Rh3DG244100

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000620
Physical Location & Seq
Forward (+)
23833358 .. 23833681
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG244100.1

Sequence Viewer

Length: 324 bp
ATGGATCGAAGCCGTCCAACCGATCAGTTTTATCGTACCGCTGATGAAAAGTTCAAGTTTATTTCAACTTATGGAGGCTTGTGTTTGGAGAGAAGTCTTAGTAATTCTAGGGTTTTTCGTATCAGAAACCCTGCAGCCCAACAAGTGCTATACTTGCCTGATGGACCTGAGTATACTAACACCATGGATTTTGCTTTTAATTCTTCTACTCGCGAGTGTAAAGTGGTATGCTGTTGTTGGGAGAAGAACGAAGTTCACAGTACTGAAGCAAGTTTGAAAATTATAACTGTTGGAAAAGATGAGCAATGGCATGGAGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

107

Amino Acids

12.39

Weight (kDa)

6.1

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 37, 262
AgsI TTSAA 3 cut(s) 55, 66, 277
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 164
AvaII GGWCC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 155
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmcAI AGTACT 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 213
Bsp143I GATC 2 cut(s) 4, 22
Bsp19I CCATGG 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 4, 22
BssNAI GTATAC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 260, 289
BstDEI CTNAG 2 cut(s) 98, 168
BstDSI CCRYGG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 2 cut(s) 7, 25
BstMBI GATC 2 cut(s) 4, 22
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 146
BstZ17I GTATAC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 183
BtuMI TCGCGA 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 36, 261
CviAII CATG 2 cut(s) 184, 311
CviJI RGCY 3 cut(s) 12, 78, 137
CviKI_1 RGCY 3 cut(s) 12, 78, 137
CviQI GTAC 2 cut(s) 36, 261
DdeI CTNAG 2 cut(s) 98, 168
DpnI GATC 2 cut(s) 6, 24
DpnII GATC 2 cut(s) 4, 22
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 187, 314
FaiI YATR 7 cut(s) 72, 151, 174, 185, 229, 284, 312
FatI CATG 2 cut(s) 183, 310
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 187, 314
Hpy166II GTNNAC 2 cut(s) 174, 256
Hpy188I TCNGA 2 cut(s) 125, 323
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 174, 256
HpyCH4III ACNGT 2 cut(s) 260, 289
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 98, 168
Hsp92II CATG 2 cut(s) 187, 314
Kzo9I GATC 2 cut(s) 4, 22
LpnPI CCDG 3 cut(s) 144, 171, 180
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 6, 24
MboI GATC 2 cut(s) 4, 22
MboII GAAGA 2 cut(s) 195, 256
MluCI AATT 3 cut(s) 103, 199, 279
MmeI TCCRAC 2 cut(s) 41, 271
MnlI CCTC 1 cut(s) 68
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 41
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 154
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 4, 22
NlaIII CATG 2 cut(s) 187, 314
NruI TCGCGA 1 cut(s) 213
PkrI GCNGC 1 cut(s) 136
PsiI TTATAA 1 cut(s) 284
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 136
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 2 cut(s) 37, 262
RsaNI GTAC 2 cut(s) 36, 261
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 4, 22
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 262
SetI ASST 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 164
Sse9I AATT 3 cut(s) 103, 199, 279
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 260, 289
TaqI TCGA 1 cut(s) 7
TasI AATT 3 cut(s) 103, 199, 279
TatI WGTACW 1 cut(s) 260
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.