Prupe.4G219800_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000620
Physical Location & Seq
Forward (+)
13812515 .. 13813988
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G219800.1

Sequence Viewer

Length: 1098 bp
ATGAAGATGGTGCGTTGCTACCAGAGAAACAAAATCATCATGATGAGGAGAGCTGATCCTGTAAAAGCATCAAAGAAGCTTCCCTTTGATATTATCACAGAGATTTTGACCTGGCTGCCTATAGATTCTCTAGTAAGATTCAAGCGTGTCTGCAAAAACTGGTACTTTTTGATTGTTCATGACCGCAAGTTCATAGCCAAACATATGGAGCGGACCTGTCTTCTGCGACTCAGATATGTATGCAAACATGAAGCTAACAAGTTAACCGTTATTTTCGACAAAAGCTTCGGAATGGCAGCGTTTTGTGCTGGCTTGGTTCTAGAGAAGAGTCTTACTAATTCTCAAGTTTTCCGAATTAGAAATCCTGCAACCCATCAGGTACTTTACTTGCCTAATGCACATGAGGGTACCAGGAATATGGACTTTGCTTTGAACCCATCCACTCATGAGTGTAAACTGGTATGTTTTTATGGCAAAGACAGTGAAGTTGGTTTTGAGGTGTTAACTATTGGGAAGGATGAGCAATGGAGGCCAATGAAACACCCAAACACAGATTTGCTGAAACATCGTGGCAAACCAGCGCTACAAATTTATAGAGGATCATCTTTTAAGTGTGAGGGGCGTGGTCACTTTGTCCAGGTTACTGGAGATGTGAAAGATTGGAACCTGAAAATTCACTCTCTTGATATTTTGAGTGAATGTTTCATTACTAATACCGTGCCCCGGGGATTTTATGTAAATTGGTGGGACAGTTTGGTTTTCTATTGGAATGACTGTGTAGCTGTTGCTGATATAGGAGAGGAAAAACTTACCGTGCTGGTGTTGGAGGACTACAAGCAGCACAAATGGAGTAAAAAGACGGTCCGGGTGACATTTTCAGAGGATCACATGACACTGCTGAAGGATCCATTTTTTGTTATCAATGCTCATTCTGATGGCCTTAATTTTCATTTTAAGGACAGATTTATTCACTATGATCTGAAGAGGGAGACAATTGAGAAGGTAAATATTCGCCTGGGAATCAACTTCTGTTTGGTGAAGCCAAGCCTGATAGCTCTTAAGGGAATGAAAACAGGAAAGGTTGCCTGCAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

366

Amino Acids

42.61

Weight (kDa)

9.41

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 407
AccBSI CCGCTC 1 cut(s) 211
AciI CCGC 2 cut(s) 184, 211
AclWI GGATC 5 cut(s) 50, 607, 891, 899, 912
AcsI RAATTY 2 cut(s) 588, 672
AcuI CTGAAG 2 cut(s) 920, 1001
AfaI GTAC 3 cut(s) 164, 381, 409
AfeI AGCGCT 1 cut(s) 582
AfiI CCNNNNNNNGG 1 cut(s) 723
AflII CTTAAG 1 cut(s) 1058
AgsI TTSAA 2 cut(s) 142, 433
AjnI CCWGG 4 cut(s) 110, 410, 636, 1014
AluBI AGCT 6 cut(s) 53, 79, 254, 285, 782, 1055
AluI AGCT 6 cut(s) 53, 79, 254, 285, 782, 1055
Alw26I GTCTC 1 cut(s) 983
AlwI GGATC 5 cut(s) 50, 607, 891, 899, 912
Ama87I CYCGRG 1 cut(s) 723
Aor51HI AGCGCT 1 cut(s) 582
AoxI GGCC 2 cut(s) 530, 937
ApeKI GCWGC 4 cut(s) 115, 296, 838, 1089
ApoI RAATTY 2 cut(s) 588, 672
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp718I GGTACC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 213, 862
AsuC2I CCSGG 3 cut(s) 724, 725, 866
AsuHPI GGTGA 2 cut(s) 880, 1048
AvaI CYCGRG 1 cut(s) 723
AvaII GGWCC 2 cut(s) 213, 862
BaeGI GKGCMC 1 cut(s) 723
BamHI GGATCC 1 cut(s) 904
BanI GGYRCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 102, 308, 850
BccI CCATC 3 cut(s) 381, 445, 929
BciT130I CCWGG 4 cut(s) 112, 412, 638, 1016
BcnI CCSGG 3 cut(s) 724, 725, 866
BcoDI GTCTC 1 cut(s) 983
BfaI CTAG 2 cut(s) 131, 320
BfmI CTRYAG 2 cut(s) 120, 1087
BfoI RGCGCY 1 cut(s) 584
BfrI CTTAAG 1 cut(s) 1058
BisI GCNGC 4 cut(s) 116, 297, 839, 1090
BlsI GCNGC 4 cut(s) 117, 298, 840, 1091
Bme1390I CCNGG 7 cut(s) 112, 412, 638, 724, 725, 866, 1016
Bme18I GGWCC 2 cut(s) 213, 862
BmeT110I CYCGRG 1 cut(s) 723
BmgT120I GGNCC 2 cut(s) 213, 862
BmiI GGNNCC 3 cut(s) 409, 665, 906
BmrFI CCNGG 7 cut(s) 112, 412, 638, 724, 725, 866, 1016
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 327
BpuMI CCSGG 3 cut(s) 724, 725, 866
BsaJI CCNNGG 4 cut(s) 722, 723, 724, 1015
Bsc4I CCNNNNNNNGG 1 cut(s) 723
Bse1I ACTGG 3 cut(s) 164, 462, 649
Bse3DI GCAATG 1 cut(s) 530
BseBI CCWGG 4 cut(s) 112, 412, 638, 1016
BseDI CCNNGG 4 cut(s) 722, 723, 724, 1015
BseGI GGATG 2 cut(s) 437, 523
BseLI CCNNNNNNNGG 1 cut(s) 723
BseMI GCAATG 1 cut(s) 530
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 3 cut(s) 164, 462, 649
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 3 cut(s) 102, 308, 850
BshFI GGCC 2 cut(s) 532, 939
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 723
BsiSI CCGG 2 cut(s) 724, 865
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 1 cut(s) 723
BsmAI GTCTC 1 cut(s) 983
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 2 cut(s) 532, 939
BsoBI CYCGRG 1 cut(s) 723
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 5 cut(s) 55, 599, 883, 904, 976
BspACI CCGC 2 cut(s) 184, 211
BspANI GGCC 2 cut(s) 532, 939
BspCNI CTCAG 1 cut(s) 243
BspHI TCATGA 3 cut(s) 39, 178, 445
BspLI GGNNCC 3 cut(s) 409, 665, 906
BspMAI CTGCAG 1 cut(s) 1091
BspPI GGATC 5 cut(s) 50, 607, 891, 899, 912
BspT107I GGYRCC 1 cut(s) 407
BspTI CTTAAG 1 cut(s) 1058
BsrBI CCGCTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 530
BsrI ACTGG 3 cut(s) 164, 462, 649
BssECI CCNNGG 4 cut(s) 722, 723, 724, 1015
BssMI GATC 5 cut(s) 55, 599, 883, 904, 976
Bst2UI CCWGG 4 cut(s) 112, 412, 638, 1016
Bst4CI ACNGT 7 cut(s) 268, 482, 718, 752, 776, 814, 862
Bst6I CTCTTC 2 cut(s) 320, 977
BstAFI CTTAAG 1 cut(s) 1058
BstC8I GCNNGC 2 cut(s) 310, 1087
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 437, 523
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 5 cut(s) 58, 602, 886, 907, 979
BstMAI GTCTC 1 cut(s) 983
BstMBI GATC 5 cut(s) 55, 599, 883, 904, 976
BstMWI GCNNNNNNNGC 2 cut(s) 305, 529
BstNI CCWGG 4 cut(s) 112, 412, 638, 1016
BstSCI CCNGG 7 cut(s) 110, 410, 636, 722, 723, 864, 1014
BstSFI CTRYAG 2 cut(s) 120, 1087
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 3 cut(s) 102, 308, 850
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 904
BstXI CCANNNNNNTGG 3 cut(s) 205, 418, 644
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 2 cut(s) 532, 939
BtsCI GGATG 2 cut(s) 437, 523
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 2 cut(s) 487, 893
Cac8I GCNNGC 2 cut(s) 310, 1087
CciI TCATGA 3 cut(s) 39, 178, 445
CfoI GCGC 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 213, 862
Cfr9I CCCGGG 1 cut(s) 723
CpoI CGGWCCG 1 cut(s) 862
Csp6I GTAC 3 cut(s) 163, 380, 408
CspI CGGWCCG 1 cut(s) 862
CviAII CATG 6 cut(s) 40, 179, 248, 401, 446, 889
CviQI GTAC 3 cut(s) 163, 380, 408
DdeI CTNAG 1 cut(s) 230
DpnI GATC 5 cut(s) 57, 601, 885, 906, 978
DpnII GATC 5 cut(s) 55, 599, 883, 904, 976
Eam1104I CTCTTC 2 cut(s) 320, 977
EarI CTCTTC 2 cut(s) 320, 977
Eco47I GGWCC 2 cut(s) 213, 862
Eco47III AGCGCT 1 cut(s) 582
Eco57I CTGAAG 2 cut(s) 920, 1001
Eco88I CYCGRG 1 cut(s) 723
EcoRII CCWGG 4 cut(s) 110, 410, 636, 1014
FaeI CATG 6 cut(s) 43, 182, 251, 404, 449, 892
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 761
FatI CATG 6 cut(s) 39, 178, 247, 400, 445, 888
FauNDI CATATG 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 116, 297, 839, 1090
FokI GGATG 2 cut(s) 424, 530
Fsp4HI GCNGC 4 cut(s) 116, 297, 839, 1090
FspBI CTAG 2 cut(s) 131, 320
GlaI GCGC 1 cut(s) 582
GluI GCNGC 4 cut(s) 116, 297, 839, 1090
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 2 cut(s) 532, 939
HapII CCGG 2 cut(s) 724, 865
HhaI GCGC 1 cut(s) 583
Hin1II CATG 6 cut(s) 43, 182, 251, 404, 449, 892
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 2 cut(s) 264, 504
HindII GTYRAC 2 cut(s) 264, 504
HindIII AAGCTT 2 cut(s) 77, 283
HinfI GANTC 5 cut(s) 125, 138, 228, 328, 1020
HpaI GTTAAC 2 cut(s) 264, 504
HpaII CCGG 2 cut(s) 724, 865
HphI GGTGA 2 cut(s) 880, 1048
Hpy166II GTNNAC 3 cut(s) 264, 455, 504
Hpy188I TCNGA 6 cut(s) 233, 290, 353, 880, 934, 981
Hpy188III TCNNGA 5 cut(s) 40, 179, 320, 446, 683
Hpy8I GTNNAC 3 cut(s) 264, 455, 504
HpyAV CCTTC 3 cut(s) 508, 895, 994
HpyCH4III ACNGT 7 cut(s) 268, 482, 718, 752, 776, 814, 862
HpyCH4V TGCA 5 cut(s) 153, 243, 368, 398, 1089
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 529
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 6 cut(s) 43, 182, 251, 404, 449, 892
HspAI GCGC 1 cut(s) 581
KpnI GGTACC 1 cut(s) 411
KspAI GTTAAC 2 cut(s) 264, 504
Kzo9I GATC 5 cut(s) 55, 599, 883, 904, 976
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 3 cut(s) 102, 308, 850
LweI GCATC 1 cut(s) 77
MaeI CTAG 2 cut(s) 131, 320
MaeIII GTNAC 3 cut(s) 626, 640, 868
MalI GATC 5 cut(s) 57, 601, 885, 906, 978
MbiI CCGCTC 1 cut(s) 211
MboI GATC 5 cut(s) 55, 599, 883, 904, 976
MboII GAAGA 4 cut(s) 16, 212, 337, 994
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 7 cut(s) 337, 354, 588, 672, 739, 943, 993
MlyI GAGTC 2 cut(s) 222, 337
MmeI TCCRAC 1 cut(s) 804
MseI TTAA 6 cut(s) 263, 503, 609, 942, 954, 1059
MslI CAYNNNNRTG 2 cut(s) 41, 933
MspCI CTTAAG 1 cut(s) 1058
MspI CCGG 2 cut(s) 724, 865
MspR9I CCNGG 7 cut(s) 112, 412, 638, 724, 725, 866, 1016
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 4 cut(s) 112, 412, 638, 1016
MwoI GCNNNNNNNGC 2 cut(s) 305, 529
NciI CCSGG 3 cut(s) 724, 725, 866
NdeI CATATG 1 cut(s) 204
NdeII GATC 5 cut(s) 55, 599, 883, 904, 976
NlaIII CATG 6 cut(s) 43, 182, 251, 404, 449, 892
NlaIV GGNNCC 3 cut(s) 409, 665, 906
NmuCI GTSAC 2 cut(s) 626, 868
PagI TCATGA 3 cut(s) 39, 178, 445
PfeI GAWTC 3 cut(s) 125, 138, 1020
PkrI GCNGC 4 cut(s) 117, 298, 840, 1091
PleI GAGTC 2 cut(s) 222, 336
PpsI GAGTC 2 cut(s) 222, 336
Psp6I CCWGG 4 cut(s) 110, 410, 636, 1014
PspGI CCWGG 4 cut(s) 110, 410, 636, 1014
PspN4I GGNNCC 3 cut(s) 409, 665, 906
PspPI GGNCC 2 cut(s) 213, 862
PstI CTGCAG 1 cut(s) 1091
PsuI RGATCY 1 cut(s) 904
RsaI GTAC 3 cut(s) 164, 381, 409
RsaNI GTAC 3 cut(s) 163, 380, 408
RseI CAYNNNNRTG 2 cut(s) 41, 933
Rsr2I CGGWCCG 1 cut(s) 862
RsrII CGGWCCG 1 cut(s) 862
SaqAI TTAA 6 cut(s) 263, 503, 609, 942, 954, 1059
SatI GCNGC 4 cut(s) 116, 297, 839, 1090
Sau3AI GATC 5 cut(s) 55, 599, 883, 904, 976
Sau96I GGNCC 2 cut(s) 213, 862
SchI GAGTC 2 cut(s) 222, 337
ScrFI CCNGG 7 cut(s) 112, 412, 638, 724, 725, 866, 1016
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 2 cut(s) 120, 1087
SinI GGWCC 2 cut(s) 213, 862
SmaI CCCGGG 1 cut(s) 725
SmiMI CAYNNNNRTG 2 cut(s) 41, 933
SmlI CTYRAG 2 cut(s) 342, 1058
SmoI CTYRAG 2 cut(s) 342, 1058
Sse9I AATT 7 cut(s) 337, 354, 588, 672, 739, 943, 993
SsiI CCGC 2 cut(s) 184, 211
SspI AATATT 1 cut(s) 1009
SspMI CTAG 2 cut(s) 131, 320
StyD4I CCNGG 7 cut(s) 110, 410, 636, 722, 723, 864, 1014
TaaI ACNGT 7 cut(s) 268, 482, 718, 752, 776, 814, 862
TaqI TCGA 1 cut(s) 276
TasI AATT 7 cut(s) 337, 354, 588, 672, 739, 943, 993
TfiI GAWTC 3 cut(s) 125, 138, 1020
Tru1I TTAA 6 cut(s) 263, 503, 609, 942, 954, 1059
Tru9I TTAA 6 cut(s) 263, 503, 609, 942, 954, 1059
TscAI CASTG 2 cut(s) 487, 900
TseFI GTSAC 2 cut(s) 626, 868
TseI GCWGC 4 cut(s) 115, 296, 838, 1089
Tsp45I GTSAC 2 cut(s) 626, 868
TspDTI ATGAA 8 cut(s) 17, 167, 181, 264, 551, 694, 938, 1082
TspMI CCCGGG 1 cut(s) 723
TspRI CASTG 2 cut(s) 487, 900
Vha464I CTTAAG 1 cut(s) 1058
VpaK11BI GGWCC 2 cut(s) 213, 862
XapI RAATTY 2 cut(s) 588, 672
XbaI TCTAGA 1 cut(s) 319
XmaI CCCGGG 1 cut(s) 723
XspI CTAG 2 cut(s) 131, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.