RchiOBHm_Chr5g0021181

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000620
Physical Location & Seq
Forward (+)
15479611 .. 15481343
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30124

Sequence Viewer

Length: 1098 bp
ATGCCATCGACAAGGGACTGCTGTGAGTTATCTGGTCACTCCCACAATCTAAATCTGAGAAAAAAACCGGCGGTATCTGATGCAGTGCGAGCGCTTCCTTTTGATATCATCACTGAGATTTTGAGCTGGTTGCCTGTAGATTCTTTGCTAAGGTTCAAGTGTGTGTGCAAAAAATGGCGTTCCTTGCTTCTAGACTACAATTTCATTGCAAAACATATGGTTCGGGCGAGACCTCTGCAACTTTCCTATAAAAAAGAATGGGACCCTTACAAATATGATACGGTTCTTTATGATGAAAACTTCAAACATATTTCAGATGTGGCTGGCTTGCTTCTGGAGGAGAGTCTTACTTCTCGAGTTTTCCGAATCAGAAACTTTGCAACGCATCAAGTACTTTACTTGCCTGATGCACACGGGAAATCTAGGTCAGTGGGTTTTGTTTTTGATTCATCCACTGGTGAGTGTAAAGCGGCATGTTTTCATTGGAAACAGGAGGGTGACTCTGGCTTTGAAGTAGCCTTTGAAGTTCTAAGTATCGGAAAGGATGATCGATGGAGGACTCTGAAGCTGCCCAAGCAAAATGGCGAACCGTACGTGGGACGATATTTTACAGCAGCTAAGGAAGAAGGGGCCGCTCATCTGGTGGAAATTATTAGAGATGGACAAGATTTCAAGCTAGAAGTTCAATCTCTTGATATATGGAGTGAACGTTTCACCATTGCCACTCTGCCCCGGGGAGCTTTCTTAGACTTGAAAAGAGTTACAATTTTTCTTTGGAATTACTATGTAGCTGTTGCTGATATAGTAGAGGAATCCCTTAACGTCTTGGTGTTGGAAGACTTCAAGGAACACAAATGGAGGAAGATCATTGTTCCCTTGAAATTCTTGAAGGACAATCCAGGTTTAAAAGATGAGATTTGCCCTCAAGGAATTTGGCTAAATGACCTCCAGTTGCACAATGGAATGAGAAAGTATATTCTCGTGTATGATATGGAAAGGAAGGTGATCAAGGCGACGCATACCAAGTCTGTGGAGAAAATATATGAATTCCGAAAGCCAAGCCTGGTTACTCTCAAGGGAATGAAGAATGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

365

Amino Acids

42.49

Weight (kDa)

8.75

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 31 - 65 6.7e-08 F-box-like
F-box PF00646 32 - 68 1.8e-10 F-box domain
FBA_3 PF08268 99 - 346 1.7e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 635
AciI CCGC 3 cut(s) 71, 470, 633
AclI AACGTT 1 cut(s) 709
AcsI RAATTY 3 cut(s) 881, 930, 1046
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 2 cut(s) 393, 593
AfeI AGCGCT 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 596
AjnI CCWGG 2 cut(s) 898, 1062
AluBI AGCT 6 cut(s) 126, 568, 617, 676, 740, 791
AluI AGCT 6 cut(s) 126, 568, 617, 676, 740, 791
Alw26I GTCTC 1 cut(s) 223
Ama87I CYCGRG 2 cut(s) 354, 732
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 2 cut(s) 568, 614
ApoI RAATTY 3 cut(s) 881, 930, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 262, 630
AsuC2I CCSGG 2 cut(s) 733, 734
AsuHPI GGTGA 4 cut(s) 470, 509, 706, 1015
AvaI CYCGRG 2 cut(s) 354, 732
AvaII GGWCC 1 cut(s) 262
BarI GAAGNNNNNNTAC 1 cut(s) 1076
BauI CACGAG 1 cut(s) 980
BbsI GAAGAC 1 cut(s) 843
BbvI GCAGC 2 cut(s) 555, 626
BccI CCATC 3 cut(s) 13, 546, 653
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 2 cut(s) 900, 1064
BclI TGATCA 1 cut(s) 1005
BcnI CCSGG 2 cut(s) 733, 734
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 4 cut(s) 191, 423, 677, 1096
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 95
BisI GCNGC 4 cut(s) 471, 569, 615, 633
BlsI GCNGC 4 cut(s) 472, 570, 616, 634
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 4 cut(s) 733, 734, 900, 1064
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 2 cut(s) 354, 732
BmgT120I GGNCC 2 cut(s) 262, 630
BmiI GGNNCC 3 cut(s) 263, 264, 631
BmrFI CCNGG 4 cut(s) 733, 734, 900, 1064
BmsI GCATC 3 cut(s) 70, 394, 397
BpiI GAAGAC 1 cut(s) 843
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 2 cut(s) 356, 932
Bpu10I CCTNAGC 2 cut(s) 149, 618
BpuEI CTTGAG 2 cut(s) 909, 1058
BpuMI CCSGG 2 cut(s) 733, 734
Bsa29I ATCGAT 1 cut(s) 550
BsaAI YACGTR 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 3 cut(s) 731, 732, 733
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 460, 949
Bse3DI GCAATG 2 cut(s) 204, 717
BseBI CCWGG 2 cut(s) 900, 1064
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 3 cut(s) 731, 732, 733
BseGI GGATG 2 cut(s) 449, 550
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 2 cut(s) 204, 717
BseMII CTCAG 2 cut(s) 47, 105
BseNI ACTGG 2 cut(s) 460, 949
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 2 cut(s) 555, 626
BshFI GGCC 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 550
BsiHKCI CYCGRG 2 cut(s) 354, 732
BsiSI CCGG 2 cut(s) 68, 733
BsiWI CGTACG 1 cut(s) 591
BslFI GGGAC 3 cut(s) 29, 275, 612
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 3 cut(s) 29, 275, 612
BsnI GGCC 1 cut(s) 632
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 2 cut(s) 354, 732
Bsp143I GATC 3 cut(s) 547, 864, 1005
BspACI CCGC 3 cut(s) 71, 470, 633
BspANI GGCC 1 cut(s) 632
BspCNI CTCAG 2 cut(s) 48, 106
BspDI ATCGAT 1 cut(s) 550
BspLI GGNNCC 3 cut(s) 263, 264, 631
BspTNI GGTCTC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 635
BsrDI GCAATG 2 cut(s) 204, 717
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 460, 949
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 731, 732, 733
BssMI GATC 3 cut(s) 547, 864, 1005
BssSI CACGAG 1 cut(s) 980
Bst2BI CACGAG 1 cut(s) 980
Bst2UI CCWGG 2 cut(s) 900, 1064
Bst4CI ACNGT 2 cut(s) 283, 591
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 3 cut(s) 90, 325, 329
BstDEI CTNAG 6 cut(s) 56, 114, 149, 530, 618, 745
BstF5I GGATG 2 cut(s) 449, 550
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 3 cut(s) 550, 867, 1008
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 547, 864, 1005
BstMWI GCNNNNNNNGC 3 cut(s) 89, 184, 574
BstNI CCWGG 2 cut(s) 900, 1064
BstNSI RCATGY 1 cut(s) 477
BstSCI CCNGG 4 cut(s) 731, 732, 898, 1062
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 555, 626
BstV2I GAAGAC 1 cut(s) 843
BstXI CCANNNNNNTGG 1 cut(s) 1030
Bsu15I ATCGAT 1 cut(s) 550
BsuRI GGCC 1 cut(s) 632
BsuTUI ATCGAT 1 cut(s) 550
BtsCI GGATG 2 cut(s) 449, 550
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 4 cut(s) 90, 111, 435, 453
Cac8I GCNNGC 3 cut(s) 90, 325, 329
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 262, 630
Cfr9I CCCGGG 1 cut(s) 732
ClaI ATCGAT 1 cut(s) 550
CseI GACGC 1 cut(s) 1024
Csp6I GTAC 2 cut(s) 392, 592
CviAII CATG 1 cut(s) 474
CviQI GTAC 2 cut(s) 392, 592
DdeI CTNAG 6 cut(s) 56, 114, 149, 530, 618, 745
DpnI GATC 3 cut(s) 549, 866, 1007
DpnII GATC 3 cut(s) 547, 864, 1005
DraI TTTAAA 1 cut(s) 906
Eco31I GGTCTC 1 cut(s) 223
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 262
Eco47III AGCGCT 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 2 cut(s) 354, 732
EcoO109I RGGNCCY 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 1046
EcoRII CCWGG 2 cut(s) 898, 1062
EcoRV GATATC 1 cut(s) 106
FaeI CATG 1 cut(s) 477
FaqI GGGAC 3 cut(s) 29, 275, 612
FatI CATG 1 cut(s) 473
FauNDI CATATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 1005
Fnu4HI GCNGC 4 cut(s) 471, 569, 615, 633
FokI GGATG 2 cut(s) 436, 557
Fsp4HI GCNGC 4 cut(s) 471, 569, 615, 633
FspBI CTAG 4 cut(s) 191, 423, 677, 1096
GlaI GCGC 1 cut(s) 93
GluI GCNGC 4 cut(s) 471, 569, 615, 633
GsuI CTGGAG 2 cut(s) 356, 932
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 632
HapII CCGG 2 cut(s) 68, 733
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 477
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 7 cut(s) 140, 343, 366, 446, 500, 559, 812
HpaII CCGG 2 cut(s) 68, 733
HphI GGTGA 4 cut(s) 470, 509, 706, 1015
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 8 cut(s) 57, 79, 316, 365, 371, 539, 564, 1052
Hpy188III TCNNGA 5 cut(s) 191, 335, 354, 692, 886
Hpy8I GTNNAC 1 cut(s) 707
Hpy99I CGWCG 1 cut(s) 1018
HpyAV CCTTC 3 cut(s) 620, 883, 994
HpyCH4III ACNGT 2 cut(s) 283, 591
HpyCH4IV ACGT 3 cut(s) 594, 709, 822
HpyCH4V TGCA 7 cut(s) 83, 168, 209, 238, 380, 410, 955
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 184, 574
HpyF3I CTNAG 6 cut(s) 56, 114, 149, 530, 618, 745
HpySE526I ACGT 3 cut(s) 594, 709, 822
Hsp92II CATG 1 cut(s) 477
HspAI GCGC 1 cut(s) 92
KflI GGGWCCC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 1005
Kzo9I GATC 3 cut(s) 547, 864, 1005
LmnI GCTCC 1 cut(s) 737
Lsp1109I GCAGC 2 cut(s) 555, 626
LweI GCATC 3 cut(s) 70, 394, 397
MaeI CTAG 4 cut(s) 191, 423, 677, 1096
MaeII ACGT 3 cut(s) 594, 709, 822
MaeIII GTNAC 4 cut(s) 35, 497, 760, 1066
MalI GATC 3 cut(s) 549, 866, 1007
MbiI CCGCTC 1 cut(s) 635
MboI GATC 3 cut(s) 547, 864, 1005
MboII GAAGA 4 cut(s) 635, 848, 874, 1096
MluCI AATT 7 cut(s) 199, 648, 765, 778, 881, 930, 1046
MlyI GAGTC 3 cut(s) 352, 494, 553
MmeI TCCRAC 1 cut(s) 813
MnlI CCTC 8 cut(s) 243, 331, 487, 549, 802, 852, 933, 956
MseI TTAA 2 cut(s) 819, 905
MspI CCGG 2 cut(s) 68, 733
MspR9I CCNGG 4 cut(s) 733, 734, 900, 1064
MvaI CCWGG 2 cut(s) 900, 1064
MwoI GCNNNNNNNGC 3 cut(s) 89, 184, 574
NciI CCSGG 2 cut(s) 733, 734
NdeI CATATG 1 cut(s) 216
NdeII GATC 3 cut(s) 547, 864, 1005
NlaIII CATG 1 cut(s) 477
NlaIV GGNNCC 3 cut(s) 263, 264, 631
NmuCI GTSAC 2 cut(s) 35, 497
NspI RCATGY 1 cut(s) 477
PaeR7I CTCGAG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 361
PfeI GAWTC 4 cut(s) 140, 366, 446, 812
Pfl23II CGTACG 1 cut(s) 591
PkrI GCNGC 4 cut(s) 472, 570, 616, 634
PleI GAGTC 3 cut(s) 351, 494, 553
PpsI GAGTC 3 cut(s) 351, 494, 553
Ppu21I YACGTR 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 262
Psp1406I AACGTT 1 cut(s) 709
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 898, 1062
PspGI CCWGG 2 cut(s) 898, 1062
PspLI CGTACG 1 cut(s) 591
PspN4I GGNNCC 3 cut(s) 263, 264, 631
PspPI GGNCC 2 cut(s) 262, 630
PspPPI RGGWCCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 393, 593
RsaNI GTAC 2 cut(s) 392, 592
SaqAI TTAA 2 cut(s) 819, 905
SatI GCNGC 4 cut(s) 471, 569, 615, 633
Sau3AI GATC 3 cut(s) 547, 864, 1005
Sau96I GGNCC 2 cut(s) 262, 630
ScaI AGTACT 1 cut(s) 393
SchI GAGTC 3 cut(s) 352, 494, 553
ScrFI CCNGG 4 cut(s) 733, 734, 900, 1064
SfaNI GCATC 3 cut(s) 70, 394, 397
SfcI CTRYAG 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 354
SmaI CCCGGG 1 cut(s) 734
SmlI CTYRAG 3 cut(s) 354, 924, 1073
SmoI CTYRAG 3 cut(s) 354, 924, 1073
Sse9I AATT 7 cut(s) 199, 648, 765, 778, 881, 930, 1046
SsiI CCGC 3 cut(s) 71, 470, 633
SspMI CTAG 4 cut(s) 191, 423, 677, 1096
StyD4I CCNGG 4 cut(s) 731, 732, 898, 1062
TaaI ACNGT 2 cut(s) 283, 591
TaiI ACGT 3 cut(s) 597, 712, 825
TaqI TCGA 3 cut(s) 8, 355, 550
TasI AATT 7 cut(s) 199, 648, 765, 778, 881, 930, 1046
TatI WGTACW 1 cut(s) 391
TauI GCSGC 2 cut(s) 473, 635
TfiI GAWTC 4 cut(s) 140, 366, 446, 812
Tru1I TTAA 2 cut(s) 819, 905
Tru9I TTAA 2 cut(s) 819, 905
TscAI CASTG 4 cut(s) 90, 118, 435, 460
TseFI GTSAC 2 cut(s) 35, 497
TseI GCWGC 2 cut(s) 568, 614
Tsp45I GTSAC 2 cut(s) 35, 497
TspDTI ATGAA 6 cut(s) 193, 309, 438, 470, 1059, 1097
TspMI CCCGGG 1 cut(s) 732
TspRI CASTG 4 cut(s) 90, 118, 435, 460
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 3 cut(s) 881, 930, 1046
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XhoI CTCGAG 1 cut(s) 354
XmaI CCCGGG 1 cut(s) 732
XspI CTAG 4 cut(s) 191, 423, 677, 1096
ZrmI AGTACT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.