Rorug03G0167000

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000620
Physical Location & Seq
Forward (+)
13923259 .. 13924999
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0167000.1

Sequence Viewer

Length: 327 bp
ATGGGTTTCAGTTTGGGATTCTTGGTCGGAATCTTCGGAGTTCTGATTCTCTTTCATGCCGCTTACTCAACTGTTCAGTATAGGGGATTGTTGAAGATTATGGAGGAGGAGTTTTCAGGACCACCAATCACTGTGGTGGCTGAATTGCTTCTAGGGTTAGTGTTGAGTTTGTGGGCAGGACTTACTGTTCCGGGCACGTTTCTGTCAATACATCCCCATTCTGAAGAGAATAGGATAGTTGCTCTACCGGCTAACCTAGACTTTATGGTCTTCAACCATCGTGGGAAAGTATTTCCCGTGGAGATGGATTTGAAGCTGAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

108

Amino Acids

11.96

Weight (kDa)

6.16

Isoelectric Point (pI)

22.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 94, 274, 313
AleI CACNNNNGTG 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 262
BccI CCATC 2 cut(s) 285, 298
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 2 cut(s) 152, 257
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse118I RCCGGY 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 119, 122
BseSI GKGCMC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 191, 248
Bsp1286I GDGCHC 1 cut(s) 197
BspACI CCGC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 73, 133, 187
Bst6I CTCTTC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 119
CspCI CAANNNNNGTGG 4 cut(s) 114, 149, 262, 297
CviAII CATG 1 cut(s) 56
CviJI RGCY 3 cut(s) 140, 251, 316
CviKI_1 RGCY 3 cut(s) 140, 251, 316
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 57, 81, 101, 266
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 152, 257
GluI GCNGC 1 cut(s) 60
HapII CCGG 2 cut(s) 191, 248
Hin1II CATG 1 cut(s) 59
HinfI GANTC 3 cut(s) 18, 30, 46
HpaII CCGG 2 cut(s) 191, 248
Hpy188I TCNGA 4 cut(s) 29, 38, 45, 223
Hpy188III TCNNGA 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 73, 133, 187
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 59
LpnPI CCDG 4 cut(s) 102, 162, 204, 261
MaeI CTAG 2 cut(s) 152, 257
MaeII ACGT 1 cut(s) 197
MboII GAAGA 4 cut(s) 25, 106, 236, 262
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 2 cut(s) 97, 100
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 2 cut(s) 191, 248
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 192
NlaIII CATG 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 18, 30, 46
PkrI GCNGC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 200, 258, 318
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 143
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 152, 257
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 3 cut(s) 73, 133, 187
TaiI ACGT 1 cut(s) 200
TasI AATT 1 cut(s) 143
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 18, 30, 46
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 2 cut(s) 152, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.