Rroxscaffold_6G00403180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000620
Physical Location & Seq
Reverse (-)
25616835 .. 25618412
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403180.1

Sequence Viewer

Length: 168 bp
ATGATAATCATGTTTCTCTCTACATCTCAGTTGAGATGGTTGTTTATTAATTGGAATCATACAGAAATGCCACACGTGGATGAGAAATTCAAGACTGAAGATCAAATTCAGCTCATGTATCTACTGTCTCCGAGCAATCATTTGGATGAAGCGTCTTATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.68

Weight (kDa)

5.36

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 86, 105
AcuI CTGAAG 1 cut(s) 117
AcvI CACGTG 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 86, 105
AseI ATTAAT 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 76
BccI CCATC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 76
BseGI GGATG 2 cut(s) 85, 151
BseMII CTCAG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 40
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 85, 151
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 85, 151
CseI GACGC 1 cut(s) 141
CviAII CATG 2 cut(s) 10, 115
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 76
FaeI CATG 2 cut(s) 13, 118
FaiI YATR 3 cut(s) 11, 60, 116
FatI CATG 2 cut(s) 9, 114
FokI GGATG 2 cut(s) 92, 158
FspEI CC 6 cut(s) 22, 37, 62, 84, 128, 144
HgaI GACGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 13, 118
HinfI GANTC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 13, 118
Kzo9I GATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 110
MluCI AATT 3 cut(s) 49, 86, 105
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 78, 144
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 13, 118
PfeI GAWTC 1 cut(s) 55
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 48
PspCI CACGTG 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 78, 144
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 100
SetI ASST 2 cut(s) 78, 114
SgeI CNNG 6 cut(s) 22, 86, 88, 103, 127, 144
SmiMI CAYNNNNRTG 2 cut(s) 78, 144
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 3 cut(s) 49, 86, 105
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 78
TasI AATT 3 cut(s) 49, 86, 105
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 162
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 2 cut(s) 86, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.