Rh4AG008500

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000620
Physical Location & Seq
Reverse (-)
1467437 .. 1468222
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG008500.1

Sequence Viewer

Length: 447 bp
ATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATGAAGTTAGTGTTGTTCTTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAGAACGACGGTCGTCCAAAATTTGCGAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGGTAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

148

Amino Acids

17.18

Weight (kDa)

5.44

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AcsI RAATTY 3 cut(s) 248, 270, 284
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 4 cut(s) 81, 218, 219, 416
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 2 cut(s) 63, 381
Alw26I GTCTC 1 cut(s) 347
AoxI GGCC 1 cut(s) 221
ApoI RAATTY 3 cut(s) 248, 270, 284
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
AspS9I GGNCC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 65, 383
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 316
BglII AGATCT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 65, 383
BmgT120I GGNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 65, 383
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 366
BoxI GACNNNNGTC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 63, 64
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 218, 219, 416
Bse1I ACTGG 2 cut(s) 86, 361
BseBI CCWGG 2 cut(s) 65, 383
BseDI CCNNGG 2 cut(s) 63, 64
BseLI CCNNNNNNNGG 4 cut(s) 81, 218, 219, 416
BseNI ACTGG 2 cut(s) 86, 361
BseRI GAGGAG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 4 cut(s) 81, 218, 219, 416
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 25, 201
BspANI GGCC 1 cut(s) 223
BsrI ACTGG 2 cut(s) 86, 361
BssECI CCNNGG 2 cut(s) 63, 64
BssMI GATC 2 cut(s) 25, 201
Bst2UI CCWGG 2 cut(s) 65, 383
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 76, 429
BstKTI GATC 2 cut(s) 28, 204
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 25, 201
BstMCI CGRYCG 1 cut(s) 241
BstNI CCWGG 2 cut(s) 65, 383
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 63, 381
BstSFI CTRYAG 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 199
CviJI RGCY 3 cut(s) 223, 376, 381
CviKI_1 RGCY 3 cut(s) 223, 376, 381
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 76, 429
DpnI GATC 2 cut(s) 27, 203
DpnII GATC 2 cut(s) 25, 201
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 63, 381
FaeI CATG 1 cut(s) 202
FaiI YATR 8 cut(s) 31, 132, 134, 174, 200, 297, 318, 372
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 198
FbaI TGATCA 1 cut(s) 201
FspBI CTAG 1 cut(s) 8
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 1 cut(s) 202
HinfI GANTC 2 cut(s) 143, 190
Hpy166II GTNNAC 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 250, 285, 302, 431
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 76, 429
Hsp92II CATG 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 25, 201
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 50, 67, 77, 319, 342, 368, 395, 423
LweI GCATC 1 cut(s) 396
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 162
MalI GATC 2 cut(s) 27, 203
MboI GATC 2 cut(s) 25, 201
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 25
MluCI AATT 3 cut(s) 248, 270, 284
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 3 cut(s) 133, 164, 334
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 65, 383
MvaI CCWGG 2 cut(s) 65, 383
NdeII GATC 2 cut(s) 25, 201
NlaIII CATG 1 cut(s) 202
PasI CCCWGGG 1 cut(s) 64
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 416
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 63, 381
PspGI CCWGG 2 cut(s) 63, 381
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 393
Sau3AI GATC 2 cut(s) 25, 201
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 65, 383
SetI ASST 3 cut(s) 9, 156, 442
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 3 cut(s) 248, 270, 284
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 63, 381
TaaI ACNGT 1 cut(s) 239
TasI AATT 3 cut(s) 248, 270, 284
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TspDTI ATGAA 4 cut(s) 102, 149, 315, 321
Van91I CCANNNNNTGG 1 cut(s) 416
XapI RAATTY 3 cut(s) 248, 270, 284
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.