAC 2 cut(s) 174, 628
CviAII CATG 3 cut(s) 206, 781, 823
CviJI RGCY 9 cut(s) 73, 243, 424, 502, 520, 847, 980, 1015, 1020
CviKI_1 RGCY 9 cut(s) 73, 243, 424, 502, 520, 847, 980, 1015, 1020
CviQI GTAC 2 cut(s) 174, 628
DdeI CTNAG 3 cut(s) 92, 879, 1068
DpnI GATC 4 cut(s) 165, 339, 651, 827
DpnII GATC 4 cut(s) 163, 337, 649, 825
DraI TTTAAA 1 cut(s) 432
DraIII CACNNNGTG 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 251, 687
EarI CTCTTC 2 cut(s) 251, 687
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 687, 1020
EcoT14I CCWWGG 1 cut(s) 699
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 3 cut(s) 209, 784, 826
FaqI GGGAC 2 cut(s) 422, 950
FatI CATG 3 cut(s) 205, 780, 822
FauI CCCGC 2 cut(s) 316, 448
FbaI TGATCA 1 cut(s) 825
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 74, 182, 444
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 3 cut(s) 74, 182, 444
FspBI CTAG 3 cut(s) 264, 276, 632
GluI GCNGC 3 cut(s) 74, 182, 444
HaeIII GGCC 2 cut(s) 847, 980
Hin1II CATG 3 cut(s) 209, 784, 826
HinfI GANTC 7 cut(s) 47, 83, 130, 313, 453, 767, 814
HphI GGTGA 2 cut(s) 308, 401
Hpy166II GTNNAC 3 cut(s) 364, 606, 662
Hpy188I TCNGA 2 cut(s) 168, 302
Hpy188III TCNNGA 2 cut(s) 134, 958
Hpy8I GTNNAC 3 cut(s) 364, 606, 662
Hpy99I CGWCG 1 cut(s) 863
HpyAV CCTTC 4 cut(s) 566, 909, 926, 1070
HpyCH4III ACNGT 2 cut(s) 289, 863
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 5 cut(s) 9, 111, 198, 239, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 3 cut(s) 92, 879, 1068
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 3 cut(s) 209, 784, 826
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 4 cut(s) 163, 337, 649, 825
LmnI GCTCC 2 cut(s) 507, 802
Lsp1109I GCAGC 3 cut(s) 60, 168, 430
LweI GCATC 1 cut(s) 1035
MaeI CTAG 3 cut(s) 264, 276, 632
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 1 cut(s) 786
MalI GATC 4 cut(s) 165, 339, 651, 827
MboI GATC 4 cut(s) 163, 337, 649, 825
MboII GAAGA 5 cut(s) 268, 626, 632, 674, 716
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 7 cut(s) 142, 214, 280, 594, 872, 894, 908
MlyI GAGTC 3 cut(s) 92, 307, 823
MmeI TCCRAC 1 cut(s) 710
MnlI CCTC 6 cut(s) 354, 536, 757, 788, 958, 970
MseI TTAA 3 cut(s) 375, 431, 1032
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 689, 1022
MvaI CCWGG 2 cut(s) 689, 1022
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 4 cut(s) 163, 337, 649, 825
NlaIII CATG 3 cut(s) 209, 784, 826
PasI CCCWGGG 1 cut(s) 688
PfeI GAWTC 4 cut(s) 47, 130, 453, 767
PflMI CCANNNNNTGG 1 cut(s) 1055
PkrI GCNGC 3 cut(s) 75, 183, 445
PleI GAGTC 3 cut(s) 91, 307, 822
PpsI GAGTC 3 cut(s) 91, 307, 822
PshAI GACNNNNGTC 1 cut(s) 864
PsiI TTATAA 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 687, 1020
PspGI CCWGG 2 cut(s) 687, 1020
PspPI GGNCC 1 cut(s) 845
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 2 cut(s) 175, 629
RsaNI GTAC 2 cut(s) 174, 628
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 375, 431, 1032
SatI GCNGC 3 cut(s) 74, 182, 444
Sau3AI GATC 4 cut(s) 163, 337, 649, 825
Sau96I GGNCC 1 cut(s) 845
SchI GAGTC 3 cut(s) 92, 307, 823
ScrFI CCNGG 2 cut(s) 689, 1022
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 1035
SfcI CTRYAG 1 cut(s) 940
SmiI ATTTAAAT 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 924
Sse9I AATT 7 cut(s) 142, 214, 280, 594, 872, 894, 908
SsiI CCGC 2 cut(s) 309, 441
SspMI CTAG 3 cut(s) 264, 276, 632
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 687, 1020
StyI CCWWGG 1 cut(s) 699
SwaI ATTTAAAT 1 cut(s) 432
TaaI ACNGT 2 cut(s) 289, 863
TaiI ACGT 1 cut(s) 605
TaqI TCGA 2 cut(s) 81, 284
TasI AATT 7 cut(s) 142, 214, 280, 594, 872, 894, 908
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 4 cut(s) 47, 130, 453, 767
Tru1I TTAA 3 cut(s) 375, 431, 1032
Tru9I TTAA 3 cut(s) 375, 431, 1032
TscAI CASTG 2 cut(s) 391, 491
TseI GCWGC 3 cut(s) 73, 181, 443
TspRI CASTG 2 cut(s) 391, 491
Van91I CCANNNNNTGG 1 cut(s) 1055
XapI RAATTY 4 cut(s) 214, 872, 894, 908
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 3 cut(s) 264, 276, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.