FvH4_6g21492

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000620
Physical Location & Seq
Forward (+)
15069993 .. 15070874
882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21492.t1

Sequence Viewer

Length: 537 bp
ATGCTTGAAAGTTTAACTGTTGGAAAAGATGAGCAGTGGAGAACTCTGATCCTCCCCAACCAAACTGTCATGAATGCTTGCGGTGGATATGTGTCGAAAGCATACTTCAGTGGAGTACGCAAGGCTCAAGGGGTTGCACATTTGACCCAAATAGTTAGAGTGATTGGACCAGATTATTACATACAAGTTCAATCTTTGGATGTTTGGAGAGAATGTTTCTGCACTACTACTCTGCCCGAGGGAGTTTTCCAAGACCTGACAAAAGTTCTGTGTTACATTTGGAATGGTTGCACAGCTGTTGCTGATGTAGTAGAGCAAACCGTTCACTTTTTAGCCTTGGAAGATTTTGAAGAGCACAAGTGGAGTAAAAACGAAACCAAAATTCCCTTGAAAGCTTTTAAAGATTGTCCTCCACATTCGAGGGGTCAACATGGTTCAACTGGAGTTCTTAGTGGAGTGAGCAATGATTTAACATATGATCAGAAAAGGGGGACCTTGGAACTTATGGGGAGAAATTATACAAGCCAAGTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

179

Amino Acids

19.98

Weight (kDa)

6.19

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 5 cut(s) 8, 191, 350, 391, 438
AluBI AGCT 2 cut(s) 296, 395
AluI AGCT 2 cut(s) 296, 395
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 236
ApoI RAATTY 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 167, 492
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 167, 492
Bbv12I GWGCWC 1 cut(s) 357
BclI TGATCA 1 cut(s) 478
Bme18I GGWCC 2 cut(s) 167, 492
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 167, 492
BmiI GGNNCC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 237, 336, 495
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 1 cut(s) 469
BseDI CCNNGG 3 cut(s) 237, 336, 495
BseGI GGATG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 505
BsmI GAATGC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 48, 478
BspACI CCGC 1 cut(s) 81
BspHI TCATGA 2 cut(s) 69, 533
BspLI GGNNCC 1 cut(s) 493
BspPI GGATC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 3 cut(s) 237, 336, 495
BssMI GATC 2 cut(s) 48, 478
BssT1I CCWWGG 2 cut(s) 336, 495
Bst4CI ACNGT 3 cut(s) 19, 67, 322
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 2 cut(s) 51, 481
BstMBI GATC 2 cut(s) 48, 478
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 115
Cac8I GCNNGC 1 cut(s) 79
CciI TCATGA 2 cut(s) 69, 533
Cfr13I GGNCC 2 cut(s) 167, 492
Csp6I GTAC 1 cut(s) 116
CviAII CATG 3 cut(s) 70, 431, 534
CviJI RGCY 5 cut(s) 125, 296, 335, 395, 525
CviKI_1 RGCY 5 cut(s) 125, 296, 335, 395, 525
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 449
DpnI GATC 2 cut(s) 50, 480
DpnII GATC 2 cut(s) 48, 478
DraI TTTAAA 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 336, 495
Eco47I GGWCC 2 cut(s) 167, 492
Eco57I CTGAAG 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 492
EcoT14I CCWWGG 2 cut(s) 336, 495
ErhI CCWWGG 2 cut(s) 336, 495
FaeI CATG 3 cut(s) 73, 434, 537
FaqI GGGAC 1 cut(s) 505
FatI CATG 3 cut(s) 69, 430, 533
FauNDI CATATG 1 cut(s) 475
FbaI TGATCA 1 cut(s) 478
FokI GGATG 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 462
Hin1II CATG 3 cut(s) 73, 434, 537
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 393
Hpy166II GTNNAC 2 cut(s) 325, 428
Hpy188I TCNGA 2 cut(s) 48, 483
Hpy188III TCNNGA 2 cut(s) 70, 534
Hpy8I GTNNAC 2 cut(s) 325, 428
HpyCH4III ACNGT 3 cut(s) 19, 67, 322
HpyCH4V TGCA 3 cut(s) 137, 222, 291
HpyF3I CTNAG 1 cut(s) 449
Hsp92II CATG 3 cut(s) 73, 434, 537
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 48, 478
LguI GCTCTTC 1 cut(s) 345
LpnPI CCDG 3 cut(s) 183, 269, 426
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 50, 480
MboI GATC 2 cut(s) 48, 478
MboII GAAGA 2 cut(s) 353, 362
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 381, 514
MnlI CCTC 4 cut(s) 62, 232, 414, 420
MseI TTAA 3 cut(s) 14, 399, 470
MspA1I CMGCKG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 79
NdeI CATATG 1 cut(s) 475
NdeII GATC 2 cut(s) 48, 478
NlaIII CATG 3 cut(s) 73, 434, 537
NlaIV GGNNCC 1 cut(s) 493
PagI TCATGA 2 cut(s) 69, 533
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 2 cut(s) 167, 492
PspPPI RGGWCCY 1 cut(s) 492
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 14, 399, 470
Sau3AI GATC 2 cut(s) 48, 478
Sau96I GGNCC 2 cut(s) 167, 492
SduI GDGCHC 1 cut(s) 357
SetI ASST 4 cut(s) 258, 298, 397, 497
SinI GGWCC 2 cut(s) 167, 492
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 381, 514
SsiI CCGC 1 cut(s) 81
StyI CCWWGG 2 cut(s) 336, 495
TaaI ACNGT 3 cut(s) 19, 67, 322
TaqI TCGA 2 cut(s) 95, 419
TasI AATT 2 cut(s) 381, 514
Tru1I TTAA 3 cut(s) 14, 399, 470
Tru9I TTAA 3 cut(s) 14, 399, 470
TscAI CASTG 2 cut(s) 41, 115
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 2 cut(s) 41, 115
VpaK11BI GGWCC 2 cut(s) 167, 492
XapI RAATTY 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.