Rh4CG009600

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000620
Physical Location & Seq
Reverse (-)
1655039 .. 1655932
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG009600.1

Sequence Viewer

Length: 894 bp
ATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTAATTCGACAGTTTTTCGGATCAGAAACCCCGCGACTCACCAAGTGCTATACTTGCCTGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCCTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGTGTTTAGAGGATGTTACTCTAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTAGGTTTACTGATCAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATGAAGTTAGTGTTGTTCTTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAGAACGACGGTCGTCCAAAATTTGCGAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGGTAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

297

Amino Acids

34.48

Weight (kDa)

5.95

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 18 - 222 1.7e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 138, 273
AclWI GGATC 3 cut(s) 12, 134, 161
AcsI RAATTY 4 cut(s) 55, 695, 717, 731
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 16, 452
AfiI CCNNNNNNNGG 4 cut(s) 528, 665, 666, 863
AgsI TTSAA 5 cut(s) 72, 289, 395, 416, 464
AjnI CCWGG 2 cut(s) 510, 828
AluBI AGCT 3 cut(s) 253, 334, 352
AluI AGCT 3 cut(s) 253, 334, 352
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 316, 794
AlwI GGATC 3 cut(s) 12, 134, 161
AoxI GGCC 1 cut(s) 668
ApeKI GCWGC 2 cut(s) 22, 275
ApoI RAATTY 4 cut(s) 55, 695, 717, 731
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 137, 230
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 9, 262
BciT130I CCWGG 2 cut(s) 512, 830
BclI TGATCA 2 cut(s) 433, 648
BcoDI GTCTC 2 cut(s) 316, 794
BfaI CTAG 2 cut(s) 105, 455
BfmI CTRYAG 1 cut(s) 763
BglII AGATCT 1 cut(s) 472
BisI GCNGC 2 cut(s) 23, 276
BlsI GCNGC 2 cut(s) 24, 277
Bme1390I CCNGG 2 cut(s) 512, 830
BmgT120I GGNCC 1 cut(s) 668
BmrFI CCNGG 2 cut(s) 512, 830
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 813
BoxI GACNNNNGTC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 510, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 528, 665, 666, 863
Bse1I ACTGG 3 cut(s) 220, 533, 808
BseBI CCWGG 2 cut(s) 512, 830
BseDI CCNNGG 2 cut(s) 510, 511
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 4 cut(s) 528, 665, 666, 863
BseNI ACTGG 3 cut(s) 220, 533, 808
BseRI GAGGAG 1 cut(s) 803
BseXI GCAGC 2 cut(s) 9, 262
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 688
BshFI GGCC 1 cut(s) 670
BsiEI CGRYCG 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 336
BslFI GGGAC 2 cut(s) 254, 773
BslI CCNNNNNNNGG 4 cut(s) 528, 665, 666, 863
BsmAI GTCTC 2 cut(s) 316, 794
BsmFI GGGAC 2 cut(s) 254, 773
BsnI GGCC 1 cut(s) 670
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 6 cut(s) 4, 126, 166, 433, 472, 648
BspACI CCGC 2 cut(s) 138, 273
BspANI GGCC 1 cut(s) 670
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 3 cut(s) 12, 134, 161
BspTNI GGTCTC 1 cut(s) 316
BsrI ACTGG 3 cut(s) 220, 533, 808
BssECI CCNNGG 2 cut(s) 510, 511
BssMI GATC 6 cut(s) 4, 126, 166, 433, 472, 648
Bst2UI CCWGG 2 cut(s) 512, 830
Bst4CI ACNGT 2 cut(s) 118, 686
Bst6I CTCTTC 2 cut(s) 92, 510
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 328, 387, 523, 876
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 6 cut(s) 7, 129, 169, 436, 475, 651
BstMAI GTCTC 2 cut(s) 316, 794
BstMBI GATC 6 cut(s) 4, 126, 166, 433, 472, 648
BstMCI CGRYCG 1 cut(s) 688
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 2 cut(s) 512, 830
BstPAI GACNNNNGTC 1 cut(s) 687
BstSCI CCNGG 2 cut(s) 510, 828
BstSFI CTRYAG 1 cut(s) 763
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 9, 262
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 1 cut(s) 670
BtsCI GGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 213, 323
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 2 cut(s) 15, 451
CviAII CATG 2 cut(s) 47, 646
CviJI RGCY 7 cut(s) 84, 253, 334, 352, 670, 823, 828
CviKI_1 RGCY 7 cut(s) 84, 253, 334, 352, 670, 823, 828
CviQI GTAC 2 cut(s) 15, 451
DdeI CTNAG 4 cut(s) 328, 387, 523, 876
DpnI GATC 6 cut(s) 6, 128, 168, 435, 474, 650
DpnII GATC 6 cut(s) 4, 126, 166, 433, 472, 648
DraI TTTAAA 1 cut(s) 261
DraIII CACNNNGTG 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 92, 510
EarI CTCTTC 2 cut(s) 92, 510
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 510, 828
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 2 cut(s) 50, 649
FaqI GGGAC 2 cut(s) 254, 773
FatI CATG 2 cut(s) 46, 645
FauI CCCGC 2 cut(s) 145, 280
FbaI TGATCA 2 cut(s) 433, 648
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 23, 276
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 23, 276
FspBI CTAG 2 cut(s) 105, 455
GluI GCNGC 2 cut(s) 23, 276
HaeIII GGCC 1 cut(s) 670
Hin1II CATG 2 cut(s) 50, 649
HinfI GANTC 4 cut(s) 142, 285, 590, 637
HphI GGTGA 2 cut(s) 137, 230
Hpy166II GTNNAC 3 cut(s) 193, 429, 485
Hpy188I TCNGA 3 cut(s) 9, 126, 131
Hpy188III TCNNGA 2 cut(s) 437, 781
Hpy8I GTNNAC 3 cut(s) 193, 429, 485
Hpy99I CGWCG 1 cut(s) 686
HpyAV CCTTC 5 cut(s) 389, 697, 732, 749, 878
HpyCH4III ACNGT 2 cut(s) 118, 686
HpyCH4V TGCA 4 cut(s) 39, 80, 278, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 4 cut(s) 328, 387, 523, 876
Hsp92II CATG 2 cut(s) 50, 649
Ksp22I TGATCA 2 cut(s) 433, 648
Kzo9I GATC 6 cut(s) 4, 126, 166, 433, 472, 648
LmnI GCTCC 2 cut(s) 339, 625
Lsp1109I GCAGC 2 cut(s) 9, 262
LweI GCATC 1 cut(s) 843
MaeI CTAG 2 cut(s) 105, 455
MaeIII GTNAC 2 cut(s) 380, 609
MalI GATC 6 cut(s) 6, 128, 168, 435, 474, 650
MboI GATC 6 cut(s) 4, 126, 166, 433, 472, 648
MboII GAAGA 4 cut(s) 109, 452, 455, 497
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 6 cut(s) 55, 109, 417, 695, 717, 731
MlyI GAGTC 2 cut(s) 136, 646
MnlI CCTC 5 cut(s) 183, 368, 580, 611, 781
MseI TTAA 3 cut(s) 204, 260, 840
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 512, 830
MvaI CCWGG 2 cut(s) 512, 830
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 6 cut(s) 4, 126, 166, 433, 472, 648
NlaIII CATG 2 cut(s) 50, 649
PasI CCCWGGG 1 cut(s) 511
PfeI GAWTC 2 cut(s) 285, 590
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 2 cut(s) 24, 277
PleI GAGTC 2 cut(s) 136, 645
PpsI GAGTC 2 cut(s) 136, 645
PshAI GACNNNNGTC 1 cut(s) 687
PsiI TTATAA 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 510, 828
PspGI CCWGG 2 cut(s) 510, 828
PspPI GGNCC 1 cut(s) 668
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 2 cut(s) 16, 452
RsaNI GTAC 2 cut(s) 15, 451
RseI CAYNNNNRTG 1 cut(s) 747
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 204, 260, 840
SatI GCNGC 2 cut(s) 23, 276
Sau3AI GATC 6 cut(s) 4, 126, 166, 433, 472, 648
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 136, 646
ScrFI CCNGG 2 cut(s) 512, 830
SduI GDGCHC 1 cut(s) 336
SetI ASST 9 cut(s) 175, 255, 336, 354, 393, 428, 456, 603, 889
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 1 cut(s) 763
SmiI ATTTAAAT 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 6 cut(s) 55, 109, 417, 695, 717, 731
SsiI CCGC 2 cut(s) 138, 273
SspMI CTAG 2 cut(s) 105, 455
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 510, 828
SwaI ATTTAAAT 1 cut(s) 261
TaaI ACNGT 2 cut(s) 118, 686
TaqI TCGA 1 cut(s) 113
TasI AATT 6 cut(s) 55, 109, 417, 695, 717, 731
TatI WGTACW 1 cut(s) 14
TfiI GAWTC 2 cut(s) 285, 590
Tru1I TTAA 3 cut(s) 204, 260, 840
Tru9I TTAA 3 cut(s) 204, 260, 840
TscAI CASTG 2 cut(s) 220, 323
TseI GCWGC 2 cut(s) 22, 275
TspDTI ATGAA 6 cut(s) 66, 174, 549, 596, 762, 768
TspRI CASTG 2 cut(s) 220, 323
Van91I CCANNNNNTGG 1 cut(s) 863
XapI RAATTY 4 cut(s) 55, 695, 717, 731
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 105, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.