Rw5G013070

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000620
Physical Location & Seq
Forward (+)
15390543 .. 15391181
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013070.1

Sequence Viewer

Length: 639 bp
ATGGGTTTTGTTTTAGATTCATCCACTGATGAGTGTAAAGTGGCATGTTTTTATAAGAATGAGGAGGGTGACTTTGGCCGTGAAGTAGGCGTAAAAGTTCCAAGTATCGGAAAGGATGATCAATGGAGGACCCTGAAGCTGCCCAACCAAAATGACAAATTGTTCCGGAAAAGATATTTTAGAGCAACTCACGAAGAAGGGGCCGCTCATTTGGTGGAAATCATTAGAGATGGAGAAGATTTGAAGCTAGAAGTTCAATCTTTTGATTTGTGGAGTGAATGTTTCACCATTACCACTCTGCCCCGCGGATCTTTCTTAGACTTGAAAAGAGTTAGAGTTTTTCGTTGGAATCAATATGTTGCTGTTGGTGATATAGTAGGGAAAGCCCTTAACGTCTTGGTGTTACAAGACTTCAAGAAGCACCAATGGAGTAAGATCACTGTTCCCCTGAAGTTTTTGAAGGACGACCCGGTTTTGAAAGATCAAATTAAACCTCGTAGAGCTAATACGTTTGGTGAACTCCAGTTACACAATGCAGTGAGAAATAATCTTCTTTTATATGATATGAAACGGGAGATGATTCAAGCCACCATTAACATTACAAACTCCTCAGAAAAAATATTAATTCACTTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

212

Amino Acids

24.66

Weight (kDa)

8.9

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 8 - 195 2.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AccBSI CCGCTC 1 cut(s) 206
AccII CGCG 1 cut(s) 306
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 3 cut(s) 204, 304, 306
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 155, 470
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 7 cut(s) 244, 257, 325, 415, 460, 478, 584
AluBI AGCT 3 cut(s) 139, 247, 503
AluI AGCT 3 cut(s) 139, 247, 503
AlwI GGATC 1 cut(s) 316
Aor13HI TCCGGA 1 cut(s) 165
AoxI GGCC 2 cut(s) 76, 201
ApeKI GCWGC 1 cut(s) 139
AseI ATTAAT 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 129, 201
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 4 cut(s) 80, 277, 380, 527
AvaII GGWCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 63
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 470
BfaI CTAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 140, 204
BlsI GCNGC 2 cut(s) 141, 205
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 129, 201
BmiI GGNNCC 2 cut(s) 131, 202
BmrFI CCNGG 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 304
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 523
BseAI TCCGGA 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 20, 121
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 77, 598
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 2 cut(s) 78, 203
BsiSI CCGG 2 cut(s) 166, 470
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 2 cut(s) 78, 203
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 118, 308, 435, 481
BspACI CCGC 3 cut(s) 204, 304, 306
BspANI GGCC 2 cut(s) 78, 203
BspCNI CTCAG 1 cut(s) 623
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 131, 202
BspPI GGATC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 523
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 4 cut(s) 118, 308, 435, 481
Bst4CI ACNGT 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 316, 610
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 20, 121
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 4 cut(s) 121, 311, 438, 484
BstMBI GATC 4 cut(s) 118, 308, 435, 481
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 468
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 2 cut(s) 78, 203
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 20, 121
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 24, 438, 543
Cfr13I GGNCC 2 cut(s) 129, 201
Cfr42I CCGCGG 1 cut(s) 307
CviAII CATG 1 cut(s) 45
CviJI RGCY 7 cut(s) 78, 139, 203, 247, 386, 503, 587
CviKI_1 RGCY 7 cut(s) 78, 139, 203, 247, 386, 503, 587
DdeI CTNAG 2 cut(s) 316, 610
DpnI GATC 4 cut(s) 120, 310, 437, 483
DpnII GATC 4 cut(s) 118, 308, 435, 481
EaeI YGGCCR 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 155, 470
EcoO109I RGGNCCY 1 cut(s) 129
FaeI CATG 1 cut(s) 48
FaiI YATR 8 cut(s) 46, 54, 357, 374, 559, 561, 566, 637
FatI CATG 1 cut(s) 44
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 140, 204
FokI GGATG 2 cut(s) 7, 128
Fsp4HI GCNGC 2 cut(s) 140, 204
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 140, 204
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 2 cut(s) 78, 203
HapII CCGG 2 cut(s) 166, 470
Hin1II CATG 1 cut(s) 48
HinfI GANTC 3 cut(s) 17, 349, 580
HpaII CCGG 2 cut(s) 166, 470
HphI GGTGA 4 cut(s) 80, 277, 380, 527
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 2 cut(s) 110, 613
Hpy188III TCNNGA 3 cut(s) 166, 191, 415
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 2 cut(s) 191, 454
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 2 cut(s) 393, 509
HpyCH4V TGCA 1 cut(s) 536
HpyF3I CTNAG 2 cut(s) 316, 610
HpySE526I ACGT 2 cut(s) 393, 509
Hsp92II CATG 1 cut(s) 48
Kpn2I TCCGGA 1 cut(s) 165
Ksp22I TGATCA 1 cut(s) 118
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 4 cut(s) 118, 308, 435, 481
LpnPI CCDG 5 cut(s) 146, 179, 461, 483, 536
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 1 cut(s) 248
MaeII ACGT 2 cut(s) 393, 509
MaeIII GTNAC 3 cut(s) 68, 402, 525
MalI GATC 4 cut(s) 120, 310, 437, 483
MbiI CCGCTC 1 cut(s) 206
MboI GATC 4 cut(s) 118, 308, 435, 481
MboII GAAGA 3 cut(s) 206, 248, 542
MflI RGATCY 1 cut(s) 308
MluCI AATT 3 cut(s) 158, 486, 624
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 5 cut(s) 55, 58, 120, 504, 619
MroI TCCGGA 1 cut(s) 165
MseI TTAA 4 cut(s) 390, 489, 594, 623
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 166, 470
MspR9I CCNGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 306
NciI CCSGG 1 cut(s) 470
NdeII GATC 4 cut(s) 118, 308, 435, 481
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 131, 202
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 48
PfeI GAWTC 3 cut(s) 17, 349, 580
PkrI GCNGC 2 cut(s) 141, 205
PpuMI RGGWCCY 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 623
PsiI TTATAA 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 131, 202
PspPI GGNCC 2 cut(s) 129, 201
PspPPI RGGWCCY 1 cut(s) 129
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PsuI RGATCY 1 cut(s) 308
SacII CCGCGG 1 cut(s) 307
SaqAI TTAA 4 cut(s) 390, 489, 594, 623
SatI GCNGC 2 cut(s) 140, 204
Sau3AI GATC 4 cut(s) 118, 308, 435, 481
Sau96I GGNCC 2 cut(s) 129, 201
ScrFI CCNGG 1 cut(s) 470
SetI ASST 6 cut(s) 141, 249, 396, 496, 505, 512
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SinI GGWCC 1 cut(s) 129
Sse9I AATT 3 cut(s) 158, 486, 624
SsiI CCGC 3 cut(s) 204, 304, 306
SspI AATATT 1 cut(s) 621
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 2 cut(s) 396, 512
TasI AATT 3 cut(s) 158, 486, 624
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 3 cut(s) 17, 349, 580
Tru1I TTAA 4 cut(s) 390, 489, 594, 623
Tru9I TTAA 4 cut(s) 390, 489, 594, 623
TscAI CASTG 3 cut(s) 31, 445, 543
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 9, 581
TspRI CASTG 3 cut(s) 31, 445, 543
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 1 cut(s) 623
XceI RCATGY 1 cut(s) 48
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.