Rorug03G0170200

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000620
Physical Location & Seq
Forward (+)
14373555 .. 14375983
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0170200.1

Sequence Viewer

Length: 264 bp
ATGGTTTGCGTGATGTGCTTGATTCCTCTTTTTCTCGTCCCAATCGTCAACATCCTGCCTCTTCTCTTCGATTACATCATGGGAAGAATTTATGGACTTTTGGGATGGGAGTACAGGAAGCCCGAAAGAGCTCCTCCGGCTTGTCCTTACAAGCCTGCAGCCCAAAACAGCAGCAAAGTGACAGAAAAACCTGAACCTGGGCCACCAGACTCTCTGCCAGAAGCAACGGCAGCTCCCCGAGCGGTAGAATTGAAGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

87

Amino Acids

9.64

Weight (kDa)

6.21

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AciI CCGC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 2 cut(s) 131, 233
AluI AGCT 2 cut(s) 131, 233
Alw21I GWGCWC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 158, 171, 230
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 237
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 170, 183, 242
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 3 cut(s) 159, 172, 231
BlsI GCNGC 3 cut(s) 160, 173, 232
Bme1390I CCNGG 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 51, 110
BseLI CCNNNNNNNGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 170, 183, 242
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 133
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 66, 71
BstC8I GCNNGC 1 cut(s) 156
BstF5I GGATG 2 cut(s) 51, 110
BstMWI GCNNNNNNNGC 4 cut(s) 15, 137, 230, 239
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 170, 183, 242
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 51, 110
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 121, 131, 140, 154, 161, 202, 233
CviKI_1 RGCY 7 cut(s) 121, 131, 140, 154, 161, 202, 233
CviQI GTAC 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 66, 71
EarI CTCTTC 2 cut(s) 66, 71
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 93
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 159, 172, 231
FokI GGATG 2 cut(s) 38, 117
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 159, 172, 231
GluI GCNGC 3 cut(s) 159, 172, 231
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 22, 209
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 137, 230, 239
Hsp92II CATG 1 cut(s) 82
LmnI GCTCC 2 cut(s) 136, 238
LpnPI CCDG 9 cut(s) 68, 100, 150, 168, 183, 204, 210, 219, 231
Lsp1109I GCAGC 3 cut(s) 170, 183, 242
MaeIII GTNAC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 242
MboII GAAGA 3 cut(s) 53, 58, 96
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 87, 248
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 36, 69, 144
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 4 cut(s) 15, 137, 230, 239
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 160, 173, 232
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 133
SatI GCNGC 3 cut(s) 159, 172, 231
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 133, 193, 199, 235
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 87, 248
SsiI CCGC 1 cut(s) 242
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 87, 248
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 22
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 158, 171, 230
Tsp45I GTSAC 1 cut(s) 178
XapI RAATTY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.