RchiOBHm_Chr5g0004511

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000620
Physical Location & Seq
Reverse (-)
2913381 .. 2914394
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28574

Sequence Viewer

Length: 1014 bp
ATGACTGAAGAAGTGTATGAGCTTCCTTTCGATGTTATCCTTGAGATTTTGACTTGGTTGCCAGTAAATTCTCTACTAAGATTTAAGTGTGTCTGCAAGCAATGGTGTTCCTTGATCAAGGAAGATCGCAAGTTCATCACAAAATATATGGATCGGGCTACTCCTCTCCAACTTACTCATCTGCATAAATGCGGAGATTTCTACAAAGTGGACTATGGCTATGGCTTATATCTGGAAAAAAGTGATGATTTTGGCTGTCGTATCAGAAATCCTGCAACCCAACAAGTACTTTACTTACCCTATGCAGATGAGGATATTGTCCTACTACGTTTTTATTATGATTCAGTCACCGATGAGCGTAAAGTGCTACGTCGTCGCAATTCAGATAATGTTTTATCATATACATTTGAAATTATAACAATTGGAAAGGATGACCAATGGAGACCCCTATATAATATTGGCAAATCACCAAGGTCTGTACATTTTTATGGAGCAGATGAGGGTTCAGATTGGTTATATAACGACTTTAATACTGTACCCCCAGAAATTCATTCTTGTGATACGAGGAGGGAATGTATCACGACTAATGCTGTACCCCCAGGAGCTTTTACAGATTTGACAAAAGTATCGGTTCTCCTTTGGAACGATCGTCTCGCTGTTGGTGATATAGCAAATGAAGCCCTAAATGTCTTGGTGTTAGAGGACTTCAAGGAGCACAAATGGAGCAAAAACAAGATCGTTGGTCCCTTGAAATTTTTGAAGGATGACCCTCTTTTCCAGAAGAATTGGAGTATTCCTTGGTCATTTGATTCTGAGAAACTCATGTTCCTTATGAGGGTGAATGGATCATTAAGGCGCATTTTTTATGACACGAGAAGGGAGATAATTATGAAGATCAAAGATGAACGAATGGAGCCTGGGATGGAACATATGGAATTCTATAGGCCAAGCCTAGTGACTGTTAAGGGAATGATACCTGAAAATGCTGGATCGATAGCTAGTAACATCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

337

Amino Acids

39.54

Weight (kDa)

5.95

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 45 1.2e-10 F-box domain
F-box-like PF12937 7 - 42 5.7e-08 F-box-like
FBA_3 PF08268 80 - 305 3.9e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AciI CCGC 1 cut(s) 192
AclWI GGATC 3 cut(s) 159, 853, 997
AcsI RAATTY 4 cut(s) 67, 546, 752, 935
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 4 cut(s) 288, 480, 537, 594
AfiI CCNNNNNNNGG 1 cut(s) 835
AgsI TTSAA 4 cut(s) 410, 709, 751, 760
AjnI CCWGG 2 cut(s) 598, 916
AluBI AGCT 3 cut(s) 22, 605, 998
AluI AGCT 3 cut(s) 22, 605, 998
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 2 cut(s) 436, 656
AlwI GGATC 3 cut(s) 159, 853, 997
AoxI GGCC 1 cut(s) 944
ApoI RAATTY 4 cut(s) 67, 546, 752, 935
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 4 cut(s) 340, 459, 674, 850
AvaII GGWCC 1 cut(s) 743
BaeI ACNNNNGTAYC 2 cut(s) 609, 642
BauI CACGAG 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 717
BccI CCATC 1 cut(s) 916
BciT130I CCWGG 2 cut(s) 600, 918
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 436, 656
BfaI CTAG 2 cut(s) 953, 999
BfmI CTRYAG 1 cut(s) 940
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 600, 918
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 745, 915
BmrFI CCNGG 2 cut(s) 600, 918
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 992
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 4 cut(s) 470, 598, 797, 917
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 2 cut(s) 600, 918
BseCI ATCGAT 1 cut(s) 992
BseDI CCNNGG 4 cut(s) 470, 598, 797, 917
BseGI GGATG 3 cut(s) 436, 769, 927
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 153, 580
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 1 cut(s) 946
BshVI ATCGAT 1 cut(s) 992
BsiEI CGRYCG 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 717
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 2 cut(s) 436, 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 1 cut(s) 946
Bso31I GGTCTC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 717
Bsp1407I TGTACA 1 cut(s) 478
Bsp143I GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 946
BspCNI CTCAG 1 cut(s) 805
BspDI ATCGAT 1 cut(s) 992
BspLI GGNNCC 2 cut(s) 745, 915
BspPI GGATC 3 cut(s) 159, 853, 997
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 478
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 4 cut(s) 470, 598, 797, 917
BssMI GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
BssSI CACGAG 1 cut(s) 871
BssT1I CCWWGG 2 cut(s) 470, 797
Bst2BI CACGAG 1 cut(s) 871
Bst2UI CCWGG 2 cut(s) 600, 918
Bst4CI ACNGT 2 cut(s) 535, 961
BstAUI TGTACA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 77, 813
BstF5I GGATG 3 cut(s) 436, 769, 927
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 8 cut(s) 117, 127, 154, 649, 738, 848, 897, 992
BstMAI GTCTC 2 cut(s) 436, 656
BstMBI GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 2 cut(s) 364, 677
BstNI CCWGG 2 cut(s) 600, 918
BstSCI CCNGG 2 cut(s) 598, 916
BstSFI CTRYAG 1 cut(s) 940
Bsu15I ATCGAT 1 cut(s) 992
BsuRI GGCC 1 cut(s) 946
BsuTUI ATCGAT 1 cut(s) 992
BtsCI GGATG 3 cut(s) 436, 769, 927
Cac8I GCNNGC 1 cut(s) 98
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 1 cut(s) 743
ClaI ATCGAT 1 cut(s) 992
Csp6I GTAC 4 cut(s) 287, 479, 536, 593
CviAII CATG 1 cut(s) 823
CviQI GTAC 4 cut(s) 287, 479, 536, 593
DdeI CTNAG 2 cut(s) 77, 813
DpnI GATC 8 cut(s) 116, 126, 153, 648, 737, 847, 896, 991
DpnII GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
Eco130I CCWWGG 2 cut(s) 470, 797
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 743
Eco57I CTGAAG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 935
EcoRII CCWGG 2 cut(s) 598, 916
EcoT14I CCWWGG 2 cut(s) 470, 797
ErhI CCWWGG 2 cut(s) 470, 797
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 1 cut(s) 826
FaqI GGGAC 1 cut(s) 729
FatI CATG 1 cut(s) 822
FauNDI CATATG 1 cut(s) 930
FbaI TGATCA 1 cut(s) 114
FokI GGATG 3 cut(s) 443, 776, 934
FspBI CTAG 2 cut(s) 953, 999
GlaI GCGC 1 cut(s) 857
HaeIII GGCC 1 cut(s) 946
HhaI GCGC 1 cut(s) 858
Hin1II CATG 1 cut(s) 826
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HinfI GANTC 2 cut(s) 341, 809
HphI GGTGA 4 cut(s) 340, 459, 674, 850
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 4 cut(s) 266, 385, 508, 814
Hpy188III TCNNGA 3 cut(s) 233, 580, 778
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 2 cut(s) 375, 378
HpyAV CCTTC 2 cut(s) 754, 870
HpyCH4III ACNGT 2 cut(s) 535, 961
HpyCH4IV ACGT 2 cut(s) 328, 370
HpyCH4V TGCA 4 cut(s) 96, 184, 275, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 677
HpyF3I CTNAG 2 cut(s) 77, 813
HpySE526I ACGT 2 cut(s) 328, 370
Hsp92II CATG 1 cut(s) 826
HspAI GCGC 1 cut(s) 856
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
LmnI GCTCC 5 cut(s) 491, 602, 712, 723, 913
MaeI CTAG 2 cut(s) 953, 999
MaeII ACGT 2 cut(s) 328, 370
MaeIII GTNAC 3 cut(s) 346, 955, 1001
MalI GATC 8 cut(s) 116, 126, 153, 648, 737, 847, 896, 991
MboI GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
MboII GAAGA 4 cut(s) 20, 134, 793, 904
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 9 cut(s) 67, 379, 411, 420, 546, 752, 784, 885, 935
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 8 cut(s) 174, 304, 493, 558, 561, 694, 780, 828
MseI TTAA 5 cut(s) 84, 528, 851, 963, 1012
MslI CAYNNNNRTG 2 cut(s) 486, 555
MspR9I CCNGG 2 cut(s) 600, 918
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 2 cut(s) 600, 918
MwoI GCNNNNNNNGC 2 cut(s) 364, 677
NdeI CATATG 1 cut(s) 930
NdeII GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
NlaIII CATG 1 cut(s) 826
NlaIV GGNNCC 2 cut(s) 745, 915
NmuCI GTSAC 2 cut(s) 346, 955
PfeI GAWTC 2 cut(s) 341, 809
Ple19I CGATCG 1 cut(s) 649
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 598, 916
PspGI CCWGG 2 cut(s) 598, 916
PspN4I GGNNCC 2 cut(s) 745, 915
PspPI GGNCC 1 cut(s) 743
PvuI CGATCG 1 cut(s) 649
RsaI GTAC 4 cut(s) 288, 480, 537, 594
RsaNI GTAC 4 cut(s) 287, 479, 536, 593
RseI CAYNNNNRTG 2 cut(s) 486, 555
SaqAI TTAA 5 cut(s) 84, 528, 851, 963, 1012
Sau3AI GATC 8 cut(s) 114, 124, 151, 646, 735, 845, 894, 989
Sau96I GGNCC 1 cut(s) 743
ScaI AGTACT 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 600, 918
SduI GDGCHC 1 cut(s) 717
SetI ASST 7 cut(s) 24, 331, 373, 476, 607, 979, 1000
SfcI CTRYAG 1 cut(s) 940
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 2 cut(s) 486, 555
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 9 cut(s) 67, 379, 411, 420, 546, 752, 784, 885, 935
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 457
SspMI CTAG 2 cut(s) 953, 999
StyD4I CCNGG 2 cut(s) 598, 916
StyI CCWWGG 2 cut(s) 470, 797
TaaI ACNGT 2 cut(s) 535, 961
TaiI ACGT 2 cut(s) 331, 373
TaqI TCGA 2 cut(s) 30, 992
TasI AATT 9 cut(s) 67, 379, 411, 420, 546, 752, 784, 885, 935
TatI WGTACW 2 cut(s) 286, 478
TfiI GAWTC 2 cut(s) 341, 809
Tru1I TTAA 5 cut(s) 84, 528, 851, 963, 1012
Tru9I TTAA 5 cut(s) 84, 528, 851, 963, 1012
TseFI GTSAC 2 cut(s) 346, 955
Tsp45I GTSAC 2 cut(s) 346, 955
TspDTI ATGAA 5 cut(s) 124, 539, 690, 905, 918
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 4 cut(s) 67, 546, 752, 935
XspI CTAG 2 cut(s) 953, 999
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.