Rmu_sc0008074.1_g000017

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008074.1
OG0000620
Physical Location & Seq
Reverse (-)
50156 .. 51233
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008074.1_g000017.1.cds

Sequence Viewer

Length: 690 bp
atgttttcttctctttcttcttctgggttttttttttttctttcgacagcaggagttgctgctgccagggcagactgcaggggcacgggctgcaagtgcttggcgggggtagctgcaagtgcttgggctgttcgcggcttgggctgctgggggcaggacgcagggagcagcaggaagttgcggcaggaggtatggcagtgggctgcaggcttgcggcaggagatcgagatagaggctggtgatgtgcgcggctggtgtgcagcgcgggctgcggcagaattttcgtacgtgtctttgctaaggtgcaagtgtgtgtgcaagcaatggtgttcgttgattcaagatgacaagttcgttctaaaacatatggatcgaagccgtccaaccgatcagttttatcgtaccgctgatgaaaagttcaagtttatttcaacttatggaggcttgtgtttggagagaagtcttagtaattctagggtttttcgtatcagaaaccctgcagcccaagaagtgctatacttgcctgatggacctgagtatactaacaccatggattttgcttttaattcttctactcgcgagtgtaaagtggtatgttgttgttgggagaagaacgaagttcacagtactgaagcaagtttgaaaattataactgttggaaaagatgagcaatggcatggagaactctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

229

Amino Acids

25.61

Weight (kDa)

8.18

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AccI GTMKAC 1 cut(s) 539
AccII CGCG 4 cut(s) 135, 249, 265, 579
AciI CCGC 8 cut(s) 104, 135, 181, 214, 249, 265, 272, 405
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 3 cut(s) 287, 403, 628
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 4 cut(s) 341, 421, 432, 643
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 2 cut(s) 249, 265
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 86
BccI CCATC 1 cut(s) 521
BceAI ACGGC 1 cut(s) 363
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 1 cut(s) 67
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 3 cut(s) 76, 204, 498
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 530
BmgT120I GGNCC 1 cut(s) 530
BmrFI CCNGG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 66, 549
Bse3DI GCAATG 2 cut(s) 329, 677
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 66, 549
BseMI GCAATG 2 cut(s) 329, 677
BseMII CTCAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 4 cut(s) 135, 249, 265, 579
BsiWI CGTACG 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 222, 370, 388
Bsp19I CCATGG 1 cut(s) 549
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 8 cut(s) 104, 135, 181, 214, 249, 265, 272, 405
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 4 cut(s) 135, 249, 265, 579
BspMAI CTGCAG 3 cut(s) 80, 208, 502
BspPI GGATC 1 cut(s) 378
BsrDI GCAATG 2 cut(s) 329, 677
BssECI CCNNGG 2 cut(s) 66, 549
BssMI GATC 3 cut(s) 222, 370, 388
BssNAI GTATAC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 549
Bst1107I GTATAC 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 626, 655
BstAPI GCANNNNNTGC 2 cut(s) 56, 90
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 4 cut(s) 208, 212, 267, 320
BstDEI CTNAG 3 cut(s) 299, 464, 534
BstDSI CCRYGG 1 cut(s) 549
BstFNI CGCG 4 cut(s) 135, 249, 265, 579
BstHHI GCGC 2 cut(s) 249, 265
BstKTI GATC 3 cut(s) 225, 373, 391
BstMBI GATC 3 cut(s) 222, 370, 388
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstSFI CTRYAG 3 cut(s) 76, 204, 498
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 4 cut(s) 135, 249, 265, 579
BstZ17I GTATAC 1 cut(s) 540
BtgI CCRYGG 1 cut(s) 549
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
BtuMI TCGCGA 1 cut(s) 579
Cac8I GCNNGC 4 cut(s) 208, 212, 267, 320
CfoI GCGC 2 cut(s) 249, 265
Cfr13I GGNCC 1 cut(s) 530
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 286, 402, 627
CviAII CATG 2 cut(s) 550, 677
CviQI GTAC 3 cut(s) 286, 402, 627
DdeI CTNAG 3 cut(s) 299, 464, 534
DpnI GATC 3 cut(s) 224, 372, 390
DpnII GATC 3 cut(s) 222, 370, 388
Eco130I CCWWGG 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 2 cut(s) 553, 680
FatI CATG 2 cut(s) 549, 676
FauI CCCGC 2 cut(s) 97, 258
FauNDI CATATG 1 cut(s) 366
FblI GTMKAC 1 cut(s) 539
FspBI CTAG 1 cut(s) 474
GlaI GCGC 2 cut(s) 248, 264
GsaI CCCAGC 1 cut(s) 151
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 249, 265
Hin1II CATG 2 cut(s) 553, 680
Hin6I GCGC 2 cut(s) 247, 263
HinP1I GCGC 2 cut(s) 247, 263
HinfI GANTC 1 cut(s) 337
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 540, 622
Hpy188I TCNGA 2 cut(s) 491, 689
Hpy188III TCNNGA 3 cut(s) 226, 341, 578
Hpy8I GTNNAC 2 cut(s) 540, 622
HpyCH4III ACNGT 2 cut(s) 626, 655
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 8 cut(s) 78, 93, 116, 206, 260, 306, 318, 500
HpyF3I CTNAG 3 cut(s) 299, 464, 534
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 2 cut(s) 553, 680
HspAI GCGC 2 cut(s) 247, 263
Kzo9I GATC 3 cut(s) 222, 370, 388
LmnI GCTCC 1 cut(s) 165
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 288
MalI GATC 3 cut(s) 224, 372, 390
MboI GATC 3 cut(s) 222, 370, 388
MboII GAAGA 4 cut(s) 9, 12, 561, 622
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 4 cut(s) 278, 469, 565, 645
MmeI TCCRAC 2 cut(s) 407, 637
MnlI CCTC 3 cut(s) 181, 226, 434
MseI TTAA 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 407
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 4 cut(s) 135, 249, 265, 579
NcoI CCATGG 1 cut(s) 549
NdeI CATATG 1 cut(s) 366
NdeII GATC 3 cut(s) 222, 370, 388
NlaIII CATG 2 cut(s) 553, 680
NruI TCGCGA 1 cut(s) 579
PfeI GAWTC 1 cut(s) 337
Pfl23II CGTACG 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 289
PsiI TTATAA 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 65
PspLI CGTACG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 530
PstI CTGCAG 3 cut(s) 80, 208, 502
RruI TCGCGA 1 cut(s) 579
RsaI GTAC 3 cut(s) 287, 403, 628
RsaNI GTAC 3 cut(s) 286, 402, 627
SaqAI TTAA 1 cut(s) 564
Sau3AI GATC 3 cut(s) 222, 370, 388
Sau96I GGNCC 1 cut(s) 530
ScaI AGTACT 1 cut(s) 628
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 86
SetI ASST 5 cut(s) 115, 192, 291, 305, 535
SfcI CTRYAG 3 cut(s) 76, 204, 498
SinI GGWCC 1 cut(s) 530
Sse9I AATT 4 cut(s) 278, 469, 565, 645
SsiI CCGC 8 cut(s) 104, 135, 181, 214, 249, 265, 272, 405
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 2 cut(s) 626, 655
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 44, 225, 373
TasI AATT 4 cut(s) 278, 469, 565, 645
TatI WGTACW 1 cut(s) 626
TauI GCSGC 5 cut(s) 138, 184, 217, 252, 275
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 539
XspI CTAG 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.