Rmu_sc0005645.1_g000010

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005645.1
OG0000620
Physical Location & Seq
Reverse (-)
49310 .. 50218
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005645.1_g000010.1.cds

Sequence Viewer

Length: 909 bp
atgctgctcttttatccttgcaaatcccatgatgaaaattttgagtttgtttcaagttgtgcaggcttgtgtatggagaagagtgctagtgagagtgctagtaattcgacagtttttcgtatcagaaaccccgcgactcaccaagtgctttacttgcccgatccacctccatatacttcatcagtagactttgcttttaactcattcactggtgagtgtaaagttctatgtttttattgggaaaagctatatttaaatgtccccgctgcatttggattcaaagttataaccattggaaaagatgagcagtggagacctttagagctccccgaccaaaataagctacgcaaaaaaagggcgtttagaggatattatagcagagtaaataaggttgaaggggtttgtcatttgtttcaaattattacgtttactgatgaagaagaagatatgtacctagaagttcaatctttagatctatggagtgaacattttacaacgaatactcttccccagggagtttccttagactggaatgaagttagtgttcttcgttggaataactgcttatcagtcggttatatgaaagaggaatcccttgacctcatggtgttacaagactttaaggagcgaaaatggagtccaaacatgatcatcattcccgtcaaagggccaaaaaaaaacgacggtcgtccaaaatttgctaaggaaataacaaaaattccttctaccgaatttgatttgcatatcaatgatgaaggggactatagactttcatctgtcaggacagaggagatgagagaggccaaatgtggagagactggggagatattacataagccaagcctgataagttttaagggaataatgatgccagaaaatggttattaccctaagaatgaaggtaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

302

Amino Acids

34.93

Weight (kDa)

5.66

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 878
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 132, 264
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 4 cut(s) 37, 695, 717, 731
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 4 cut(s) 528, 665, 666, 878
AgsI TTSAA 5 cut(s) 54, 280, 395, 416, 464
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 3 cut(s) 247, 325, 343
AluI AGCT 3 cut(s) 247, 325, 343
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 2 cut(s) 307, 809
AlwI GGATC 1 cut(s) 155
AoxI GGCC 2 cut(s) 668, 801
ApeKI GCWGC 2 cut(s) 4, 266
ApoI RAATTY 4 cut(s) 37, 695, 717, 731
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 131, 224
BanII GRGCYC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 1 cut(s) 648
BcoDI GTCTC 2 cut(s) 307, 809
BfaI CTAG 3 cut(s) 87, 99, 455
BfmI CTRYAG 1 cut(s) 763
BglII AGATCT 1 cut(s) 472
BisI GCNGC 2 cut(s) 5, 267
BlsI GCNGC 2 cut(s) 6, 268
Bme1390I CCNGG 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 668
BmrFI CCNGG 1 cut(s) 512
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 828
BoxI GACNNNNGTC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 510, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 528, 665, 666, 878
Bse1I ACTGG 3 cut(s) 214, 533, 823
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 2 cut(s) 510, 511
BseLI CCNNNNNNNGG 4 cut(s) 528, 665, 666, 878
BseNI ACTGG 3 cut(s) 214, 533, 823
BseRI GAGGAG 1 cut(s) 803
BseXI GCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 688
BshFI GGCC 2 cut(s) 670, 803
BsiEI CGRYCG 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 327
BslFI GGGAC 2 cut(s) 245, 773
BslI CCNNNNNNNGG 4 cut(s) 528, 665, 666, 878
BsmAI GTCTC 2 cut(s) 307, 809
BsmFI GGGAC 2 cut(s) 245, 773
BsnI GGCC 2 cut(s) 670, 803
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 160, 472, 648
BspACI CCGC 2 cut(s) 132, 264
BspANI GGCC 2 cut(s) 670, 803
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 3 cut(s) 214, 533, 823
BssECI CCNNGG 2 cut(s) 510, 511
BssMI GATC 3 cut(s) 160, 472, 648
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 112, 686
Bst6I CTCTTC 2 cut(s) 74, 510
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 3 cut(s) 523, 702, 891
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 3 cut(s) 163, 475, 651
BstMAI GTCTC 2 cut(s) 307, 809
BstMBI GATC 3 cut(s) 160, 472, 648
BstMCI CGRYCG 1 cut(s) 688
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 512
BstPAI GACNNNNGTC 1 cut(s) 687
BstSCI CCNGG 1 cut(s) 510
BstSFI CTRYAG 1 cut(s) 763
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 2 cut(s) 670, 803
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 2 cut(s) 207, 314
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 29, 604, 646
CviJI RGCY 8 cut(s) 66, 247, 325, 343, 670, 803, 838, 843
CviKI_1 RGCY 8 cut(s) 66, 247, 325, 343, 670, 803, 838, 843
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 523, 702, 891
DpnI GATC 3 cut(s) 162, 474, 650
DpnII GATC 3 cut(s) 160, 472, 648
DraI TTTAAA 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 74, 510
EarI CTCTTC 2 cut(s) 74, 510
Ecl136II GAGCTC 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 327
FaeI CATG 3 cut(s) 32, 607, 649
FaqI GGGAC 2 cut(s) 245, 773
FatI CATG 3 cut(s) 28, 603, 645
FauI CCCGC 2 cut(s) 139, 271
FbaI TGATCA 1 cut(s) 648
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 5, 267
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 2 cut(s) 5, 267
FspBI CTAG 3 cut(s) 87, 99, 455
GluI GCNGC 2 cut(s) 5, 267
HaeIII GGCC 2 cut(s) 670, 803
Hin1II CATG 3 cut(s) 32, 607, 649
HinfI GANTC 4 cut(s) 136, 276, 590, 637
HphI GGTGA 2 cut(s) 131, 224
Hpy166II GTNNAC 3 cut(s) 187, 429, 485
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 781
Hpy8I GTNNAC 3 cut(s) 187, 429, 485
Hpy99I CGWCG 1 cut(s) 686
HpyAV CCTTC 4 cut(s) 389, 732, 749, 893
HpyCH4III ACNGT 2 cut(s) 112, 686
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 4 cut(s) 21, 62, 269, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 3 cut(s) 523, 702, 891
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 3 cut(s) 32, 607, 649
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 3 cut(s) 160, 472, 648
LmnI GCTCC 2 cut(s) 330, 625
LpnPI CCDG 9 cut(s) 48, 195, 497, 514, 524, 766, 804, 857, 885
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 858
MaeI CTAG 3 cut(s) 87, 99, 455
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 609
MalI GATC 3 cut(s) 162, 474, 650
MboI GATC 3 cut(s) 160, 472, 648
MboII GAAGA 6 cut(s) 91, 449, 452, 455, 497, 539
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 6 cut(s) 37, 103, 417, 695, 717, 731
MlyI GAGTC 2 cut(s) 130, 646
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 6 cut(s) 177, 359, 580, 611, 781, 793
MseI TTAA 4 cut(s) 198, 254, 621, 855
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 512
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 3 cut(s) 160, 472, 648
NlaIII CATG 3 cut(s) 32, 607, 649
PasI CCCWGGG 1 cut(s) 511
PfeI GAWTC 2 cut(s) 276, 590
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 2 cut(s) 6, 268
PleI GAGTC 2 cut(s) 130, 645
PpsI GAGTC 2 cut(s) 130, 645
PshAI GACNNNNGTC 1 cut(s) 687
PsiI TTATAA 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspPI GGNCC 1 cut(s) 668
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 747
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 4 cut(s) 198, 254, 621, 855
SatI GCNGC 2 cut(s) 5, 267
Sau3AI GATC 3 cut(s) 160, 472, 648
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 130, 646
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 1 cut(s) 858
SfcI CTRYAG 1 cut(s) 763
SmiI ATTTAAAT 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 6 cut(s) 37, 103, 417, 695, 717, 731
SsiI CCGC 2 cut(s) 132, 264
SspMI CTAG 3 cut(s) 87, 99, 455
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 510
SwaI ATTTAAAT 1 cut(s) 255
TaaI ACNGT 2 cut(s) 112, 686
TaiI ACGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 107
TasI AATT 6 cut(s) 37, 103, 417, 695, 717, 731
TfiI GAWTC 2 cut(s) 276, 590
Tru1I TTAA 4 cut(s) 198, 254, 621, 855
Tru9I TTAA 4 cut(s) 198, 254, 621, 855
TscAI CASTG 2 cut(s) 214, 314
TseI GCWGC 2 cut(s) 4, 266
TspDTI ATGAA 7 cut(s) 48, 168, 450, 549, 596, 762, 768
TspRI CASTG 2 cut(s) 214, 314
Van91I CCANNNNNTGG 1 cut(s) 878
XapI RAATTY 4 cut(s) 37, 695, 717, 731
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 3 cut(s) 87, 99, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.