FvH4_4g13750

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000620
Physical Location & Seq
Reverse (-)
17269833 .. 17270615
783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13750.t1

Sequence Viewer

Length: 642 bp
ATGATGCTTACTAAGCGTCACGGAAGATTCTTCGACATTGTTTTCCAAATGTTATTGAAGATAATTCATGACACTTTTGAAACGTCATTAAAAAGTTTAGGGTTTAAGGAGGGTGAGTTTGGCCACTGGAACAAGGAGGGTGAGTTTGGCCATGAAGTAGGATTTAAAGTTCTAAGTATTGGAAAGGATGATGAATGGAGGACCCTGAAGCTGCCCAACAAAAATCAAGAATGGGTGCTGAAAAGAAGTAATATCATAGCAGTTCCAGATGAATCGGTAGCTCATTCGATGCAAATTATTAGAGTCGGAGAAGAGTTGAAGGTAAAAGTTGTATCATTTGATATATGGAGAGAAGCCCTTAACGTCTTGGTGTTACAAGACTTGAAGGAGCAGAAATGGAGTAAGATCACTGTTCCCTTGAAGTTTTTGAAGGACGACCCGATTTTGAAAGATCAAATTCAACCTGTTTTAGCTACCACGTTTGATGAACTCCAGTTAAACAATGCAGTGAGAAATGTTGTTCTTGTATATGATATGAAACAGGAGATAGTTAAGGCCACATATACAAAGTCCACAGAGCAAAGAATAGCCTTCGTCAAGCCAAGCCTTGTTACTCTCAAGGGAATGGAGAAGGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

214

Amino Acids

24.76

Weight (kDa)

7.87

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 121, 148
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 227
AgsI TTSAA 8 cut(s) 58, 80, 319, 385, 421, 430, 448, 461
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AluBI AGCT 3 cut(s) 211, 281, 473
AluI AGCT 3 cut(s) 211, 281, 473
AoxI GGCC 3 cut(s) 121, 148, 555
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 125, 152
AvaII GGWCC 1 cut(s) 201
BalI TGGCCA 2 cut(s) 123, 150
BbvI GCAGC 1 cut(s) 198
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 602
BsaXI ACNNNNNCTCC 4 cut(s) 101, 128, 131, 158
Bse1I ACTGG 2 cut(s) 131, 493
BseGI GGATG 1 cut(s) 193
BseNI ACTGG 2 cut(s) 131, 493
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 3 cut(s) 123, 150, 557
BsnI GGCC 3 cut(s) 123, 150, 557
Bsp143I GATC 2 cut(s) 405, 451
BspANI GGCC 3 cut(s) 123, 150, 557
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 131, 493
BssMI GATC 2 cut(s) 405, 451
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 12, 173
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 408, 454
BstMBI GATC 2 cut(s) 405, 451
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 123, 150, 557
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 124, 408, 513
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 5
CviAII CATG 2 cut(s) 68, 152
DdeI CTNAG 2 cut(s) 12, 173
DpnI GATC 2 cut(s) 407, 453
DpnII GATC 2 cut(s) 405, 451
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 121, 148
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 201
FaeI CATG 2 cut(s) 71, 155
FatI CATG 2 cut(s) 67, 151
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 3 cut(s) 123, 150, 557
HgaI GACGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 71, 155
HinfI GANTC 3 cut(s) 27, 272, 303
HphI GGTGA 2 cut(s) 125, 152
Hpy166II GTNNAC 1 cut(s) 573
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 3 cut(s) 68, 227, 266
Hpy8I GTNNAC 1 cut(s) 573
HpyAV CCTTC 5 cut(s) 313, 379, 424, 601, 625
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 3 cut(s) 83, 363, 479
HpyCH4V TGCA 2 cut(s) 292, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 12, 173
HpySE526I ACGT 3 cut(s) 83, 363, 479
Hsp92II CATG 2 cut(s) 71, 155
Kzo9I GATC 2 cut(s) 405, 451
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 6 cut(s) 112, 218, 279, 477, 506, 527
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 279
MaeII ACGT 3 cut(s) 83, 363, 479
MaeIII GTNAC 3 cut(s) 17, 372, 610
MalI GATC 2 cut(s) 407, 453
MboI GATC 2 cut(s) 405, 451
MboII GAAGA 4 cut(s) 22, 36, 70, 323
MlsI TGGCCA 2 cut(s) 123, 150
MluCI AATT 3 cut(s) 63, 294, 456
MluNI TGGCCA 2 cut(s) 123, 150
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 3 cut(s) 103, 130, 192
Mox20I TGGCCA 2 cut(s) 123, 150
MscI TGGCCA 2 cut(s) 123, 150
MseI TTAA 6 cut(s) 89, 105, 165, 360, 497, 552
Msp20I TGGCCA 2 cut(s) 123, 150
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 2 cut(s) 405, 451
NlaIII CATG 2 cut(s) 71, 155
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 17
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 2 cut(s) 27, 272
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 201
PspPPI RGGWCCY 1 cut(s) 201
SaqAI TTAA 6 cut(s) 89, 105, 165, 360, 497, 552
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 2 cut(s) 405, 451
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 312
SetI ASST 8 cut(s) 86, 213, 283, 324, 366, 466, 475, 482
SfaNI GCATC 1 cut(s) 279
SinI GGWCC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 3 cut(s) 63, 294, 456
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 3 cut(s) 86, 366, 482
TaqI TCGA 2 cut(s) 33, 287
TasI AATT 3 cut(s) 63, 294, 456
TfiI GAWTC 2 cut(s) 27, 272
Tru1I TTAA 6 cut(s) 89, 105, 165, 360, 497, 552
Tru9I TTAA 6 cut(s) 89, 105, 165, 360, 497, 552
TscAI CASTG 3 cut(s) 131, 415, 513
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 6 cut(s) 56, 168, 207, 285, 501, 551
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 131, 415, 513
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.