RLG00000032592

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000620
Physical Location & Seq
Forward (+)
16864861 .. 16871152
6292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032592

Sequence Viewer

Length: 915 bp
ATGCCATCGACAAGGGACTGCTGTGAGTTATCTGGTCACTCCCACAATCTAAATCTGAGAAAAAAACCGGCGACTACAATTTCATTGCAAAACATATGGTTCGGGCGAGACCTCTGCAACTTTCCTATAAAAAAAGAATGGGACCCTTACAAATATGATACGGTTCTTTATGATGAAAACTTCATACATATTTCAGATGTGGCTGGCTTGCTTCTGGAGGAGAGTCTTACTTCTCGAGTTTTCCGAATCAGAAACTTTGCAACGCATCAAGTACTTGACTTGCCTGATGCACACGGGAAATCTAGGTCAGTGGGTTTTGTTTTTAATTCATCCACTGGTGAGTGTAAGGCGGCATGTTTTTATTGGAAACAGGAGGGTGACTCTGGCTTTGAAGTAGCCTTTGAAGTTCTAAGTATCGGAAAGGATGATCGATGGAGGACTCTGAAGCTGCCCAAGCAAAATGGCGAACCGTTCGTGGGACGATATTTTACAGCAGCTAAGGAAGAAGGGGCCGCTCATGAGGTGGAAATTATTAGAGATGGACAAGATTTCAAGCTAGAAGTTCAATCTCTTGATATATGGAGTGAACGTTTCACCATTGCCACTCTGCCCCGGGGAGCTTTCTTAGACTTGAAAAGAGTTACAATTTTTCTTTGGAATTACTATGTAGCTGTTGCTGATATAGTAGAGGAATACCTTAACGTCTTGGACAATCCACGTTTAAAAGATGAGATTTGCCCGAAAGGAGTTTGGCTAAATGACCTCCAGTTGCACAATGGAATGAGAAAGTATATTCTCGTGTATGATATGGAAAGGAAGGTGATCAAGGCGACGCATACCAAGTCTGTGGAGAAAATATATGAATTCCGAAAGCCAAGCCTGGTTACTCTCAAGGGAATGAAGAATGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

305

Amino Acids

35.25

Weight (kDa)

6.72

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 515
AciI CCGC 2 cut(s) 350, 513
AclI AACGTT 1 cut(s) 589
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 392, 404, 553, 566, 634
AjnI CCWGG 1 cut(s) 879
AluBI AGCT 5 cut(s) 448, 497, 556, 620, 671
AluI AGCT 5 cut(s) 448, 497, 556, 620, 671
Alw26I GTCTC 1 cut(s) 102
Ama87I CYCGRG 2 cut(s) 234, 612
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 2 cut(s) 448, 494
ApoI RAATTY 1 cut(s) 863
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspS9I GGNCC 2 cut(s) 142, 510
AsuC2I CCSGG 2 cut(s) 613, 614
AsuHPI GGTGA 4 cut(s) 350, 389, 586, 832
AvaI CYCGRG 2 cut(s) 234, 612
AvaII GGWCC 1 cut(s) 142
BarI GAAGNNNNNNTAC 1 cut(s) 893
BauI CACGAG 1 cut(s) 797
BbvI GCAGC 2 cut(s) 435, 506
BccI CCATC 3 cut(s) 13, 426, 533
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 881
BclI TGATCA 1 cut(s) 822
BcnI CCSGG 2 cut(s) 613, 614
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 303, 557, 913
BisI GCNGC 4 cut(s) 351, 449, 495, 513
BlsI GCNGC 4 cut(s) 352, 450, 496, 514
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 613, 614, 881
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 2 cut(s) 234, 612
BmgT120I GGNCC 2 cut(s) 142, 510
BmiI GGNNCC 3 cut(s) 143, 144, 511
BmrFI CCNGG 3 cut(s) 613, 614, 881
BmsI GCATC 2 cut(s) 274, 277
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 2 cut(s) 236, 749
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 2 cut(s) 613, 614
Bsa29I ATCGAT 1 cut(s) 430
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 611, 612, 613
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 340, 766
Bse3DI GCAATG 2 cut(s) 83, 597
BseBI CCWGG 1 cut(s) 881
BseCI ATCGAT 1 cut(s) 430
BseDI CCNNGG 3 cut(s) 611, 612, 613
BseGI GGATG 2 cut(s) 329, 430
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 2 cut(s) 83, 597
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 2 cut(s) 340, 766
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 435, 506
BshFI GGCC 1 cut(s) 512
BshVI ATCGAT 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 234, 612
BsiSI CCGG 2 cut(s) 68, 613
BslFI GGGAC 3 cut(s) 29, 155, 492
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 3 cut(s) 29, 155, 492
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 2 cut(s) 234, 612
Bsp143I GATC 2 cut(s) 427, 822
BspACI CCGC 2 cut(s) 350, 513
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 430
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 143, 144, 511
BspTNI GGTCTC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 83, 597
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 340, 766
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 611, 612, 613
BssMI GATC 2 cut(s) 427, 822
BssSI CACGAG 1 cut(s) 797
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 881
Bst4CI ACNGT 2 cut(s) 163, 471
BstC8I GCNNGC 2 cut(s) 205, 209
BstDEI CTNAG 4 cut(s) 56, 410, 498, 625
BstF5I GGATG 2 cut(s) 329, 430
BstKTI GATC 2 cut(s) 430, 825
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 2 cut(s) 427, 822
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 881
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 3 cut(s) 611, 612, 879
BstV1I GCAGC 2 cut(s) 435, 506
BstXI CCANNNNNNTGG 1 cut(s) 847
Bsu15I ATCGAT 1 cut(s) 430
BsuRI GGCC 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 430
BtsCI GGATG 2 cut(s) 329, 430
BtsIMutI CAGTG 2 cut(s) 315, 333
Cac8I GCNNGC 2 cut(s) 205, 209
CciI TCATGA 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 142, 510
Cfr9I CCCGGG 1 cut(s) 612
ClaI ATCGAT 1 cut(s) 430
CseI GACGC 1 cut(s) 841
Csp6I GTAC 1 cut(s) 272
CviAII CATG 2 cut(s) 354, 518
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 4 cut(s) 56, 410, 498, 625
DpnI GATC 2 cut(s) 429, 824
DpnII GATC 2 cut(s) 427, 822
DraI TTTAAA 1 cut(s) 723
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 464
Eco88I CYCGRG 2 cut(s) 234, 612
EcoO109I RGGNCCY 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 879
FaeI CATG 2 cut(s) 357, 521
FaqI GGGAC 3 cut(s) 29, 155, 492
FatI CATG 2 cut(s) 353, 517
FauNDI CATATG 1 cut(s) 95
FbaI TGATCA 1 cut(s) 822
Fnu4HI GCNGC 4 cut(s) 351, 449, 495, 513
FokI GGATG 2 cut(s) 316, 437
Fsp4HI GCNGC 4 cut(s) 351, 449, 495, 513
FspBI CTAG 3 cut(s) 303, 557, 913
GluI GCNGC 4 cut(s) 351, 449, 495, 513
GsuI CTGGAG 2 cut(s) 236, 749
HaeIII GGCC 1 cut(s) 512
HapII CCGG 2 cut(s) 68, 613
HgaI GACGC 1 cut(s) 841
Hin1II CATG 2 cut(s) 357, 521
HinfI GANTC 4 cut(s) 223, 246, 380, 439
HpaII CCGG 2 cut(s) 68, 613
HphI GGTGA 4 cut(s) 350, 389, 586, 832
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 7 cut(s) 57, 196, 245, 251, 419, 444, 869
Hpy188III TCNNGA 4 cut(s) 215, 234, 518, 572
Hpy8I GTNNAC 1 cut(s) 587
Hpy99I CGWCG 1 cut(s) 835
HpyAV CCTTC 2 cut(s) 500, 811
HpyCH4III ACNGT 2 cut(s) 163, 471
HpyCH4IV ACGT 3 cut(s) 589, 702, 718
HpyCH4V TGCA 5 cut(s) 88, 117, 260, 290, 772
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 4 cut(s) 56, 410, 498, 625
HpySE526I ACGT 3 cut(s) 589, 702, 718
Hsp92II CATG 2 cut(s) 357, 521
KflI GGGWCCC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 2 cut(s) 427, 822
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 2 cut(s) 435, 506
LweI GCATC 2 cut(s) 274, 277
MaeI CTAG 3 cut(s) 303, 557, 913
MaeII ACGT 3 cut(s) 589, 702, 718
MaeIII GTNAC 4 cut(s) 35, 377, 640, 883
MalI GATC 2 cut(s) 429, 824
MbiI CCGCTC 1 cut(s) 515
MboI GATC 2 cut(s) 427, 822
MboII GAAGA 2 cut(s) 515, 913
MluCI AATT 6 cut(s) 78, 325, 528, 645, 658, 863
MlyI GAGTC 3 cut(s) 232, 374, 433
MnlI CCTC 7 cut(s) 122, 211, 367, 429, 514, 682, 773
MseI TTAA 3 cut(s) 324, 699, 722
MspI CCGG 2 cut(s) 68, 613
MspR9I CCNGG 3 cut(s) 613, 614, 881
MvaI CCWGG 1 cut(s) 881
MwoI GCNNNNNNNGC 1 cut(s) 454
NciI CCSGG 2 cut(s) 613, 614
NdeI CATATG 1 cut(s) 95
NdeII GATC 2 cut(s) 427, 822
NlaIII CATG 2 cut(s) 357, 521
NlaIV GGNNCC 3 cut(s) 143, 144, 511
NmuCI GTSAC 2 cut(s) 35, 377
NspI RCATGY 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 234
PagI TCATGA 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 4 cut(s) 352, 450, 496, 514
PleI GAGTC 3 cut(s) 231, 374, 433
PpsI GAGTC 3 cut(s) 231, 374, 433
PpuMI RGGWCCY 1 cut(s) 142
Psp1406I AACGTT 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 879
PspGI CCWGG 1 cut(s) 879
PspN4I GGNNCC 3 cut(s) 143, 144, 511
PspPI GGNCC 2 cut(s) 142, 510
PspPPI RGGWCCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 324, 699, 722
SatI GCNGC 4 cut(s) 351, 449, 495, 513
Sau3AI GATC 2 cut(s) 427, 822
Sau96I GGNCC 2 cut(s) 142, 510
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 3 cut(s) 232, 374, 433
ScrFI CCNGG 3 cut(s) 613, 614, 881
SfaNI GCATC 2 cut(s) 274, 277
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 142
SlaI CTCGAG 1 cut(s) 234
SmaI CCCGGG 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 234, 890
SmoI CTYRAG 2 cut(s) 234, 890
Sse9I AATT 6 cut(s) 78, 325, 528, 645, 658, 863
SsiI CCGC 2 cut(s) 350, 513
SspMI CTAG 3 cut(s) 303, 557, 913
StyD4I CCNGG 3 cut(s) 611, 612, 879
TaaI ACNGT 2 cut(s) 163, 471
TaiI ACGT 3 cut(s) 592, 705, 721
TaqI TCGA 3 cut(s) 8, 235, 430
TasI AATT 6 cut(s) 78, 325, 528, 645, 658, 863
TatI WGTACW 1 cut(s) 271
TauI GCSGC 2 cut(s) 353, 515
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 3 cut(s) 324, 699, 722
Tru9I TTAA 3 cut(s) 324, 699, 722
TscAI CASTG 2 cut(s) 315, 340
TseFI GTSAC 2 cut(s) 35, 377
TseI GCWGC 2 cut(s) 448, 494
Tsp45I GTSAC 2 cut(s) 35, 377
TspDTI ATGAA 6 cut(s) 72, 172, 189, 318, 876, 914
TspMI CCCGGG 1 cut(s) 612
TspRI CASTG 2 cut(s) 315, 340
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 863
XceI RCATGY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 234
XmaI CCCGGG 1 cut(s) 612
XspI CTAG 3 cut(s) 303, 557, 913
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.