Rroxscaffold_1G00071010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000620
Physical Location & Seq
Forward (+)
91965573 .. 91972107
6535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071010.1

Sequence Viewer

Length: 162 bp
ATGATGAAGGACAAACTTCTTCGTGCGAAGATAATTACGAAGATCAAAGATGAACGGATGGAGCCTGGGAAGGAACATATGGAATTCTATAGGCCAAGCCTAGTGACTATTAAGGGAATGATACCTGAAAATGCTGGATCAATAGCTTGTAACATCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.06

Weight (kDa)

9.3

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 83
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 83
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 63
BshFI GGCC 1 cut(s) 94
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 42, 137
BspANI GGCC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 42, 137
Bst2UI CCWGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 2 cut(s) 45, 140
BstMBI GATC 2 cut(s) 42, 137
BstNI CCWGG 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 88
BsuRI GGCC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 63
CviJI RGCY 4 cut(s) 64, 94, 99, 146
CviKI_1 RGCY 4 cut(s) 64, 94, 99, 146
DpnI GATC 2 cut(s) 44, 139
DpnII GATC 2 cut(s) 42, 137
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 64
FaiI YATR 3 cut(s) 78, 80, 90
FauNDI CATATG 1 cut(s) 78
FokI GGATG 1 cut(s) 70
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 42, 137
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 51, 78, 120, 138
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 103, 149
MalI GATC 2 cut(s) 44, 139
MboI GATC 2 cut(s) 42, 137
MboII GAAGA 3 cut(s) 11, 40, 52
MluCI AATT 2 cut(s) 33, 83
MseI TTAA 2 cut(s) 111, 160
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 78
NdeII GATC 2 cut(s) 42, 137
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 111, 160
Sau3AI GATC 2 cut(s) 42, 137
ScrFI CCNGG 1 cut(s) 66
SetI ASST 2 cut(s) 127, 148
SfcI CTRYAG 1 cut(s) 88
SgeI CNNG 7 cut(s) 35, 77, 78, 108, 113, 137, 147
Sse9I AATT 2 cut(s) 33, 83
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 64
TasI AATT 2 cut(s) 33, 83
Tru1I TTAA 2 cut(s) 111, 160
Tru9I TTAA 2 cut(s) 111, 160
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 20, 66
TspGWI ACGGA 1 cut(s) 70
XapI RAATTY 1 cut(s) 83
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.