Prupe.4G130300_v2.0.a1

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000620
Physical Location & Seq
Forward (+)
7197377 .. 7198732
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G130300.1

Sequence Viewer

Length: 1140 bp
ATGCAGATGGACGTGAGCTGCTACCAAAGAAGACCAAAAGAACCAAAGCTTCTGTTTCCCATGATCATTGAGATTCTGAGCTGGCTACCGGTGGAGTCATTGCTCAGATTCAAATCTGTCAACAAAAACTGGTCTTCGTCGATGGAAGAATACAGCTTCATTTCAAAGCATATGAATCGGACAAGACCTGTACGACTAAAATATCGATTGACAAAGCAACCTGGCTACATAGCCCTTGGTTCCGAGGAAAATTACGAGTGCATGTTCATTGTTGCTGGCTTGGTTCTAGAGAAGCATTCTTCCAGCCAAGTTTGCCGCATCAGAAATCCAGCCACCCACCAAGTGCTTTACTTGCCTGATGCCCATCTTGGTGTCAACCTAATGGTATCCACTTTTAATTCATCGACTGGTGAGGTCAAATTGGTAGCTTCCTACAGTGAAAACAATGAGGCAGGGTTTGAAGTTTTGACAGTTGGCAAGGATGAGAATTGGAGACCTTTGAAATACCCTAATCAGGGTTTGTCAAATAAACAGGCCAAAAGAAGACAGTTTCTTCTAGCTGATAAGGCTGATGCTGGGGTTTGCTATTGTGCTGAAACCCTAACTGATGGACAAGACATGTACTTAGAAGTTCACTGTCTTGATCTCTGGAGTGAGACATTCATGACAGCCACTCTGCCCGAGGGAGTTTTTTCTGATTTGAGCAAAGCTCGGATTATCAGTTGGAACCAAAGTATAGCTGTGGTTGATATAATTGATGAAGCTCTTCATGCCTTGGTGTTAGAAGACTTCAAGGAGCAAAAATGGAGCCGATACAAGAACATTGTTCCAATGAAGTTTTTGAAGGAAACCCGATTTCCGGAAGGTGGATCTATTGTTCCTTCCAGTGTTGATTCTGATGACCTCAGGTTTGTTTATAATAATGGGGAGGAATACTTGGTGTGTAAGGAAAGTAAGTCAATATCCACAAGTCACGCCCAACCAGGTCTTGTGTACGATATGAAAATGCACAAAGTTAAGAGTTTCATACGTCGAAGGTTTGATGGGGAAGGTTGGGGAAATCATAGGCCAAGCCTGATGAGTTTCGAGGGAATGAGGCCAGAAGAGGAGGGTGCAAGTACAAGTACAACCCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

380

Amino Acids

43.38

Weight (kDa)

6.35

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
AccIII TCCGGA 1 cut(s) 859
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 877
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 5 cut(s) 192, 623, 995, 1120, 1126
AfiI CCNNNNNNNGG 4 cut(s) 514, 515, 859, 866
AflIII ACRYGT 1 cut(s) 618
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 6 cut(s) 112, 165, 461, 502, 793, 844
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 220, 982
AloI GAACNNNNNNTCC 2 cut(s) 861, 893
AluBI AGCT 9 cut(s) 18, 49, 81, 156, 428, 560, 710, 740, 764
AluI AGCT 9 cut(s) 18, 49, 81, 156, 428, 560, 710, 740, 764
Alw26I GTCTC 2 cut(s) 487, 650
AlwI GGATC 1 cut(s) 877
Ama87I CYCGRG 1 cut(s) 680
Aor13HI TCCGGA 1 cut(s) 859
AoxI GGCC 3 cut(s) 534, 1067, 1097
ApeKI GCWGC 1 cut(s) 18
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AsiGI ACCGGT 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 765
AsuHPI GGTGA 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 905
BbsI GAAGAC 4 cut(s) 37, 126, 550, 792
BbvI GCAGC 1 cut(s) 5
BccI CCATC 4 cut(s) 136, 372, 602, 1037
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 222, 984
BciVI GTATCC 1 cut(s) 397
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 487, 650
BfaI CTAG 2 cut(s) 287, 557
BfmI CTRYAG 1 cut(s) 433
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 2 cut(s) 19, 316
BlsI GCNGC 2 cut(s) 20, 317
Bme1390I CCNGG 2 cut(s) 222, 984
BmeT110I CYCGRG 1 cut(s) 680
BmgBI CACGTC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 241, 728, 809
BmrFI CCNGG 2 cut(s) 222, 984
BmsI GCATC 3 cut(s) 327, 349, 562
BpiI GAAGAC 4 cut(s) 37, 126, 550, 792
BplI GAGNNNNNCTC 2 cut(s) 694, 726
BpmI CTGGAG 1 cut(s) 670
Bsa29I ATCGAT 1 cut(s) 205
BsaBI GATNNNNATC 2 cut(s) 112, 363
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 4 cut(s) 235, 243, 681, 774
BsaWI WCCGGW 2 cut(s) 88, 859
Bsc4I CCNNNNNNNGG 4 cut(s) 514, 515, 859, 866
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 134, 412, 885
Bse21I CCTNAGG 1 cut(s) 905
Bse3DI GCAATG 1 cut(s) 98
Bse8I GATNNNNATC 2 cut(s) 112, 363
BseAI TCCGGA 1 cut(s) 859
BseBI CCWGG 2 cut(s) 222, 984
BseCI ATCGAT 1 cut(s) 205
BseDI CCNNGG 4 cut(s) 235, 243, 681, 774
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 2 cut(s) 112, 363
BseLI CCNNNNNNNGG 4 cut(s) 514, 515, 859, 866
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 68, 118, 919
BseNI ACTGG 3 cut(s) 134, 412, 885
BseRI GAGGAG 1 cut(s) 1121
BseXI GCAGC 1 cut(s) 5
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 3 cut(s) 536, 1069, 1099
BshTI ACCGGT 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 2 cut(s) 89, 860
BslI CCNNNNNNNGG 4 cut(s) 514, 515, 859, 866
BsmAI GTCTC 2 cut(s) 487, 650
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 3 cut(s) 536, 1069, 1099
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 680
Bsp13I TCCGGA 1 cut(s) 859
Bsp143I GATC 3 cut(s) 63, 643, 869
BspACI CCGC 1 cut(s) 316
BspANI GGCC 3 cut(s) 536, 1069, 1099
BspCNI CTCAG 3 cut(s) 69, 117, 918
BspDI ATCGAT 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 859
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 3 cut(s) 241, 728, 809
BspPI GGATC 1 cut(s) 877
BspQI GCTCTTC 1 cut(s) 771
BspTNI GGTCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 3 cut(s) 134, 412, 885
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 235, 243, 681, 774
BssMI GATC 3 cut(s) 63, 643, 869
BssT1I CCWWGG 2 cut(s) 235, 774
Bst2UI CCWGG 2 cut(s) 222, 984
Bst4CI ACNGT 4 cut(s) 437, 472, 549, 638
Bst6I CTCTTC 2 cut(s) 771, 1098
BstC8I GCNNGC 2 cut(s) 83, 277
BstDEI CTNAG 4 cut(s) 77, 104, 625, 905
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 3 cut(s) 66, 646, 872
BstMAI GTCTC 2 cut(s) 487, 650
BstMBI GATC 3 cut(s) 63, 643, 869
BstMWI GCNNNNNNNGC 4 cut(s) 312, 352, 566, 770
BstNI CCWGG 2 cut(s) 222, 984
BstNSI RCATGY 2 cut(s) 265, 622
BstSCI CCNGG 2 cut(s) 220, 982
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 5
BstV2I GAAGAC 4 cut(s) 37, 126, 550, 792
BstX2I RGATCY 1 cut(s) 869
BstYI RGATCY 1 cut(s) 869
Bsu15I ATCGAT 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 905
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 3 cut(s) 536, 1069, 1099
BsuTUI ATCGAT 1 cut(s) 205
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 442, 634, 892
Cac8I GCNNGC 2 cut(s) 83, 277
CciI TCATGA 1 cut(s) 663
Cfr10I RCCGGY 1 cut(s) 88
ClaI ATCGAT 1 cut(s) 205
CsiI ACCWGGT 1 cut(s) 982
Csp6I GTAC 5 cut(s) 191, 622, 994, 1119, 1125
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 5 cut(s) 61, 262, 619, 664, 770
CviQI GTAC 5 cut(s) 191, 622, 994, 1119, 1125
DdeI CTNAG 4 cut(s) 77, 104, 625, 905
DpnI GATC 3 cut(s) 65, 645, 871
DpnII GATC 3 cut(s) 63, 643, 869
DraIII CACNNNGTG 1 cut(s) 343
Eam1104I CTCTTC 2 cut(s) 771, 1098
EarI CTCTTC 2 cut(s) 771, 1098
Eco130I CCWWGG 2 cut(s) 235, 774
Eco31I GGTCTC 1 cut(s) 487
Eco81I CCTNAGG 1 cut(s) 905
Eco88I CYCGRG 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 220, 982
EcoT14I CCWWGG 2 cut(s) 235, 774
ErhI CCWWGG 2 cut(s) 235, 774
FaeI CATG 5 cut(s) 64, 265, 622, 667, 773
FatI CATG 5 cut(s) 60, 261, 618, 663, 769
FauNDI CATATG 1 cut(s) 171
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 19, 316
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 2 cut(s) 19, 316
FspBI CTAG 2 cut(s) 287, 557
GluI GCNGC 2 cut(s) 19, 316
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 670
HaeIII GGCC 3 cut(s) 536, 1069, 1099
HapII CCGG 2 cut(s) 89, 860
Hin1II CATG 5 cut(s) 64, 265, 622, 667, 773
HincII GTYRAC 2 cut(s) 121, 376
HindII GTYRAC 2 cut(s) 121, 376
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 5 cut(s) 73, 95, 108, 175, 893
HpaII CCGG 2 cut(s) 89, 860
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 4 cut(s) 121, 376, 634, 994
Hpy188I TCNGA 8 cut(s) 78, 107, 180, 244, 323, 697, 714, 898
Hpy188III TCNNGA 5 cut(s) 287, 641, 649, 664, 860
Hpy8I GTNNAC 4 cut(s) 121, 376, 634, 994
Hpy99I CGWCG 2 cut(s) 142, 1035
HpyAV CCTTC 5 cut(s) 838, 857, 891, 1029, 1043
HpyCH4III ACNGT 4 cut(s) 437, 472, 549, 638
HpyCH4IV ACGT 2 cut(s) 12, 1030
HpyCH4V TGCA 4 cut(s) 4, 261, 1009, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 312, 352, 566, 770
HpyF3I CTNAG 4 cut(s) 77, 104, 625, 905
HpySE526I ACGT 2 cut(s) 12, 1030
Hsp92II CATG 5 cut(s) 64, 265, 622, 667, 773
Kpn2I TCCGGA 1 cut(s) 859
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 643, 869
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 2 cut(s) 796, 807
Lsp1109I GCAGC 1 cut(s) 5
LweI GCATC 3 cut(s) 327, 349, 562
MabI ACCWGGT 1 cut(s) 982
MaeI CTAG 2 cut(s) 287, 557
MaeII ACGT 2 cut(s) 12, 1030
MaeIII GTNAC 1 cut(s) 971
MalI GATC 3 cut(s) 65, 645, 871
MboI GATC 3 cut(s) 63, 643, 869
MboII GAAGA 9 cut(s) 42, 126, 158, 291, 545, 555, 758, 797, 1115
MflI RGATCY 1 cut(s) 869
MluCI AATT 5 cut(s) 250, 397, 419, 487, 753
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 704
MroI TCCGGA 1 cut(s) 859
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 2 cut(s) 396, 1017
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 2 cut(s) 89, 860
MspR9I CCNGG 2 cut(s) 222, 984
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 2 cut(s) 222, 984
MwoI GCNNNNNNNGC 4 cut(s) 312, 352, 566, 770
NdeI CATATG 1 cut(s) 171
NdeII GATC 3 cut(s) 63, 643, 869
NlaIII CATG 5 cut(s) 64, 265, 622, 667, 773
NlaIV GGNNCC 3 cut(s) 241, 728, 809
NmuCI GTSAC 1 cut(s) 971
NspI RCATGY 2 cut(s) 265, 622
PagI TCATGA 1 cut(s) 663
PciI ACATGT 1 cut(s) 618
PciSI GCTCTTC 1 cut(s) 771
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 4 cut(s) 73, 108, 175, 893
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 20, 317
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PscI ACATGT 1 cut(s) 618
PsiI TTATAA 1 cut(s) 918
Psp6I CCWGG 2 cut(s) 220, 982
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 2 cut(s) 220, 982
PspN4I GGNNCC 3 cut(s) 241, 728, 809
PsuI RGATCY 1 cut(s) 869
RsaI GTAC 5 cut(s) 192, 623, 995, 1120, 1126
RsaNI GTAC 5 cut(s) 191, 622, 994, 1119, 1125
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 2 cut(s) 396, 1017
SatI GCNGC 2 cut(s) 19, 316
Sau3AI GATC 3 cut(s) 63, 643, 869
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 222, 984
SexAI ACCWGGT 1 cut(s) 982
SfaNI GCATC 3 cut(s) 327, 349, 562
SfcI CTRYAG 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 5 cut(s) 250, 397, 419, 487, 753
SsiI CCGC 1 cut(s) 316
SspMI CTAG 2 cut(s) 287, 557
StyD4I CCNGG 2 cut(s) 220, 982
StyI CCWWGG 2 cut(s) 235, 774
TaaI ACNGT 4 cut(s) 437, 472, 549, 638
TaiI ACGT 2 cut(s) 15, 1033
TaqI TCGA 5 cut(s) 140, 205, 404, 1033, 1086
TasI AATT 5 cut(s) 250, 397, 419, 487, 753
TatI WGTACW 3 cut(s) 621, 1118, 1124
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 4 cut(s) 73, 108, 175, 893
Tru1I TTAA 2 cut(s) 396, 1017
Tru9I TTAA 2 cut(s) 396, 1017
TscAI CASTG 3 cut(s) 442, 641, 892
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 971
TspRI CASTG 3 cut(s) 442, 641, 892
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 2 cut(s) 265, 622
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 2 cut(s) 287, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.