Rorug05G0054800

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000620
Physical Location & Seq
Forward (+)
4824434 .. 4824787
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0054800.1

Sequence Viewer

Length: 354 bp
ATGAACAGAAAGAATAGAGTTGATAATTTCAAGAATGCCTCAGGATTAAAACCTGTGAAAACGGGTTTAAAAGCTGGGGAGGCTGGTTATGATCCATTTTCGAGGAGATGGACCAGGTCAAGAAATTACTATGTTTCAGAGCCTGGTGAACAAAAAGATGATGCCGAGGAAACTGCTGTTGCTGCTGAGGCATTGGCAGAGGTGGAAACTAATGGAGCAGAAGGGATAGTAGCAGTACGAGCTGGCTTGGTAGCCACAGCGGCAGCTCTGGAAGCTGCAGCTGGTTCTGGGAAGTTGATCGATACGATGGCTTCTGTTGATCAAGGAACATCGTCAAATCTCGCACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

117

Amino Acids

12.28

Weight (kDa)

5.18

Isoelectric Point (pI)

24.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 86
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 2 cut(s) 113, 142
AluBI AGCT 5 cut(s) 74, 242, 266, 275, 281
AluI AGCT 5 cut(s) 74, 242, 266, 275, 281
AlwI GGATC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 143
ApeKI GCWGC 4 cut(s) 182, 263, 275, 278
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 169, 262, 275, 290
BccI CCATC 2 cut(s) 102, 301
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 2 cut(s) 115, 144
BclI TGATCA 1 cut(s) 319
BfmI CTRYAG 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 5 cut(s) 183, 261, 264, 276, 279
BlsI GCNGC 5 cut(s) 184, 262, 265, 277, 280
Bme1390I CCNGG 2 cut(s) 115, 144
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 115, 144
BmsI GCATC 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 165
Bse21I CCTNAGG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 115, 144
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 54, 177
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 4 cut(s) 169, 262, 275, 290
BseYI CCCAGC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 300
BsmI GAATGC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 91, 297, 319
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 53, 178
BspDI ATCGAT 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 91, 297, 319
Bst2UI CCWGG 2 cut(s) 115, 144
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 40, 186
BstKTI GATC 3 cut(s) 94, 300, 322
BstMBI GATC 3 cut(s) 91, 297, 319
BstMWI GCNNNNNNNGC 6 cut(s) 80, 182, 188, 239, 260, 272
BstNI CCWGG 2 cut(s) 115, 144
BstSCI CCNGG 2 cut(s) 113, 142
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 4 cut(s) 169, 262, 275, 290
Bsu15I ATCGAT 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 40
BsuTUI ATCGAT 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 300
CsiI ACCWGGT 1 cut(s) 113
Csp6I GTAC 1 cut(s) 236
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 2 cut(s) 40, 186
DpnI GATC 3 cut(s) 93, 299, 321
DpnII GATC 3 cut(s) 91, 297, 319
DraI TTTAAA 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 113, 142
FaiI YATR 2 cut(s) 90, 132
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 5 cut(s) 183, 261, 264, 276, 279
Fsp4HI GCNGC 5 cut(s) 183, 261, 264, 276, 279
GluI GCNGC 5 cut(s) 183, 261, 264, 276, 279
GsaI CCCAGC 1 cut(s) 78
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 31, 42, 120, 269
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 215
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 182, 188, 239, 260, 272
HpyF3I CTNAG 2 cut(s) 40, 186
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 91, 297, 319
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 4 cut(s) 169, 262, 275, 290
LweI GCATC 1 cut(s) 151
MabI ACCWGGT 1 cut(s) 113
MalI GATC 3 cut(s) 93, 299, 321
MboI GATC 3 cut(s) 91, 297, 319
MluCI AATT 3 cut(s) 25, 124, 347
MnlI CCTC 6 cut(s) 49, 73, 96, 160, 181, 193
MseI TTAA 2 cut(s) 47, 68
MspA1I CMGCKG 2 cut(s) 260, 281
MspR9I CCNGG 2 cut(s) 115, 144
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 2 cut(s) 115, 144
MwoI GCNNNNNNNGC 6 cut(s) 80, 182, 188, 239, 260, 272
NdeII GATC 3 cut(s) 91, 297, 319
NmeAIII GCCGAG 1 cut(s) 190
PctI GAATGC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 115
PkrI GCNGC 5 cut(s) 184, 262, 265, 277, 280
Psp6I CCWGG 2 cut(s) 113, 142
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 113, 142
PspPI GGNCC 1 cut(s) 111
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 47, 68
SatI GCNGC 5 cut(s) 183, 261, 264, 276, 279
Sau3AI GATC 3 cut(s) 91, 297, 319
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 115, 144
SetI ASST 8 cut(s) 55, 76, 119, 204, 244, 268, 277, 283
SexAI ACCWGGT 1 cut(s) 113
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 111
Sse9I AATT 3 cut(s) 25, 124, 347
SsiI CCGC 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 113, 142
TaqI TCGA 2 cut(s) 101, 300
TasI AATT 3 cut(s) 25, 124, 347
TauI GCSGC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 47, 68
Tru9I TTAA 2 cut(s) 47, 68
TseI GCWGC 4 cut(s) 182, 263, 275, 278
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.