RLG00000023612

F-box-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
26004952 .. 26007738
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023612

Sequence Viewer

Length: 1020 bp
ATGTCTTGCAATGAAAGAAATAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGCTGCCAGTCGAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAAAAATATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAACATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTGAGAGTGATAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCCACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCCTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGCGTTTACTGATGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTGGACTGGAATAAAGTTAGTGTTGTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAGAAAACGACGGTCGTCCAAAATTTGCTAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGGCCAAAAGTGGAGAGACTGGGGAGATAGTACATAAGCCGAGCCTGATAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTGTTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

340

Amino Acids

39.43

Weight (kDa)

5.83

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 50 1.3e-10 F-box domain
F-box-like PF12937 12 - 46 1e-07 F-box-like
FBA_3 PF08268 67 - 258 7e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 989
AccI GTMKAC 1 cut(s) 363
AciI CCGC 2 cut(s) 309, 441
AclWI GGATC 2 cut(s) 171, 332
AcsI RAATTY 3 cut(s) 806, 828, 842
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 3 cut(s) 175, 563, 942
AfiI CCNNNNNNNGG 4 cut(s) 639, 776, 777, 989
AgsI TTSAA 5 cut(s) 100, 134, 231, 457, 575
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 3 cut(s) 424, 502, 520
AluI AGCT 3 cut(s) 424, 502, 520
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 484, 920
AlwI GGATC 2 cut(s) 171, 332
AoxI GGCC 2 cut(s) 779, 912
ApeKI GCWGC 3 cut(s) 73, 181, 443
ApoI RAATTY 3 cut(s) 806, 828, 842
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
AspS9I GGNCC 1 cut(s) 779
AsuHPI GGTGA 2 cut(s) 308, 401
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 60, 168, 430
BccI CCATC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 623
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 484, 920
BfaI CTAG 2 cut(s) 264, 566
BfmI CTRYAG 1 cut(s) 874
BglII AGATCT 1 cut(s) 583
BisI GCNGC 3 cut(s) 74, 182, 444
BlsI GCNGC 3 cut(s) 75, 183, 445
Bme1390I CCNGG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 779
BmrFI CCNGG 1 cut(s) 623
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 1 cut(s) 969
BmuI ACTGGG 1 cut(s) 939
BoxI GACNNNNGTC 1 cut(s) 798
Bpu10I CCTNAGC 2 cut(s) 92, 813
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 621, 622, 633
Bsc4I CCNNNNNNNGG 4 cut(s) 639, 776, 777, 989
Bse1I ACTGG 4 cut(s) 77, 391, 644, 934
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 621, 622, 633
BseLI CCNNNNNNNGG 4 cut(s) 639, 776, 777, 989
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 4 cut(s) 77, 391, 644, 934
BseRI GAGGAG 1 cut(s) 914
BseXI GCAGC 3 cut(s) 60, 168, 430
BsgI GTGCAG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 2 cut(s) 781, 914
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 1 cut(s) 504
BslFI GGGAC 2 cut(s) 422, 884
BslI CCNNNNNNNGG 4 cut(s) 639, 776, 777, 989
BsmAI GTCTC 2 cut(s) 484, 920
BsmFI GGGAC 2 cut(s) 422, 884
BsnI GGCC 2 cut(s) 781, 914
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 163, 337, 583, 759
BspACI CCGC 2 cut(s) 309, 441
BspANI GGCC 2 cut(s) 781, 914
BspPI GGATC 2 cut(s) 171, 332
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 4 cut(s) 77, 391, 644, 934
BssECI CCNNGG 3 cut(s) 621, 622, 633
BssMI GATC 4 cut(s) 163, 337, 583, 759
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 289, 797
Bst6I CTCTTC 2 cut(s) 251, 621
BstC8I GCNNGC 2 cut(s) 113, 241
BstDEI CTNAG 4 cut(s) 92, 496, 813, 1002
BstKTI GATC 4 cut(s) 166, 340, 586, 762
BstMAI GTCTC 2 cut(s) 484, 920
BstMBI GATC 4 cut(s) 163, 337, 583, 759
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 623
BstPAI GACNNNNGTC 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 621
BstSFI CTRYAG 1 cut(s) 874
BstV1I GCAGC 3 cut(s) 60, 168, 430
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 2 cut(s) 781, 914
BtgZI GCGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 384, 491
Cac8I GCNNGC 2 cut(s) 113, 241
Cfr13I GGNCC 1 cut(s) 779
Csp6I GTAC 3 cut(s) 174, 562, 941
CviAII CATG 2 cut(s) 206, 757
CviJI RGCY 9 cut(s) 73, 243, 424, 502, 520, 781, 914, 949, 954
CviKI_1 RGCY 9 cut(s) 73, 243, 424, 502, 520, 781, 914, 949, 954
CviQI GTAC 3 cut(s) 174, 562, 941
DdeI CTNAG 4 cut(s) 92, 496, 813, 1002
DpnI GATC 4 cut(s) 165, 339, 585, 761
DpnII GATC 4 cut(s) 163, 337, 583, 759
DraI TTTAAA 1 cut(s) 432
DraIII CACNNNGTG 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 251, 621
EarI CTCTTC 2 cut(s) 251, 621
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 2 cut(s) 209, 760
FaqI GGGAC 2 cut(s) 422, 884
FatI CATG 2 cut(s) 205, 756
FauI CCCGC 2 cut(s) 316, 448
FbaI TGATCA 1 cut(s) 759
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 74, 182, 444
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 3 cut(s) 74, 182, 444
FspBI CTAG 2 cut(s) 264, 566
GluI GCNGC 3 cut(s) 74, 182, 444
HaeIII GGCC 2 cut(s) 781, 914
Hin1II CATG 2 cut(s) 209, 760
HinfI GANTC 6 cut(s) 47, 83, 130, 453, 701, 748
HphI GGTGA 2 cut(s) 308, 401
Hpy166II GTNNAC 3 cut(s) 364, 540, 596
Hpy188I TCNGA 2 cut(s) 168, 302
Hpy188III TCNNGA 2 cut(s) 134, 892
Hpy8I GTNNAC 3 cut(s) 364, 540, 596
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 3 cut(s) 843, 860, 1004
HpyCH4III ACNGT 2 cut(s) 289, 797
HpyCH4V TGCA 6 cut(s) 9, 111, 198, 239, 446, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 4 cut(s) 92, 496, 813, 1002
Hsp92II CATG 2 cut(s) 209, 760
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 4 cut(s) 163, 337, 583, 759
LmnI GCTCC 2 cut(s) 507, 736
Lsp1109I GCAGC 3 cut(s) 60, 168, 430
LweI GCATC 1 cut(s) 969
MaeI CTAG 2 cut(s) 264, 566
MaeIII GTNAC 2 cut(s) 720, 995
MalI GATC 4 cut(s) 165, 339, 585, 761
MboI GATC 4 cut(s) 163, 337, 583, 759
MboII GAAGA 5 cut(s) 268, 560, 563, 566, 608
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 5 cut(s) 142, 280, 806, 828, 842
MlyI GAGTC 2 cut(s) 92, 757
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 5 cut(s) 354, 691, 722, 892, 904
MseI TTAA 3 cut(s) 375, 431, 966
MslI CAYNNNNRTG 1 cut(s) 858
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 623
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 4 cut(s) 163, 337, 583, 759
NlaIII CATG 2 cut(s) 209, 760
NmeAIII GCCGAG 1 cut(s) 975
PasI CCCWGGG 1 cut(s) 622
PfeI GAWTC 4 cut(s) 47, 130, 453, 701
PflMI CCANNNNNTGG 1 cut(s) 989
PkrI GCNGC 3 cut(s) 75, 183, 445
PleI GAGTC 2 cut(s) 91, 756
PpsI GAGTC 2 cut(s) 91, 756
PshAI GACNNNNGTC 1 cut(s) 798
PsiI TTATAA 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspPI GGNCC 1 cut(s) 779
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 3 cut(s) 175, 563, 942
RsaNI GTAC 3 cut(s) 174, 562, 941
RseI CAYNNNNRTG 1 cut(s) 858
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 375, 431, 966
SatI GCNGC 3 cut(s) 74, 182, 444
Sau3AI GATC 4 cut(s) 163, 337, 583, 759
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 2 cut(s) 92, 757
ScrFI CCNGG 1 cut(s) 623
SduI GDGCHC 1 cut(s) 504
SetI ASST 8 cut(s) 98, 346, 426, 504, 522, 567, 714, 1015
SfaNI GCATC 1 cut(s) 969
SfcI CTRYAG 1 cut(s) 874
SmiI ATTTAAAT 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 858
Sse9I AATT 5 cut(s) 142, 280, 806, 828, 842
SsiI CCGC 2 cut(s) 309, 441
SspMI CTAG 2 cut(s) 264, 566
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 621
StyI CCWWGG 1 cut(s) 633
SwaI ATTTAAAT 1 cut(s) 432
TaaI ACNGT 2 cut(s) 289, 797
TaqI TCGA 2 cut(s) 81, 284
TasI AATT 5 cut(s) 142, 280, 806, 828, 842
TatI WGTACW 2 cut(s) 173, 940
TfiI GAWTC 4 cut(s) 47, 130, 453, 701
Tru1I TTAA 3 cut(s) 375, 431, 966
Tru9I TTAA 3 cut(s) 375, 431, 966
TscAI CASTG 2 cut(s) 391, 491
TseI GCWGC 3 cut(s) 73, 181, 443
TspDTI ATGAA 8 cut(s) 27, 136, 225, 345, 561, 707, 873, 879
TspRI CASTG 2 cut(s) 391, 491
Van91I CCANNNNNTGG 1 cut(s) 989
XapI RAATTY 3 cut(s) 806, 828, 842
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 2 cut(s) 264, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.