Rh3AG219300

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000620
Physical Location & Seq
Forward (+)
22415951 .. 22420590
4640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG219300.1

Sequence Viewer

Length: 549 bp
ATGGATCGAAGCCGTCCAACCGATCAGTTTTATCGTACCGCTGATGAAAAGTTCAAGTTTATTTCAACTTATGGAGGCTTGTGTTTGGAGAGAAGTCTTAGTAATTCTAGGGTTTTTCGTATCAGAAACCCTGCAGCCCAACAAGTGCTATACTTGCCTGATGGACCTGAGTATACTAACACCATGGATTTTGCTTTTAATTCATCTACTCGCGAGTGTAAAGTGGTATGCTGTTGTTGGGAGAACAACGAAGTTGACAGTACTGAAGCAAGTTTGAAAATTATAACTGTTGGAAAAGATGAGCAATGGAGAACTCTGATCCTCCCAAACCAAAGTTTGATGAATGCGCGCGGCGAGTTCGTGTTAAAAGTGCACTTCAGTGGAGTACGTAAGGTTTGGCTATATAGGTTGAGATGGTTGTTTATTAATTCGAATCATACAGAAATGCCACACGTGGATGAGAAATTCAAGACTGAAGGAGATCAAATTCAGCTCATGTATCTACTGTCTCTGAGCAATCATTTGGATGAAGCGTCTTATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

182

Amino Acids

21.32

Weight (kDa)

6.9

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AccI GTMKAC 1 cut(s) 173
AccII CGCG 3 cut(s) 213, 349, 351
AciI CCGC 2 cut(s) 39, 351
AclWI GGATC 2 cut(s) 12, 313
AcsI RAATTY 2 cut(s) 464, 486
AcuI CTGAAG 3 cut(s) 285, 361, 495
AcvI CACGTG 1 cut(s) 454
AfaI GTAC 3 cut(s) 37, 262, 387
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 4 cut(s) 55, 66, 277, 469
AleI CACNNNNGTG 1 cut(s) 378
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 513
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 2 cut(s) 12, 313
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 2 cut(s) 464, 486
AseI ATTAAT 1 cut(s) 426
AspLEI GCGC 2 cut(s) 349, 351
AspS9I GGNCC 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 375
BbrPI CACGTG 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 155, 408
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 135, 352
BlsI GCNGC 2 cut(s) 136, 353
BmcAI AGTACT 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 527
BsaAI YACGTR 2 cut(s) 389, 454
BsaJI CCNNGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 463, 532
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 2 cut(s) 159, 503
BsePI GCGCGC 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 3 cut(s) 213, 349, 351
BsiHKAI GWGCWC 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 513
BsmI GAATGC 1 cut(s) 349
Bsp119I TTCGAA 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 4 cut(s) 4, 22, 318, 481
Bsp19I CCATGG 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 2 cut(s) 39, 351
BspCNI CTCAG 2 cut(s) 160, 504
BspFNI CGCG 3 cut(s) 213, 349, 351
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 2 cut(s) 12, 313
BspT104I TTCGAA 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 183
BssHII GCGCGC 1 cut(s) 347
BssMI GATC 4 cut(s) 4, 22, 318, 481
BssNAI GTATAC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 260, 289, 507
BstBAI YACGTR 2 cut(s) 389, 454
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 98, 168, 512
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 463, 532
BstFNI CGCG 3 cut(s) 213, 349, 351
BstHHI GCGC 2 cut(s) 349, 351
BstKTI GATC 4 cut(s) 7, 25, 321, 484
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 4 cut(s) 4, 22, 318, 481
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 375
BstSNI TACGTA 1 cut(s) 389
BstUI CGCG 3 cut(s) 213, 349, 351
BstV1I GCAGC 1 cut(s) 146
BstZ17I GTATAC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 2 cut(s) 463, 532
BtsIMutI CAGTG 1 cut(s) 385
BtuMI TCGCGA 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 2 cut(s) 349, 351
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 522
Csp6I GTAC 3 cut(s) 36, 261, 386
CviAII CATG 2 cut(s) 184, 496
CviJI RGCY 5 cut(s) 12, 78, 137, 400, 493
CviKI_1 RGCY 5 cut(s) 12, 78, 137, 400, 493
CviQI GTAC 3 cut(s) 36, 261, 386
DdeI CTNAG 3 cut(s) 98, 168, 512
DpnI GATC 4 cut(s) 6, 24, 320, 483
DpnII GATC 4 cut(s) 4, 22, 318, 481
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 3 cut(s) 285, 361, 495
Eco72I CACGTG 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 187, 499
FatI CATG 2 cut(s) 183, 495
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 135, 352
FokI GGATG 2 cut(s) 470, 539
Fsp4HI GCNGC 2 cut(s) 135, 352
FspBI CTAG 1 cut(s) 108
GlaI GCGC 2 cut(s) 348, 350
GluI GCNGC 2 cut(s) 135, 352
HgaI GACGC 1 cut(s) 522
HhaI GCGC 2 cut(s) 349, 351
Hin1II CATG 2 cut(s) 187, 499
Hin6I GCGC 2 cut(s) 347, 349
HinP1I GCGC 2 cut(s) 347, 349
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 433
Hpy166II GTNNAC 3 cut(s) 174, 256, 373
Hpy188I TCNGA 3 cut(s) 125, 318, 513
Hpy188III TCNNGA 2 cut(s) 212, 469
Hpy8I GTNNAC 3 cut(s) 174, 256, 373
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 3 cut(s) 260, 289, 507
HpyCH4IV ACGT 2 cut(s) 388, 453
HpyCH4V TGCA 2 cut(s) 134, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 3 cut(s) 98, 168, 512
HpySE526I ACGT 2 cut(s) 388, 453
Hsp92II CATG 2 cut(s) 187, 499
HspAI GCGC 2 cut(s) 347, 349
Kzo9I GATC 4 cut(s) 4, 22, 318, 481
LpnPI CCDG 3 cut(s) 144, 171, 180
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 388, 453
MalI GATC 4 cut(s) 6, 24, 320, 483
MboI GATC 4 cut(s) 4, 22, 318, 481
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 6 cut(s) 103, 199, 279, 427, 464, 486
MmeI TCCRAC 2 cut(s) 41, 271
MnlI CCTC 2 cut(s) 68, 332
MseI TTAA 3 cut(s) 198, 365, 426
MslI CAYNNNNRTG 3 cut(s) 378, 456, 525
MspA1I CMGCKG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 349
MvnI CGCG 3 cut(s) 213, 349, 351
MwoI GCNNNNNNNGC 1 cut(s) 154
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 4, 22, 318, 481
NlaIII CATG 2 cut(s) 187, 499
NruI TCGCGA 1 cut(s) 213
NspV TTCGAA 1 cut(s) 431
OliI CACNNNNGTG 1 cut(s) 378
PauI GCGCGC 1 cut(s) 347
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 433
PkrI GCNGC 2 cut(s) 136, 353
PmaCI CACGTG 1 cut(s) 454
PmlI CACGTG 1 cut(s) 454
Ppu21I YACGTR 2 cut(s) 389, 454
PshBI ATTAAT 1 cut(s) 426
PsiI TTATAA 1 cut(s) 284
PspCI CACGTG 1 cut(s) 454
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 136
PteI GCGCGC 1 cut(s) 347
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 3 cut(s) 37, 262, 387
RsaNI GTAC 3 cut(s) 36, 261, 386
RseI CAYNNNNRTG 3 cut(s) 378, 456, 525
SaqAI TTAA 3 cut(s) 198, 365, 426
SatI GCNGC 2 cut(s) 135, 352
Sau3AI GATC 4 cut(s) 4, 22, 318, 481
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 262
SduI GDGCHC 1 cut(s) 375
SetI ASST 6 cut(s) 169, 391, 396, 410, 456, 495
SfcI CTRYAG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 431
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 3 cut(s) 378, 456, 525
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SnaBI TACGTA 1 cut(s) 389
Sse9I AATT 6 cut(s) 103, 199, 279, 427, 464, 486
SsiI CCGC 2 cut(s) 39, 351
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 260, 289, 507
TaiI ACGT 2 cut(s) 391, 456
TaqI TCGA 2 cut(s) 7, 431
TasI AATT 6 cut(s) 103, 199, 279, 427, 464, 486
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 3 cut(s) 198, 365, 426
Tru9I TTAA 3 cut(s) 198, 365, 426
TscAI CASTG 1 cut(s) 385
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 4 cut(s) 60, 192, 356, 543
TspRI CASTG 1 cut(s) 385
VneI GTGCAC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 164
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 2 cut(s) 464, 486
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.