RchiOBHm_Chr5g0019881

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000620
Physical Location & Seq
Reverse (-)
14285386 .. 14286279
894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30001

Sequence Viewer

Length: 894 bp
ATGGTTCGAGCCAGTCCTCTGCAACTTTCCCATAAAAAAGAATGGCAACCTAACAAATTGATCTGGACCATTCTTTCTGGGGCAAACTTCAAGCTTATCTCAGGTGTGGCTGGCTTGCTTCTGGAGGAGAGTCTTACTTCTCGAGTTTCCCGAATCAGAAACTTTGCAACGCATCAAGTACTTTACTTGCCTGATGCACATGGGGAAACTAGTACAGTGGGTTTTGTTTTTGATTCATCCACTTGTGAGTGTAAAGCGGCATGTTTTCATTGGAAACAGGAGGGTGACACTGGCAATGAAGTAGGCTTTAAAGTTCTAAGTATCGGAAAGGATGATCAATGGAGGACCCTGAAGCTGCCCAAGCAAAATGGCAAATTGTTCGTGGCACGATATTTTACAGCAACTAACGAAGAAGGGGCCGCTCATGCGGTGGAAATTATTAGAGATGGACAAGATTTCAAGCTAGAAGTTCAATCTGTTGATATATGGAGTGAATGTTTCACCATTACCACTCTGCCCCGGGGAGCTTTCTTAGACTTGAAAAGAGTTGCAATTTTCCGTTGGAATTACTATGTAGCTGTTGCTGATATAGTAGAGGAATCCCTTAACGTCTTGGTGTTGGAAGACTTCAAGAAACACAAATGGAGGAAGATCATTGTTCCCTTGAAATTCTTGAAGGACAATCCAGGTTTAAAAGATGAGATTCGCCCTCATCAAGTTTGGTTAAATTACCTCCGGTTGCACAATGCAGTGAAAAAGAATATTCTCGTGTATGATATGGAAAGGAAGGTGATCAAGGTGATCAAGGTGACGCATACCAAGTCTACGGAGAAAATATATGAATTCCGAAAGCCAAGCCTGGTTACTCTCAAGGGAATGAAGAATGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

297

Amino Acids

34.25

Weight (kDa)

9.37

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 31 - 276 1.5e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 422
AccI GTMKAC 1 cut(s) 824
AciI CCGC 3 cut(s) 257, 420, 428
AcsI RAATTY 2 cut(s) 668, 842
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 180, 214
AgsI TTSAA 7 cut(s) 91, 460, 473, 541, 631, 667, 676
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 2 cut(s) 685, 858
AluBI AGCT 5 cut(s) 94, 355, 463, 527, 578
AluI AGCT 5 cut(s) 94, 355, 463, 527, 578
Ama87I CYCGRG 2 cut(s) 141, 519
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 668, 842
AspS9I GGNCC 3 cut(s) 66, 345, 417
AsuC2I CCSGG 2 cut(s) 520, 521
AsuHPI GGTGA 5 cut(s) 296, 493, 802, 811, 820
AvaI CYCGRG 2 cut(s) 141, 519
AvaII GGWCC 2 cut(s) 66, 345
BarI GAAGNNNNNNTAC 1 cut(s) 872
BauI CACGAG 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 2 cut(s) 687, 860
BclI TGATCA 3 cut(s) 334, 792, 801
BcnI CCSGG 2 cut(s) 520, 521
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 3 cut(s) 210, 464, 892
BisI GCNGC 3 cut(s) 258, 356, 420
BlsI GCNGC 3 cut(s) 259, 357, 421
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 4 cut(s) 520, 521, 687, 860
Bme18I GGWCC 2 cut(s) 66, 345
BmeT110I CYCGRG 2 cut(s) 141, 519
BmgT120I GGNCC 3 cut(s) 66, 345, 417
BmiI GGNNCC 2 cut(s) 347, 418
BmrFI CCNGG 4 cut(s) 520, 521, 687, 860
BmsI GCATC 2 cut(s) 181, 184
BpiI GAAGAC 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 2 cut(s) 520, 521
BsaJI CCNNGG 3 cut(s) 518, 519, 520
BsaWI WCCGGW 1 cut(s) 735
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bse1I ACTGG 2 cut(s) 12, 295
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 2 cut(s) 687, 860
BseDI CCNNGG 3 cut(s) 518, 519, 520
BseGI GGATG 2 cut(s) 236, 337
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 12, 295
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 342
BshFI GGCC 1 cut(s) 419
BsiHKCI CYCGRG 2 cut(s) 141, 519
BsiSI CCGG 2 cut(s) 520, 736
BsnI GGCC 1 cut(s) 419
BsoBI CYCGRG 2 cut(s) 141, 519
Bsp143I GATC 5 cut(s) 60, 334, 651, 792, 801
BspACI CCGC 3 cut(s) 257, 420, 428
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 347, 418
BsrBI CCGCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 2 cut(s) 12, 295
BssECI CCNNGG 3 cut(s) 518, 519, 520
BssMI GATC 5 cut(s) 60, 334, 651, 792, 801
BssSI CACGAG 1 cut(s) 767
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 2 cut(s) 687, 860
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 112, 116
BstDEI CTNAG 3 cut(s) 100, 317, 532
BstF5I GGATG 2 cut(s) 236, 337
BstKTI GATC 5 cut(s) 63, 337, 654, 795, 804
BstMBI GATC 5 cut(s) 60, 334, 651, 792, 801
BstMWI GCNNNNNNNGC 2 cut(s) 361, 425
BstNI CCWGG 2 cut(s) 687, 860
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 4 cut(s) 518, 519, 685, 858
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 630
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 2 cut(s) 236, 337
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 222, 288, 756
Cac8I GCNNGC 2 cut(s) 112, 116
Cfr13I GGNCC 3 cut(s) 66, 345, 417
Cfr9I CCCGGG 1 cut(s) 519
CseI GACGC 1 cut(s) 820
Csp6I GTAC 2 cut(s) 179, 213
CviAII CATG 3 cut(s) 200, 261, 425
CviQI GTAC 2 cut(s) 179, 213
DdeI CTNAG 3 cut(s) 100, 317, 532
DpnI GATC 5 cut(s) 62, 336, 653, 794, 803
DpnII GATC 5 cut(s) 60, 334, 651, 792, 801
DraI TTTAAA 2 cut(s) 310, 693
Eco47I GGWCC 2 cut(s) 66, 345
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 2 cut(s) 141, 519
EcoO109I RGGNCCY 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 842
EcoRII CCWGG 2 cut(s) 685, 858
FaeI CATG 3 cut(s) 203, 264, 428
FatI CATG 3 cut(s) 199, 260, 424
FbaI TGATCA 3 cut(s) 334, 792, 801
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 3 cut(s) 258, 356, 420
FokI GGATG 2 cut(s) 223, 344
Fsp4HI GCNGC 3 cut(s) 258, 356, 420
FspBI CTAG 3 cut(s) 210, 464, 892
GluI GCNGC 3 cut(s) 258, 356, 420
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 520, 736
HgaI GACGC 1 cut(s) 820
Hin1II CATG 3 cut(s) 203, 264, 428
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 5 cut(s) 130, 153, 233, 599, 703
HpaII CCGG 2 cut(s) 520, 736
HphI GGTGA 5 cut(s) 296, 493, 802, 811, 820
Hpy166II GTNNAC 1 cut(s) 825
Hpy188I TCNGA 3 cut(s) 158, 326, 848
Hpy188III TCNNGA 6 cut(s) 64, 122, 141, 150, 631, 673
Hpy8I GTNNAC 1 cut(s) 825
HpyAV CCTTC 3 cut(s) 407, 670, 781
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 6 cut(s) 22, 167, 197, 551, 742, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 425
HpyF3I CTNAG 3 cut(s) 100, 317, 532
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 3 cut(s) 203, 264, 428
Ksp22I TGATCA 3 cut(s) 334, 792, 801
Kzo9I GATC 5 cut(s) 60, 334, 651, 792, 801
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 181, 184
MaeI CTAG 3 cut(s) 210, 464, 892
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 3 cut(s) 284, 808, 862
MalI GATC 5 cut(s) 62, 336, 653, 794, 803
MbiI CCGCTC 1 cut(s) 422
MboI GATC 5 cut(s) 60, 334, 651, 792, 801
MboII GAAGA 4 cut(s) 422, 635, 661, 892
MluCI AATT 8 cut(s) 56, 374, 435, 552, 565, 668, 727, 842
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 542, 600
MnlI CCTC 8 cut(s) 27, 118, 274, 336, 589, 639, 720, 743
MseI TTAA 4 cut(s) 309, 606, 692, 725
MspI CCGG 2 cut(s) 520, 736
MspR9I CCNGG 4 cut(s) 520, 521, 687, 860
MvaI CCWGG 2 cut(s) 687, 860
MwoI GCNNNNNNNGC 2 cut(s) 361, 425
NciI CCSGG 2 cut(s) 520, 521
NdeII GATC 5 cut(s) 60, 334, 651, 792, 801
NlaIII CATG 3 cut(s) 203, 264, 428
NlaIV GGNNCC 2 cut(s) 347, 418
NmuCI GTSAC 2 cut(s) 284, 808
NspI RCATGY 1 cut(s) 264
PaeR7I CTCGAG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PfeI GAWTC 4 cut(s) 153, 233, 599, 703
PkrI GCNGC 3 cut(s) 259, 357, 421
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 685, 858
PspGI CCWGG 2 cut(s) 685, 858
PspN4I GGNNCC 2 cut(s) 347, 418
PspPI GGNCC 3 cut(s) 66, 345, 417
PspPPI RGGWCCY 1 cut(s) 345
RsaI GTAC 2 cut(s) 180, 214
RsaNI GTAC 2 cut(s) 179, 213
SaqAI TTAA 4 cut(s) 309, 606, 692, 725
SatI GCNGC 3 cut(s) 258, 356, 420
Sau3AI GATC 5 cut(s) 60, 334, 651, 792, 801
Sau96I GGNCC 3 cut(s) 66, 345, 417
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 4 cut(s) 520, 521, 687, 860
SfaNI GCATC 2 cut(s) 181, 184
Sfr274I CTCGAG 1 cut(s) 141
SinI GGWCC 2 cut(s) 66, 345
SlaI CTCGAG 1 cut(s) 141
SmaI CCCGGG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 141, 869
SmoI CTYRAG 2 cut(s) 141, 869
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 8 cut(s) 56, 374, 435, 552, 565, 668, 727, 842
SsiI CCGC 3 cut(s) 257, 420, 428
SspI AATATT 1 cut(s) 763
SspMI CTAG 3 cut(s) 210, 464, 892
StyD4I CCNGG 4 cut(s) 518, 519, 685, 858
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 612
TaqI TCGA 2 cut(s) 7, 142
TasI AATT 8 cut(s) 56, 374, 435, 552, 565, 668, 727, 842
TatI WGTACW 2 cut(s) 178, 212
TauI GCSGC 2 cut(s) 260, 422
TfiI GAWTC 4 cut(s) 153, 233, 599, 703
Tru1I TTAA 4 cut(s) 309, 606, 692, 725
Tru9I TTAA 4 cut(s) 309, 606, 692, 725
TscAI CASTG 3 cut(s) 222, 295, 756
TseFI GTSAC 2 cut(s) 284, 808
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 2 cut(s) 284, 808
TspDTI ATGAA 5 cut(s) 225, 257, 312, 855, 893
TspGWI ACGGA 2 cut(s) 548, 842
TspMI CCCGGG 1 cut(s) 519
TspRI CASTG 3 cut(s) 222, 295, 756
VpaK11BI GGWCC 2 cut(s) 66, 345
XapI RAATTY 2 cut(s) 668, 842
XceI RCATGY 1 cut(s) 264
XhoI CTCGAG 1 cut(s) 141
XmaI CCCGGG 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 824
XspI CTAG 3 cut(s) 210, 464, 892
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.