Rh3AG221100

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000620
Physical Location & Seq
Reverse (-)
22710205 .. 22713037
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG221100.1

Sequence Viewer

Length: 1089 bp
ATGATGTCTTGCAATGAAAGAAATAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGCTGCCAGTCGAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAAAAATATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTGAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCACTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCTTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGCGTTTAGAGGATATTATAGCAGAGTAAATAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTACGTTTACTGATGAAGATGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTGGACTGGAATGAAGTTAGTGTTCTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCATGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAAAACGACGGTCGTCCAAAATTTGCTAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTACATATCAATGATGAAGGGGACTACAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGGCCAAATGTGGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGGTAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

362

Amino Acids

42.16

Weight (kDa)

6.36

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 51 1.4e-10 F-box domain
F-box-like PF12937 13 - 47 1.1e-07 F-box-like
FBA_3 PF08268 68 - 282 1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 1058
AccI GTMKAC 1 cut(s) 366
AccII CGCG 1 cut(s) 314
AciI CCGC 2 cut(s) 312, 444
AclWI GGATC 2 cut(s) 174, 335
AcsI RAATTY 4 cut(s) 217, 875, 897, 911
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 2 cut(s) 178, 632
AfiI CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
AgsI TTSAA 7 cut(s) 103, 137, 234, 460, 575, 596, 644
AjnI CCWGG 2 cut(s) 690, 1023
AluBI AGCT 3 cut(s) 427, 505, 523
AluI AGCT 3 cut(s) 427, 505, 523
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 487, 989
AlwI GGATC 2 cut(s) 174, 335
AoxI GGCC 2 cut(s) 848, 981
ApeKI GCWGC 3 cut(s) 76, 184, 446
ApoI RAATTY 4 cut(s) 217, 875, 897, 911
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 2 cut(s) 311, 404
BanII GRGCYC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 63, 171, 433
BccI CCATC 1 cut(s) 114
BciT130I CCWGG 2 cut(s) 692, 1025
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 487, 989
BfaI CTAG 3 cut(s) 267, 279, 635
BfmI CTRYAG 1 cut(s) 943
BglII AGATCT 1 cut(s) 652
BisI GCNGC 3 cut(s) 77, 185, 447
BlsI GCNGC 3 cut(s) 78, 186, 448
Bme1390I CCNGG 2 cut(s) 692, 1025
BmgT120I GGNCC 1 cut(s) 848
BmrFI CCNGG 2 cut(s) 692, 1025
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 1008
BoxI GACNNNNGTC 1 cut(s) 867
Bpu10I CCTNAGC 2 cut(s) 95, 882
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 3 cut(s) 690, 691, 702
Bsc4I CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
Bse1I ACTGG 4 cut(s) 80, 394, 713, 1003
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 692, 1025
BseDI CCNNGG 3 cut(s) 690, 691, 702
BseLI CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 4 cut(s) 80, 394, 713, 1003
BseRI GAGGAG 1 cut(s) 983
BseXI GCAGC 3 cut(s) 63, 171, 433
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 2 cut(s) 850, 983
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 507
BslFI GGGAC 2 cut(s) 425, 953
BslI CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
BsmAI GTCTC 2 cut(s) 487, 989
BsmFI GGGAC 2 cut(s) 425, 953
BsnI GGCC 2 cut(s) 850, 983
Bso31I GGTCTC 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 4 cut(s) 166, 340, 652, 828
BspACI CCGC 2 cut(s) 312, 444
BspANI GGCC 2 cut(s) 850, 983
BspFNI CGCG 1 cut(s) 314
BspPI GGATC 2 cut(s) 174, 335
BspTNI GGTCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 4 cut(s) 80, 394, 713, 1003
BssECI CCNNGG 3 cut(s) 690, 691, 702
BssMI GATC 4 cut(s) 166, 340, 652, 828
BssT1I CCWWGG 1 cut(s) 702
Bst2UI CCWGG 2 cut(s) 692, 1025
Bst4CI ACNGT 2 cut(s) 292, 866
Bst6I CTCTTC 2 cut(s) 254, 690
BstC8I GCNNGC 2 cut(s) 116, 244
BstDEI CTNAG 3 cut(s) 95, 882, 1071
BstFNI CGCG 1 cut(s) 314
BstKTI GATC 4 cut(s) 169, 343, 655, 831
BstMAI GTCTC 2 cut(s) 487, 989
BstMBI GATC 4 cut(s) 166, 340, 652, 828
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 2 cut(s) 692, 1025
BstPAI GACNNNNGTC 1 cut(s) 867
BstSCI CCNGG 2 cut(s) 690, 1023
BstSFI CTRYAG 1 cut(s) 943
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 63, 171, 433
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 2 cut(s) 850, 983
BtgZI GCGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 387, 494
Cac8I GCNNGC 2 cut(s) 116, 244
Cfr13I GGNCC 1 cut(s) 848
Csp6I GTAC 2 cut(s) 177, 631
CviAII CATG 3 cut(s) 209, 784, 826
CviJI RGCY 9 cut(s) 76, 246, 427, 505, 523, 850, 983, 1018, 1023
CviKI_1 RGCY 9 cut(s) 76, 246, 427, 505, 523, 850, 983, 1018, 1023
CviQI GTAC 2 cut(s) 177, 631
DdeI CTNAG 3 cut(s) 95, 882, 1071
DpnI GATC 4 cut(s) 168, 342, 654, 830
DpnII GATC 4 cut(s) 166, 340, 652, 828
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 254, 690
EarI CTCTTC 2 cut(s) 254, 690
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 1 cut(s) 702
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 690, 1023
EcoT14I CCWWGG 1 cut(s) 702
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 3 cut(s) 212, 787, 829
FaqI GGGAC 2 cut(s) 425, 953
FatI CATG 3 cut(s) 208, 783, 825
FauI CCCGC 2 cut(s) 319, 451
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 3 cut(s) 77, 185, 447
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 77, 185, 447
FspBI CTAG 3 cut(s) 267, 279, 635
GluI GCNGC 3 cut(s) 77, 185, 447
HaeIII GGCC 2 cut(s) 850, 983
Hin1II CATG 3 cut(s) 212, 787, 829
HinfI GANTC 7 cut(s) 50, 86, 133, 316, 456, 770, 817
HphI GGTGA 2 cut(s) 311, 404
Hpy166II GTNNAC 3 cut(s) 367, 609, 665
Hpy188I TCNGA 2 cut(s) 171, 305
Hpy188III TCNNGA 2 cut(s) 137, 961
Hpy8I GTNNAC 3 cut(s) 367, 609, 665
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 4 cut(s) 569, 912, 929, 1073
HpyCH4III ACNGT 2 cut(s) 292, 866
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 5 cut(s) 12, 114, 201, 242, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 3 cut(s) 95, 882, 1071
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 3 cut(s) 212, 787, 829
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 4 cut(s) 166, 340, 652, 828
LmnI GCTCC 2 cut(s) 510, 805
Lsp1109I GCAGC 3 cut(s) 63, 171, 433
LweI GCATC 1 cut(s) 1038
MaeI CTAG 3 cut(s) 267, 279, 635
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 789
MalI GATC 4 cut(s) 168, 342, 654, 830
MboI GATC 4 cut(s) 166, 340, 652, 828
MboII GAAGA 5 cut(s) 271, 629, 635, 677, 719
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 7 cut(s) 145, 217, 283, 597, 875, 897, 911
MlyI GAGTC 3 cut(s) 95, 310, 826
MmeI TCCRAC 1 cut(s) 713
MnlI CCTC 6 cut(s) 357, 539, 760, 791, 961, 973
MseI TTAA 3 cut(s) 378, 434, 1035
MslI CAYNNNNRTG 1 cut(s) 927
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 2 cut(s) 692, 1025
MvaI CCWGG 2 cut(s) 692, 1025
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 4 cut(s) 166, 340, 652, 828
NlaIII CATG 3 cut(s) 212, 787, 829
PasI CCCWGGG 1 cut(s) 691
PfeI GAWTC 4 cut(s) 50, 133, 456, 770
PflMI CCANNNNNTGG 1 cut(s) 1058
PkrI GCNGC 3 cut(s) 78, 186, 448
PleI GAGTC 3 cut(s) 94, 310, 825
PpsI GAGTC 3 cut(s) 94, 310, 825
PshAI GACNNNNGTC 1 cut(s) 867
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 690, 1023
PspGI CCWGG 2 cut(s) 690, 1023
PspPI GGNCC 1 cut(s) 848
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 2 cut(s) 178, 632
RsaNI GTAC 2 cut(s) 177, 631
RseI CAYNNNNRTG 1 cut(s) 927
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 3 cut(s) 378, 434, 1035
SatI GCNGC 3 cut(s) 77, 185, 447
Sau3AI GATC 4 cut(s) 166, 340, 652, 828
Sau96I GGNCC 1 cut(s) 848
SchI GAGTC 3 cut(s) 95, 310, 826
ScrFI CCNGG 2 cut(s) 692, 1025
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 1 cut(s) 1038
SfcI CTRYAG 1 cut(s) 943
SmiI ATTTAAAT 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 927
Sse9I AATT 7 cut(s) 145, 217, 283, 597, 875, 897, 911
SsiI CCGC 2 cut(s) 312, 444
SspMI CTAG 3 cut(s) 267, 279, 635
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 690, 1023
StyI CCWWGG 1 cut(s) 702
SwaI ATTTAAAT 1 cut(s) 435
TaaI ACNGT 2 cut(s) 292, 866
TaiI ACGT 1 cut(s) 608
TaqI TCGA 2 cut(s) 84, 287
TasI AATT 7 cut(s) 145, 217, 283, 597, 875, 897, 911
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 4 cut(s) 50, 133, 456, 770
Tru1I TTAA 3 cut(s) 378, 434, 1035
Tru9I TTAA 3 cut(s) 378, 434, 1035
TscAI CASTG 2 cut(s) 394, 494
TseI GCWGC 3 cut(s) 76, 184, 446
TspRI CASTG 2 cut(s) 394, 494
Van91I CCANNNNNTGG 1 cut(s) 1058
XapI RAATTY 4 cut(s) 217, 875, 897, 911
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 3 cut(s) 267, 279, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.