Prupe.4G130000_v2.0.a1

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000620
Physical Location & Seq
Forward (+)
7165418 .. 7167100
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G130000.1

Sequence Viewer

Length: 1116 bp
ATGAACATGGTGCCCCGCTACCAAAGTGGAGATCAAGGAAGAAGATTGGATCCCGCACGAAAAGCACTAAAGCTTCCTTTTGAGATGATCATTGAGATTCTGAGTTGGCTAACTGTAGACGCTTTGCTGAGAATGAAGTCTGTCTGCAAGAAATGGTGTGCTTTGATTGAAGACCATCACTTCATTGTGAAGCATATGGATCGGGCTAGTCCTCTGCCAATAAAATGTCAATACAGTAGGAGACATGACCAAGTAGCCCTTCTTCACAGTAAAAATATCCGGTGTATGTCCCGTGTTGCTGGCTTGTTTGTAGAGAAGCATCACAGTCTTCCTGTTTGCCGCATCAGAAATCCGGTCATTGGTCACGTCCTTGACTTGCCTAATGCACATATGGATGTGTGTAGAATGAAATGTGCTTTTGATTCATTGACTGGTGATGCCAAATTAGTAAGTGCTTATATCCACAATGATGAAGTGGGATATGAAGTTATGAGCATTGGACAAGATGGGGATTGGAGAGCCTTGAAACACCCAAACCAAGGCTTGTTGAAGAAAAATGGCAAATGGACAACAAGAAGGCAATTTTTTCTAACTGATGAGGTTCATGATGGGGTTTATTTTTGTTCTGAAATTATAACAGATGGGGAAGATTGGTGCTTGGAAGTCCAAGCTCTCGATCCGTGGAATGAGTGCTTCATCACAACTACATTGCCCCAAGGAGTTTTCAATGGCTGCAAGAGAGTTTGGGTTTTCAATTGGAACCAACATATAGCTGTTGGAGATATTGTAGAGGAAGAACTTCATGTCTTGGTGCTAGAAGACTTGAAAGAGGAACAATGGAGTCAAAATAAGATCATTGTGCCATTGAAATTTTTGCAGCATCAGCCACTTTTGGATGATCAAGTTCTCATTCCTGTGAAGGCTGATTGTGATGAGCTCAAGCTGCGTTATAAGGGAGGGAAGACTCTCTTTTATGACATGAACAATGAGATGATTAAGAAGGTGGTGTATAAATGGTTCGACACCGATCTTCTGGGATTTTATAAGCCAAGCCTTGTGAGTCTCAAGGGAATGAGACAAGACGAGAGGGTACGACACAGAATGGGGATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

372

Amino Acids

43.2

Weight (kDa)

7.6

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 635, 951, 1044
AccB1I GGYRCC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 117
AciI CCGC 3 cut(s) 16, 54, 340
AclWI GGATC 4 cut(s) 44, 57, 207, 671
AcsI RAATTY 1 cut(s) 869
AfaI GTAC 1 cut(s) 1092
AfiI CCNNNNNNNGG 2 cut(s) 359, 539
AgsI TTSAA 7 cut(s) 170, 526, 550, 727, 754, 826, 868
AjiI CACGTC 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 5 cut(s) 73, 671, 773, 937, 943
AluI AGCT 5 cut(s) 73, 671, 773, 937, 943
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 3 cut(s) 235, 1067, 1069
AlwI GGATC 4 cut(s) 44, 57, 207, 671
ApeKI GCWGC 3 cut(s) 732, 877, 943
ApoI RAATTY 1 cut(s) 869
Asp700I GAANNNNTTC 1 cut(s) 798
AsuHPI GGTGA 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 15
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 939
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BbsI GAAGAC 4 cut(s) 177, 320, 825, 968
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 3 cut(s) 719, 889, 930
BccI CCATC 4 cut(s) 183, 500, 602, 635
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BclI TGATCA 2 cut(s) 87, 898
BcoDI GTCTC 3 cut(s) 235, 1067, 1069
BfaI CTAG 2 cut(s) 207, 815
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 4 cut(s) 340, 733, 878, 944
BlsI GCNGC 4 cut(s) 341, 734, 879, 945
BmgBI CACGTC 1 cut(s) 367
BmiI GGNNCC 3 cut(s) 12, 51, 761
BmsI GCATC 4 cut(s) 328, 351, 427, 889
BpiI GAAGAC 4 cut(s) 177, 320, 825, 968
BpuEI CTTGAG 2 cut(s) 923, 1049
BsaJI CCNNGG 3 cut(s) 538, 680, 715
BsaWI WCCGGW 2 cut(s) 279, 352
BsaXI ACNNNNNCTCC 2 cut(s) 771, 801
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 539
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 707
BseDI CCNNGG 3 cut(s) 538, 680, 715
BseGI GGATG 2 cut(s) 400, 901
BseLI CCNNNNNNNGG 2 cut(s) 359, 539
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 2 cut(s) 92, 119
BseNI ACTGG 1 cut(s) 436
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 3 cut(s) 719, 889, 930
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 939
BsiSI CCGG 2 cut(s) 280, 353
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 359, 539
BsmAI GTCTC 3 cut(s) 235, 1067, 1069
BsmFI GGGAC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 15, 939
Bsp143I GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
BspACI CCGC 3 cut(s) 16, 54, 340
BspCNI CTCAG 2 cut(s) 93, 120
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 3 cut(s) 12, 51, 761
BspPI GGATC 4 cut(s) 44, 57, 207, 671
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 707
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 538, 680, 715
BssMI GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
BssT1I CCWWGG 2 cut(s) 538, 715
Bst4CI ACNGT 4 cut(s) 115, 236, 269, 326
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 101, 128
BstDSI CCRYGG 1 cut(s) 680
BstF5I GGATG 2 cut(s) 400, 901
BstKTI GATC 8 cut(s) 34, 52, 90, 202, 679, 855, 901, 1030
BstMAI GTCTC 3 cut(s) 235, 1067, 1069
BstMBI GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 62, 883, 943
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 719, 889, 930
BstV2I GAAGAC 4 cut(s) 177, 320, 825, 968
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 680
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 400, 901
Cac8I GCNNGC 1 cut(s) 301
CciI TCATGA 1 cut(s) 604
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 1091
CviAII CATG 5 cut(s) 7, 245, 605, 803, 979
CviQI GTAC 1 cut(s) 1091
DdeI CTNAG 2 cut(s) 101, 128
DpnI GATC 8 cut(s) 33, 51, 89, 201, 678, 854, 900, 1029
DpnII GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
Ecl136II GAGCTC 1 cut(s) 937
Eco130I CCWWGG 2 cut(s) 538, 715
Eco24I GRGCYC 1 cut(s) 939
Eco53kI GAGCTC 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 538, 715
EcoT38I GRGCYC 1 cut(s) 939
ErhI CCWWGG 2 cut(s) 538, 715
FaeI CATG 5 cut(s) 10, 248, 608, 806, 982
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 953, 985
FaqI GGGAC 1 cut(s) 274
FatI CATG 5 cut(s) 6, 244, 604, 802, 978
FauI CCCGC 2 cut(s) 23, 61
FauNDI CATATG 2 cut(s) 195, 390
FbaI TGATCA 2 cut(s) 87, 898
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 4 cut(s) 340, 733, 878, 944
FokI GGATG 2 cut(s) 407, 908
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 4 cut(s) 340, 733, 878, 944
FspBI CTAG 2 cut(s) 207, 815
GluI GCNGC 4 cut(s) 340, 733, 878, 944
HapII CCGG 2 cut(s) 280, 353
HgaI GACGC 1 cut(s) 128
Hin1II CATG 5 cut(s) 10, 248, 608, 806, 982
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 5 cut(s) 97, 422, 841, 964, 1060
HpaII CCGG 2 cut(s) 280, 353
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 102, 347, 628
Hpy188III TCNNGA 2 cut(s) 605, 674
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 4 cut(s) 269, 570, 913, 994
HpyCH4III ACNGT 4 cut(s) 115, 236, 269, 326
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 4 cut(s) 147, 386, 735, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 883, 943
HpyF3I CTNAG 2 cut(s) 101, 128
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 5 cut(s) 10, 248, 608, 806, 982
Ksp22I TGATCA 2 cut(s) 87, 898
Kzo9I GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
LpnPI CCDG 7 cut(s) 285, 293, 345, 366, 417, 927, 1019
Lsp1109I GCAGC 3 cut(s) 719, 889, 930
LweI GCATC 4 cut(s) 328, 351, 427, 889
MaeI CTAG 2 cut(s) 207, 815
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 362
MalI GATC 8 cut(s) 33, 51, 89, 201, 678, 854, 900, 1029
MboI GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
MfeI CAATTG 1 cut(s) 754
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 15, 939
MluCI AATT 5 cut(s) 443, 581, 630, 754, 869
MlyI GAGTC 3 cut(s) 850, 958, 1069
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 6 cut(s) 222, 592, 784, 823, 950, 1080
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 1 cut(s) 996
MslI CAYNNNNRTG 3 cut(s) 393, 468, 914
MspI CCGG 2 cut(s) 280, 353
MunI CAATTG 1 cut(s) 754
MwoI GCNNNNNNNGC 3 cut(s) 62, 883, 943
NdeI CATATG 2 cut(s) 195, 390
NdeII GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
NlaIII CATG 5 cut(s) 10, 248, 608, 806, 982
NlaIV GGNNCC 3 cut(s) 12, 51, 761
NmuCI GTSAC 1 cut(s) 362
PagI TCATGA 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 2 cut(s) 97, 422
PkrI GCNGC 4 cut(s) 341, 734, 879, 945
PleI GAGTC 3 cut(s) 849, 958, 1068
PpsI GAGTC 3 cut(s) 849, 958, 1068
PsiI TTATAA 3 cut(s) 635, 951, 1044
Psp124BI GAGCTC 1 cut(s) 939
PspN4I GGNNCC 3 cut(s) 12, 51, 761
PsrI GAACNNNNNNTAC 2 cut(s) 1001, 1033
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 1092
RsaNI GTAC 1 cut(s) 1091
RseI CAYNNNNRTG 3 cut(s) 393, 468, 914
SacI GAGCTC 1 cut(s) 939
SaqAI TTAA 1 cut(s) 996
SatI GCNGC 4 cut(s) 340, 733, 878, 944
Sau3AI GATC 8 cut(s) 31, 49, 87, 199, 676, 852, 898, 1027
SchI GAGTC 3 cut(s) 850, 958, 1069
SduI GDGCHC 2 cut(s) 15, 939
SetI ASST 8 cut(s) 75, 369, 603, 673, 775, 939, 945, 1005
SfaNI GCATC 4 cut(s) 328, 351, 427, 889
SfcI CTRYAG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 393, 468, 914
SmlI CTYRAG 2 cut(s) 938, 1064
SmoI CTYRAG 2 cut(s) 938, 1064
Sse9I AATT 5 cut(s) 443, 581, 630, 754, 869
SsiI CCGC 3 cut(s) 16, 54, 340
SspMI CTAG 2 cut(s) 207, 815
SstI GAGCTC 1 cut(s) 939
StyI CCWWGG 2 cut(s) 538, 715
TaaI ACNGT 4 cut(s) 115, 236, 269, 326
TaiI ACGT 1 cut(s) 369
TaqI TCGA 2 cut(s) 675, 1020
TasI AATT 5 cut(s) 443, 581, 630, 754, 869
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 2 cut(s) 97, 422
Tru1I TTAA 1 cut(s) 996
Tru9I TTAA 1 cut(s) 996
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 3 cut(s) 732, 877, 943
Tsp45I GTSAC 1 cut(s) 362
TspGWI ACGGA 1 cut(s) 669
XapI RAATTY 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 2 cut(s) 207, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.