RLG00000032506

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000620
Physical Location & Seq
Forward (+)
15925665 .. 15926341
677 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032506

Sequence Viewer

Length: 540 bp
ATGTCTGGAGTGGTACCAGAGCTTCCCTTTGATACCATCACTGAGATATTGAACTACAAGTTCATTGCAAAACATATGCTTCGAGCCCGACCTCTGCAATTTTCCTATCAACGTATGCGGAAGCATAACAAAAGGAGTACCTTTATCTATGATGAAAATGTCAAACTTGTTACAGAAGTGGCTGCTGGCTTGTTTCTGGAGGAGAGTCTTACTACTCGAGTTTGCCGAATCAGAAACTTTGCAACACACCAAGTCCTCTACTTGCCTTATGCAGGTGATGCTCATACCGCAATGGGTTTTGTTTTAGATTCATCCACTGGTGAGTGTAAAGTGGCATGTTTTTATAAGAATGAAGAGGGTGACTTTGGCCGTGAAATAGGCGTAAAAGTTCTGAGTATCGGAAAGGATGATCAATGGAGGACCCTGAAGCTGCCCAACCAAAATGACAAATTGTTCCAGAAAAGATATTTTAGAGCAACTCACAAAGAAGGGCCGCTCATTTGGTGGAAATCATTAGAGATGGAGAAGATTTCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

180

Amino Acids

20.83

Weight (kDa)

9.22

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AarI CACCTGC 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 3 cut(s) 118, 288, 494
AcoI YGGCCR 1 cut(s) 367
AcuI CTGAAG 1 cut(s) 446
AfaI GTAC 2 cut(s) 15, 139
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 52, 534
AluBI AGCT 3 cut(s) 22, 430, 537
AluI AGCT 3 cut(s) 22, 430, 537
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 2 cut(s) 367, 491
ApeKI GCWGC 2 cut(s) 182, 430
Asp718I GGTACC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 420, 491
AsuHPI GGTGA 3 cut(s) 287, 332, 371
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 420
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 88
BarI GAAGNNNNNNTAC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 169, 417
BccI CCATC 2 cut(s) 44, 514
BceAI ACGGC 1 cut(s) 354
BclI TGATCA 1 cut(s) 409
BfaI CTAG 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 3 cut(s) 183, 431, 494
BlsI GCNGC 3 cut(s) 184, 432, 495
Bme18I GGWCC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 420, 491
BmiI GGNNCC 2 cut(s) 15, 422
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 2 cut(s) 27, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 2 cut(s) 63, 297
BseGI GGATG 2 cut(s) 311, 412
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 2 cut(s) 63, 297
BseMII CTCAG 2 cut(s) 33, 383
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 169, 417
BshFI GGCC 2 cut(s) 369, 493
BshNI GGYRCC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 272
BsnI GGCC 2 cut(s) 369, 493
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 3 cut(s) 118, 288, 494
BspANI GGCC 2 cut(s) 369, 493
BspCNI CTCAG 2 cut(s) 34, 384
BspLI GGNNCC 2 cut(s) 15, 422
BspMI ACCTGC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 63, 297
BsrI ACTGG 1 cut(s) 322
BssMI GATC 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 42, 392
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 311, 412
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 278, 287
BstNSI RCATGY 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 169, 417
BsuRI GGCC 2 cut(s) 369, 493
BtsCI GGATG 2 cut(s) 311, 412
BtsIMutI CAGTG 2 cut(s) 39, 315
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 420, 491
Csp6I GTAC 2 cut(s) 14, 138
CviAII CATG 1 cut(s) 336
CviJI RGCY 8 cut(s) 22, 86, 182, 189, 369, 430, 493, 537
CviKI_1 RGCY 8 cut(s) 22, 86, 182, 189, 369, 430, 493, 537
CviQI GTAC 2 cut(s) 14, 138
DdeI CTNAG 2 cut(s) 42, 392
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 446
Eco88I CYCGRG 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 1 cut(s) 339
FaiI YATR 9 cut(s) 75, 77, 116, 126, 150, 270, 285, 337, 345
FatI CATG 1 cut(s) 335
FauNDI CATATG 1 cut(s) 75
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 183, 431, 494
FokI GGATG 2 cut(s) 298, 419
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 183, 431, 494
FspBI CTAG 1 cut(s) 538
GluI GCNGC 3 cut(s) 183, 431, 494
GsuI CTGGAG 2 cut(s) 27, 218
HaeIII GGCC 2 cut(s) 369, 493
Hin1II CATG 1 cut(s) 339
HinfI GANTC 3 cut(s) 205, 228, 308
HphI GGTGA 3 cut(s) 287, 332, 371
Hpy188I TCNGA 3 cut(s) 233, 393, 401
Hpy188III TCNNGA 3 cut(s) 6, 197, 457
HpyAV CCTTC 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 68, 97, 242, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 287
HpyF3I CTNAG 2 cut(s) 42, 392
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 339
KpnI GGTACC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 1 cut(s) 409
LpnPI CCDG 7 cut(s) 30, 171, 182, 258, 303, 437, 470
Lsp1109I GCAGC 2 cut(s) 169, 417
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 538
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 169, 359
MalI GATC 1 cut(s) 411
MbiI CCGCTC 1 cut(s) 496
MboI GATC 1 cut(s) 409
MboII GAAGA 2 cut(s) 365, 538
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 98, 449
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 5 cut(s) 102, 193, 266, 349, 411
MwoI GCNNNNNNNGC 2 cut(s) 278, 287
NdeI CATATG 1 cut(s) 75
NdeII GATC 1 cut(s) 409
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 15, 422
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PfeI GAWTC 2 cut(s) 228, 308
PkrI GCNGC 3 cut(s) 184, 432, 495
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 420
PsiI TTATAA 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 15, 422
PspPI GGNCC 2 cut(s) 420, 491
PspPPI RGGWCCY 1 cut(s) 420
PspXI VCTCGAGB 1 cut(s) 216
RsaI GTAC 2 cut(s) 15, 139
RsaNI GTAC 2 cut(s) 14, 138
SatI GCNGC 3 cut(s) 183, 431, 494
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 420, 491
SchI GAGTC 1 cut(s) 214
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 24, 94, 115, 143, 277, 432, 539
SfaNI GCATC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 98, 449
SsiI CCGC 3 cut(s) 118, 288, 494
SspMI CTAG 1 cut(s) 538
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 82, 217
TasI AATT 2 cut(s) 98, 449
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 2 cut(s) 228, 308
TscAI CASTG 2 cut(s) 46, 322
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 182, 430
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 4 cut(s) 52, 168, 300, 366
TspRI CASTG 2 cut(s) 46, 322
VpaK11BI GGWCC 1 cut(s) 420
XagI CCTNNNNNAGG 1 cut(s) 270
XceI RCATGY 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 216
XspI CTAG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.