Rroxscaffold_1G00058030

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000620
Physical Location & Seq
Reverse (-)
79956845 .. 79958909
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058030.1

Sequence Viewer

Length: 804 bp
ATGATGAAAATGTCAAACGTGTTACAGATCGAAGTGACTGGCTTGTTTCTGGAGGAGAGTCTTACTACTCGAGTTTTCCGAATCAGAAACTTTGCAACGCACCAAGTCCTCTACTTGCCCTATGCAGGTAATGCTACTACCGCAATGGGTTTTGTTTTAGATTCATCCACTGGTGAGTGTAAAGTGGCATGTTTTTATAAGAATGAGGAGGGTGACTTTGGCCGTGAAGTAGGCGTAAAAGTTCTGAGTATCGGAAAGGATGATCAATGGAGGACCCTGAAGCTGCCCAACCAAAATGACAAATTGTTCCGGAAAGGATATTTTAGAGCAACTCACGAAGAAGGGGCCGCTCATTTGGTGGAAATCATTAGAGATGGAGAAGATTTCAAGCTAGAAGTTCAATCTTTTGATTTGTGGAGTGAATGTTTCACCATTACCACTCTGCCCCGCGGATCTTTCTTAGACTTGAAAAGAGTTAGAGTTTTTCGTTGGAATCGATATGTAGCTGTTGCTGATATAGTAGGGGAATCCCTTAACGTCTTGGTGTTACAAGACTTCAAGAAGCACAAATGGAGTAAGATCACTGTTCCCCTGAAGTTTTTGAAGGACGACCCGGTTTTGAAAGATCAAATTAAACCTCGTAGAGCTAATACTTTTGGTGAACTCCAGTTACACAATGCAGTGAGAAATAATATTCTTTTATATGATATGAAACGGGAGATGATTCAAGCCACCATTAACACAGACTCCTCAGAAAAAATATTCACTTTCCATAAGCCAAGCCTGGTTACCCTTAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

267

Amino Acids

30.9

Weight (kDa)

9.01

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 11 - 255 3.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 350
AccII CGCG 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 4 cut(s) 141, 348, 448, 450
AclWI GGATC 1 cut(s) 460
AcoI YGGCCR 1 cut(s) 220
AcuI CTGAAG 2 cut(s) 299, 614
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 7 cut(s) 388, 401, 469, 559, 604, 622, 728
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 4 cut(s) 283, 391, 506, 647
AluI AGCT 4 cut(s) 283, 391, 506, 647
AlwI GGATC 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 2 cut(s) 220, 345
ApeKI GCWGC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 273, 345
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 185, 224, 421, 671
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 794
BbvI GCAGC 1 cut(s) 270
BccI CCATC 1 cut(s) 368
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 785
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 614
BfaI CTAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 2 cut(s) 284, 348
BlsI GCNGC 2 cut(s) 285, 349
Bme1390I CCNGG 2 cut(s) 614, 785
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 273, 345
BmiI GGNNCC 2 cut(s) 275, 346
BmrFI CCNGG 2 cut(s) 614, 785
BpmI CTGGAG 2 cut(s) 71, 650
BpuMI CCSGG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 4 cut(s) 409, 439, 731, 761
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 43, 175, 667
Bse21I CCTNAGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 309
BseBI CCWGG 1 cut(s) 785
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 2 cut(s) 164, 265
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 236, 765
BseNI ACTGG 3 cut(s) 43, 175, 667
BseRI GAGGAG 3 cut(s) 68, 221, 739
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 222, 347
BshVI ATCGAT 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 2 cut(s) 310, 614
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 2 cut(s) 222, 347
BsoBI CYCGRG 1 cut(s) 69
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 5 cut(s) 27, 262, 452, 579, 625
BspACI CCGC 4 cut(s) 141, 348, 448, 450
BspANI GGCC 2 cut(s) 222, 347
BspCNI CTCAG 2 cut(s) 237, 764
BspDI ATCGAT 1 cut(s) 496
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 275, 346
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 460
BsrBI CCGCTC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 3 cut(s) 43, 175, 667
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 5 cut(s) 27, 262, 452, 579, 625
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 131
BstDEI CTNAG 4 cut(s) 245, 460, 751, 794
BstDSI CCRYGG 1 cut(s) 448
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 2 cut(s) 164, 265
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 5 cut(s) 30, 265, 455, 582, 628
BstMBI GATC 5 cut(s) 27, 262, 452, 579, 625
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstNI CCWGG 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 2 cut(s) 612, 783
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 496
Bsu36I CCTNAGG 1 cut(s) 794
BsuRI GGCC 2 cut(s) 222, 347
BsuTUI ATCGAT 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 2 cut(s) 164, 265
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 3 cut(s) 168, 582, 687
BveI ACCTGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 273, 345
Cfr42I CCGCGG 1 cut(s) 451
ClaI ATCGAT 1 cut(s) 496
CviAII CATG 1 cut(s) 189
DdeI CTNAG 4 cut(s) 245, 460, 751, 794
DpnI GATC 5 cut(s) 29, 264, 454, 581, 627
DpnII GATC 5 cut(s) 27, 262, 452, 579, 625
EaeI YGGCCR 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 299, 614
Eco81I CCTNAGG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 273
EcoO65I GGTNACC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 783
FaeI CATG 1 cut(s) 192
FaiI YATR 9 cut(s) 123, 190, 198, 501, 518, 703, 705, 710, 774
FatI CATG 1 cut(s) 188
FauI CCCGC 1 cut(s) 455
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 284, 348
FokI GGATG 2 cut(s) 151, 272
Fsp4HI GCNGC 2 cut(s) 284, 348
FspBI CTAG 1 cut(s) 392
GluI GCNGC 2 cut(s) 284, 348
GsuI CTGGAG 2 cut(s) 71, 650
HaeIII GGCC 2 cut(s) 222, 347
HapII CCGG 2 cut(s) 310, 614
Hin1II CATG 1 cut(s) 192
HinfI GANTC 7 cut(s) 58, 81, 161, 493, 527, 724, 746
HpaII CCGG 2 cut(s) 310, 614
HphI GGTGA 4 cut(s) 185, 224, 421, 671
Hpy166II GTNNAC 1 cut(s) 662
Hpy188I TCNGA 5 cut(s) 80, 86, 246, 254, 754
Hpy188III TCNNGA 4 cut(s) 50, 310, 335, 559
Hpy8I GTNNAC 1 cut(s) 662
HpyAV CCTTC 2 cut(s) 335, 598
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 2 cut(s) 18, 537
HpyCH4V TGCA 3 cut(s) 95, 125, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 4 cut(s) 245, 460, 751, 794
HpySE526I ACGT 2 cut(s) 18, 537
Hsp92II CATG 1 cut(s) 192
Kpn2I TCCGGA 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 262
KspI CCGCGG 1 cut(s) 451
Kzo9I GATC 5 cut(s) 27, 262, 452, 579, 625
Lsp1109I GCAGC 1 cut(s) 270
MaeI CTAG 1 cut(s) 392
MaeII ACGT 2 cut(s) 18, 537
MaeIII GTNAC 6 cut(s) 21, 34, 212, 546, 669, 787
MalI GATC 5 cut(s) 29, 264, 454, 581, 627
MbiI CCGCTC 1 cut(s) 350
MboI GATC 5 cut(s) 27, 262, 452, 579, 625
MboII GAAGA 2 cut(s) 350, 392
MflI RGATCY 1 cut(s) 452
MluCI AATT 2 cut(s) 302, 630
MlyI GAGTC 2 cut(s) 67, 740
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 7 cut(s) 46, 119, 199, 202, 264, 648, 760
MroI TCCGGA 1 cut(s) 309
MseI TTAA 3 cut(s) 534, 633, 738
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 2 cut(s) 310, 614
MspR9I CCNGG 2 cut(s) 614, 785
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NciI CCSGG 1 cut(s) 614
NdeII GATC 5 cut(s) 27, 262, 452, 579, 625
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 275, 346
NmuCI GTSAC 2 cut(s) 34, 212
NspI RCATGY 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 2 cut(s) 76, 493
PfeI GAWTC 5 cut(s) 81, 161, 493, 527, 724
PkrI GCNGC 2 cut(s) 285, 349
PleI GAGTC 2 cut(s) 66, 740
PpsI GAGTC 2 cut(s) 66, 740
PpuMI RGGWCCY 1 cut(s) 273
PsiI TTATAA 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 783
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 2 cut(s) 275, 346
PspPI GGNCC 2 cut(s) 273, 345
PspPPI RGGWCCY 1 cut(s) 273
PspXI VCTCGAGB 1 cut(s) 69
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 1 cut(s) 452
SacII CCGCGG 1 cut(s) 451
SaqAI TTAA 3 cut(s) 534, 633, 738
SatI GCNGC 2 cut(s) 284, 348
Sau3AI GATC 5 cut(s) 27, 262, 452, 579, 625
Sau96I GGNCC 2 cut(s) 273, 345
SchI GAGTC 2 cut(s) 67, 740
ScrFI CCNGG 2 cut(s) 614, 785
SetI ASST 8 cut(s) 21, 130, 285, 393, 508, 540, 640, 649
Sfr274I CTCGAG 1 cut(s) 69
Sfr303I CCGCGG 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 451
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 302, 630
SsiI CCGC 4 cut(s) 141, 348, 448, 450
SspI AATATT 2 cut(s) 694, 762
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 2 cut(s) 612, 783
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 2 cut(s) 21, 540
TaqI TCGA 3 cut(s) 30, 70, 496
TasI AATT 2 cut(s) 302, 630
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 5 cut(s) 81, 161, 493, 527, 724
Tru1I TTAA 3 cut(s) 534, 633, 738
Tru9I TTAA 3 cut(s) 534, 633, 738
TscAI CASTG 3 cut(s) 175, 589, 687
TseFI GTSAC 2 cut(s) 34, 212
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 2 cut(s) 34, 212
TspDTI ATGAA 3 cut(s) 20, 153, 725
TspRI CASTG 3 cut(s) 175, 589, 687
VpaK11BI GGWCC 1 cut(s) 273
XceI RCATGY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 69
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.