Rroxscaffold_6G00402820

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000620
Physical Location & Seq
Forward (+)
25303344 .. 25304423
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402820.1

Sequence Viewer

Length: 1080 bp
ATGATGTCTTGCAACGAAAGAAATAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGCTGCCAGTCAAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAAAAATATCGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTAAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCAACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCGGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCCTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGTGTTTAGAGGATGTTACTCTAAGGTTGAAGGGGTTTGTCATTTGCTTCAAATTATTAGGTTTACTGATGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACGACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATAAAGTTAGTGTTGTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGCTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAGAACGACGGTCGTCCAAAATTTGCGAAGGAAATAACAAAAATTCTTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGACAGAGACCAAATGTGGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGATAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

359

Amino Acids

41.78

Weight (kDa)

8.12

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 51 8.6e-11 F-box domain
F-box-like PF12937 13 - 48 6.6e-08 F-box-like
FBA_3 PF08268 69 - 279 1e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 366
AciI CCGC 2 cut(s) 312, 444
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 4 cut(s) 217, 866, 888, 902
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 2 cut(s) 178, 623
AfiI CCNNNNNNNGG 4 cut(s) 699, 836, 837, 1049
AgsI TTSAA 7 cut(s) 103, 137, 234, 460, 566, 587, 635
AjnI CCWGG 1 cut(s) 681
AluBI AGCT 3 cut(s) 427, 505, 523
AluI AGCT 3 cut(s) 427, 505, 523
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 3 cut(s) 487, 965, 980
AlwI GGATC 1 cut(s) 335
AoxI GGCC 1 cut(s) 839
ApeKI GCWGC 3 cut(s) 76, 184, 446
ApoI RAATTY 4 cut(s) 217, 866, 888, 902
ArsI GACNNNNNNTTYG 2 cut(s) 793, 825
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 2 cut(s) 311, 404
BanII GRGCYC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 63, 171, 433
BccI CCATC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 683
BclI TGATCA 1 cut(s) 819
BcoDI GTCTC 3 cut(s) 487, 965, 980
BfaI CTAG 3 cut(s) 267, 279, 626
BfmI CTRYAG 1 cut(s) 934
BglII AGATCT 1 cut(s) 643
BisI GCNGC 3 cut(s) 77, 185, 447
BlsI GCNGC 3 cut(s) 78, 186, 448
Bme1390I CCNGG 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 839
BmrFI CCNGG 1 cut(s) 683
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 1 cut(s) 1029
BmuI ACTGGG 1 cut(s) 999
BoxI GACNNNNGTC 1 cut(s) 858
Bpu10I CCTNAGC 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 165
BsaI GGTCTC 2 cut(s) 487, 965
BsaJI CCNNGG 2 cut(s) 681, 682
Bsc4I CCNNNNNNNGG 4 cut(s) 699, 836, 837, 1049
Bse1I ACTGG 4 cut(s) 80, 394, 704, 994
BseBI CCWGG 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 681, 682
BseGI GGATG 1 cut(s) 554
BseLI CCNNNNNNNGG 4 cut(s) 699, 836, 837, 1049
BseNI ACTGG 4 cut(s) 80, 394, 704, 994
BseRI GAGGAG 1 cut(s) 974
BseXI GCAGC 3 cut(s) 63, 171, 433
BsgI GTGCAG 1 cut(s) 261
Bsh1285I CGRYCG 2 cut(s) 169, 859
BshFI GGCC 1 cut(s) 841
BshVI ATCGAT 1 cut(s) 165
BsiEI CGRYCG 2 cut(s) 169, 859
BsiHKAI GWGCWC 1 cut(s) 507
BslFI GGGAC 2 cut(s) 425, 944
BslI CCNNNNNNNGG 4 cut(s) 699, 836, 837, 1049
BsmAI GTCTC 3 cut(s) 487, 965, 980
BsmFI GGGAC 2 cut(s) 425, 944
BsnI GGCC 1 cut(s) 841
Bso31I GGTCTC 2 cut(s) 487, 965
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 4 cut(s) 166, 340, 643, 819
BspACI CCGC 2 cut(s) 312, 444
BspANI GGCC 1 cut(s) 841
BspDI ATCGAT 1 cut(s) 165
BspPI GGATC 1 cut(s) 335
BspTNI GGTCTC 2 cut(s) 487, 965
BsrI ACTGG 4 cut(s) 80, 394, 704, 994
BssECI CCNNGG 2 cut(s) 681, 682
BssMI GATC 4 cut(s) 166, 340, 643, 819
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 2 cut(s) 292, 857
Bst6I CTCTTC 2 cut(s) 254, 681
BstC8I GCNNGC 2 cut(s) 116, 244
BstDEI CTNAG 5 cut(s) 95, 499, 558, 694, 1062
BstF5I GGATG 1 cut(s) 554
BstKTI GATC 4 cut(s) 169, 343, 646, 822
BstMAI GTCTC 3 cut(s) 487, 965, 980
BstMBI GATC 4 cut(s) 166, 340, 643, 819
BstMCI CGRYCG 2 cut(s) 169, 859
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 683
BstPAI GACNNNNGTC 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 1 cut(s) 934
BstV1I GCAGC 3 cut(s) 63, 171, 433
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 1 cut(s) 841
BsuTUI ATCGAT 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 387, 494
Cac8I GCNNGC 2 cut(s) 116, 244
Cfr13I GGNCC 1 cut(s) 839
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 2 cut(s) 177, 622
CviAII CATG 2 cut(s) 209, 817
CviJI RGCY 8 cut(s) 76, 246, 427, 505, 523, 841, 1009, 1014
CviKI_1 RGCY 8 cut(s) 76, 246, 427, 505, 523, 841, 1009, 1014
CviQI GTAC 2 cut(s) 177, 622
DdeI CTNAG 5 cut(s) 95, 499, 558, 694, 1062
DpnI GATC 4 cut(s) 168, 342, 645, 821
DpnII GATC 4 cut(s) 166, 340, 643, 819
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 254, 681
EarI CTCTTC 2 cut(s) 254, 681
Ecl136II GAGCTC 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 2 cut(s) 487, 965
Eco53kI GAGCTC 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 507
FaeI CATG 2 cut(s) 212, 820
FaqI GGGAC 2 cut(s) 425, 944
FatI CATG 2 cut(s) 208, 816
FauI CCCGC 2 cut(s) 319, 451
FbaI TGATCA 1 cut(s) 819
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 3 cut(s) 77, 185, 447
FokI GGATG 1 cut(s) 561
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 77, 185, 447
FspBI CTAG 3 cut(s) 267, 279, 626
GluI GCNGC 3 cut(s) 77, 185, 447
HaeIII GGCC 1 cut(s) 841
Hin1II CATG 2 cut(s) 212, 820
HinfI GANTC 5 cut(s) 50, 133, 456, 761, 808
HphI GGTGA 2 cut(s) 311, 404
Hpy166II GTNNAC 3 cut(s) 367, 600, 656
Hpy188I TCNGA 2 cut(s) 171, 305
Hpy188III TCNNGA 2 cut(s) 137, 952
Hpy8I GTNNAC 3 cut(s) 367, 600, 656
Hpy99I CGWCG 2 cut(s) 670, 857
HpyAV CCTTC 4 cut(s) 560, 868, 920, 1064
HpyCH4III ACNGT 2 cut(s) 292, 857
HpyCH4V TGCA 6 cut(s) 12, 114, 201, 242, 449, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 5 cut(s) 95, 499, 558, 694, 1062
Hsp92II CATG 2 cut(s) 212, 820
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 4 cut(s) 166, 340, 643, 819
LmnI GCTCC 2 cut(s) 510, 796
Lsp1109I GCAGC 3 cut(s) 63, 171, 433
LweI GCATC 1 cut(s) 1029
MaeI CTAG 3 cut(s) 267, 279, 626
MaeIII GTNAC 1 cut(s) 551
MalI GATC 4 cut(s) 168, 342, 645, 821
MboI GATC 4 cut(s) 166, 340, 643, 819
MboII GAAGA 5 cut(s) 271, 620, 623, 626, 668
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 7 cut(s) 145, 217, 283, 588, 866, 888, 902
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 1 cut(s) 704
MnlI CCTC 5 cut(s) 357, 539, 751, 782, 952
MseI TTAA 3 cut(s) 378, 434, 1026
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 4 cut(s) 166, 340, 643, 819
NlaIII CATG 2 cut(s) 212, 820
PasI CCCWGGG 1 cut(s) 682
PfeI GAWTC 4 cut(s) 50, 133, 456, 761
PflMI CCANNNNNTGG 1 cut(s) 1049
PkrI GCNGC 3 cut(s) 78, 186, 448
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
PshAI GACNNNNGTC 1 cut(s) 858
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspPI GGNCC 1 cut(s) 839
PsuI RGATCY 1 cut(s) 643
PvuI CGATCG 1 cut(s) 169
RsaI GTAC 2 cut(s) 178, 623
RsaNI GTAC 2 cut(s) 177, 622
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 3 cut(s) 378, 434, 1026
SatI GCNGC 3 cut(s) 77, 185, 447
Sau3AI GATC 4 cut(s) 166, 340, 643, 819
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 1 cut(s) 1029
SfcI CTRYAG 1 cut(s) 934
SmiI ATTTAAAT 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 918
Sse9I AATT 7 cut(s) 145, 217, 283, 588, 866, 888, 902
SsiI CCGC 2 cut(s) 312, 444
SspMI CTAG 3 cut(s) 267, 279, 626
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 681
SwaI ATTTAAAT 1 cut(s) 435
TaaI ACNGT 2 cut(s) 292, 857
TaqI TCGA 2 cut(s) 165, 287
TasI AATT 7 cut(s) 145, 217, 283, 588, 866, 888, 902
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 4 cut(s) 50, 133, 456, 761
Tru1I TTAA 3 cut(s) 378, 434, 1026
Tru9I TTAA 3 cut(s) 378, 434, 1026
TscAI CASTG 2 cut(s) 394, 494
TseI GCWGC 3 cut(s) 76, 184, 446
TspDTI ATGAA 7 cut(s) 139, 228, 348, 621, 767, 933, 939
TspRI CASTG 2 cut(s) 394, 494
Van91I CCANNNNNTGG 1 cut(s) 1049
XapI RAATTY 4 cut(s) 217, 866, 888, 902
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 3 cut(s) 267, 279, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.