Rh3DG245900

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000620
Physical Location & Seq
Reverse (-)
24067601 .. 24071053
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG245900.1

Sequence Viewer

Length: 1089 bp
ATGATGTCTTGCAATGAAAGAAAAAAAAGGAGATTAGAACTTCCCTTTGATTCCATTGTTGAGATTTTGAGTTGGTTGCCAGTCGAGTCTTTGCTAAGGTTCAAGTGCGTGTGCAAGCGATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAAAAATATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTGAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCTTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGCGTTTAGAGGATATTATAGCAGAGTAAATAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTACGTTTACTGATGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATGAAGTTAGTGTTCTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCATGGTGTTACAAGACTTTAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAAAACGACGGTCGTCCAAAATTTGCTAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGACAGAGGAGATGAGAGAGGCCAAATGTGGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGATAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

362

Amino Acids

42.2

Weight (kDa)

6.36

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 51 1.4e-10 F-box domain
F-box-like PF12937 13 - 47 1.1e-07 F-box-like
FBA_3 PF08268 68 - 282 1.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 1058
AccI GTMKAC 1 cut(s) 366
AccII CGCG 1 cut(s) 314
AciI CCGC 2 cut(s) 312, 444
AclWI GGATC 2 cut(s) 174, 335
AcsI RAATTY 4 cut(s) 217, 875, 897, 911
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 2 cut(s) 178, 632
AfiI CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
AgsI TTSAA 7 cut(s) 103, 137, 234, 460, 575, 596, 644
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 3 cut(s) 427, 505, 523
AluI AGCT 3 cut(s) 427, 505, 523
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 487, 989
AlwI GGATC 2 cut(s) 174, 335
AoxI GGCC 2 cut(s) 848, 981
ApeKI GCWGC 2 cut(s) 184, 446
ApoI RAATTY 4 cut(s) 217, 875, 897, 911
ArsI GACNNNNNNTTYG 2 cut(s) 802, 834
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 2 cut(s) 311, 404
BanII GRGCYC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 171, 433
BccI CCATC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 692
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 487, 989
BfaI CTAG 3 cut(s) 267, 279, 635
BfmI CTRYAG 1 cut(s) 943
BglII AGATCT 1 cut(s) 652
BisI GCNGC 2 cut(s) 185, 447
BlsI GCNGC 2 cut(s) 186, 448
Bme1390I CCNGG 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 848
BmrFI CCNGG 1 cut(s) 692
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 1008
BoxI GACNNNNGTC 1 cut(s) 867
Bpu10I CCTNAGC 2 cut(s) 95, 882
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 690, 691
Bsc4I CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
Bse1I ACTGG 4 cut(s) 80, 394, 713, 1003
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 2 cut(s) 690, 691
BseLI CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 4 cut(s) 80, 394, 713, 1003
BseRI GAGGAG 1 cut(s) 983
BseXI GCAGC 2 cut(s) 171, 433
BsgI GTGCAG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 2 cut(s) 850, 983
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 507
BslFI GGGAC 2 cut(s) 425, 953
BslI CCNNNNNNNGG 4 cut(s) 708, 845, 846, 1058
BsmAI GTCTC 2 cut(s) 487, 989
BsmFI GGGAC 2 cut(s) 425, 953
BsnI GGCC 2 cut(s) 850, 983
Bso31I GGTCTC 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 4 cut(s) 166, 340, 652, 828
BspACI CCGC 2 cut(s) 312, 444
BspANI GGCC 2 cut(s) 850, 983
BspFNI CGCG 1 cut(s) 314
BspPI GGATC 2 cut(s) 174, 335
BspTNI GGTCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 4 cut(s) 80, 394, 713, 1003
BssECI CCNNGG 2 cut(s) 690, 691
BssMI GATC 4 cut(s) 166, 340, 652, 828
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 292, 866
Bst6I CTCTTC 2 cut(s) 254, 690
BstC8I GCNNGC 2 cut(s) 116, 244
BstDEI CTNAG 4 cut(s) 95, 703, 882, 1071
BstFNI CGCG 1 cut(s) 314
BstKTI GATC 4 cut(s) 169, 343, 655, 831
BstMAI GTCTC 2 cut(s) 487, 989
BstMBI GATC 4 cut(s) 166, 340, 652, 828
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 692
BstPAI GACNNNNGTC 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 690
BstSFI CTRYAG 1 cut(s) 943
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 171, 433
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
BsuRI GGCC 2 cut(s) 850, 983
BtgZI GCGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 387, 494
Cac8I GCNNGC 2 cut(s) 116, 244
Cfr13I GGNCC 1 cut(s) 848
Csp6I GTAC 2 cut(s) 177, 631
CviAII CATG 3 cut(s) 209, 784, 826
CviJI RGCY 8 cut(s) 246, 427, 505, 523, 850, 983, 1018, 1023
CviKI_1 RGCY 8 cut(s) 246, 427, 505, 523, 850, 983, 1018, 1023
CviQI GTAC 2 cut(s) 177, 631
DdeI CTNAG 4 cut(s) 95, 703, 882, 1071
DpnI GATC 4 cut(s) 168, 342, 654, 830
DpnII GATC 4 cut(s) 166, 340, 652, 828
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 254, 690
EarI CTCTTC 2 cut(s) 254, 690
Ecl136II GAGCTC 1 cut(s) 505
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 507
FaeI CATG 3 cut(s) 212, 787, 829
FaqI GGGAC 2 cut(s) 425, 953
FatI CATG 3 cut(s) 208, 783, 825
FauI CCCGC 2 cut(s) 319, 451
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 185, 447
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 2 cut(s) 185, 447
FspBI CTAG 3 cut(s) 267, 279, 635
GluI GCNGC 2 cut(s) 185, 447
HaeIII GGCC 2 cut(s) 850, 983
Hin1II CATG 3 cut(s) 212, 787, 829
HinfI GANTC 7 cut(s) 50, 86, 133, 316, 456, 770, 817
HphI GGTGA 2 cut(s) 311, 404
Hpy166II GTNNAC 3 cut(s) 367, 609, 665
Hpy188I TCNGA 2 cut(s) 171, 305
Hpy188III TCNNGA 2 cut(s) 137, 961
Hpy8I GTNNAC 3 cut(s) 367, 609, 665
Hpy99I CGWCG 1 cut(s) 866
HpyAV CCTTC 4 cut(s) 569, 912, 929, 1073
HpyCH4III ACNGT 2 cut(s) 292, 866
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 6 cut(s) 12, 114, 201, 242, 449, 922
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 4 cut(s) 95, 703, 882, 1071
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 3 cut(s) 212, 787, 829
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 4 cut(s) 166, 340, 652, 828
LmnI GCTCC 2 cut(s) 510, 805
Lsp1109I GCAGC 2 cut(s) 171, 433
LweI GCATC 1 cut(s) 1038
MaeI CTAG 3 cut(s) 267, 279, 635
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 789
MalI GATC 4 cut(s) 168, 342, 654, 830
MboI GATC 4 cut(s) 166, 340, 652, 828
MboII GAAGA 6 cut(s) 271, 629, 632, 635, 677, 719
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 7 cut(s) 145, 217, 283, 597, 875, 897, 911
MlyI GAGTC 3 cut(s) 95, 310, 826
MmeI TCCRAC 1 cut(s) 713
MnlI CCTC 6 cut(s) 357, 539, 760, 791, 961, 973
MseI TTAA 4 cut(s) 378, 434, 801, 1035
MslI CAYNNNNRTG 1 cut(s) 927
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 692
MvaI CCWGG 1 cut(s) 692
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 4 cut(s) 166, 340, 652, 828
NlaIII CATG 3 cut(s) 212, 787, 829
PasI CCCWGGG 1 cut(s) 691
PfeI GAWTC 4 cut(s) 50, 133, 456, 770
PflMI CCANNNNNTGG 1 cut(s) 1058
PkrI GCNGC 2 cut(s) 186, 448
PleI GAGTC 3 cut(s) 94, 310, 825
PpsI GAGTC 3 cut(s) 94, 310, 825
PshAI GACNNNNGTC 1 cut(s) 867
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 690
PspGI CCWGG 1 cut(s) 690
PspPI GGNCC 1 cut(s) 848
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 2 cut(s) 178, 632
RsaNI GTAC 2 cut(s) 177, 631
RseI CAYNNNNRTG 1 cut(s) 927
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 378, 434, 801, 1035
SatI GCNGC 2 cut(s) 185, 447
Sau3AI GATC 4 cut(s) 166, 340, 652, 828
Sau96I GGNCC 1 cut(s) 848
SchI GAGTC 3 cut(s) 95, 310, 826
ScrFI CCNGG 1 cut(s) 692
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 1 cut(s) 1038
SfcI CTRYAG 1 cut(s) 943
SmiI ATTTAAAT 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 927
Sse9I AATT 7 cut(s) 145, 217, 283, 597, 875, 897, 911
SsiI CCGC 2 cut(s) 312, 444
SspMI CTAG 3 cut(s) 267, 279, 635
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 690
SwaI ATTTAAAT 1 cut(s) 435
TaaI ACNGT 2 cut(s) 292, 866
TaiI ACGT 1 cut(s) 608
TaqI TCGA 2 cut(s) 84, 287
TasI AATT 7 cut(s) 145, 217, 283, 597, 875, 897, 911
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 4 cut(s) 50, 133, 456, 770
Tru1I TTAA 4 cut(s) 378, 434, 801, 1035
Tru9I TTAA 4 cut(s) 378, 434, 801, 1035
TscAI CASTG 2 cut(s) 394, 494
TseI GCWGC 2 cut(s) 184, 446
TspDTI ATGAA 9 cut(s) 30, 139, 228, 348, 630, 729, 776, 942, 948
TspRI CASTG 2 cut(s) 394, 494
Van91I CCANNNNNTGG 1 cut(s) 1058
XapI RAATTY 4 cut(s) 217, 875, 897, 911
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 3 cut(s) 267, 279, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.