Rh3BG253800

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000620
Physical Location & Seq
Reverse (-)
24542715 .. 24543620
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG253800.1

Sequence Viewer

Length: 906 bp
ATGGATCGGACAAGTACAATGCTGCTCTTTTATCCTTGCAAATCCCATGATGAAAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTGCTAGTAAGGATGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCTGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCATTGGAAAAGATGAGCAGTGGAGACCCTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAGGGGTGTTTAGAGGATGTTACTCTAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTAGGTTTACTGATGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTAGACTGGAATAAAGTTAGTGTTGTTCTTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAAACATGATCATCATTCCCGTCAAAGGGCCAAAAAAGAACGACGGTCGTCCAAAATTTGCGAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGGTAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

301

Amino Acids

34.78

Weight (kDa)

5.95

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 18 - 226 5.5e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 875
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 152
AciI CCGC 2 cut(s) 150, 285
AclWI GGATC 2 cut(s) 12, 173
AcsI RAATTY 4 cut(s) 55, 707, 729, 743
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 2 cut(s) 16, 464
AfiI CCNNNNNNNGG 4 cut(s) 540, 677, 678, 875
AgsI TTSAA 5 cut(s) 72, 301, 407, 428, 476
AjnI CCWGG 2 cut(s) 522, 840
AluBI AGCT 3 cut(s) 265, 346, 364
AluI AGCT 3 cut(s) 265, 346, 364
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 328, 806
AlwI GGATC 2 cut(s) 12, 173
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 2 cut(s) 22, 287
ApoI RAATTY 4 cut(s) 55, 707, 729, 743
ArsI GACNNNNNNTTYG 2 cut(s) 634, 666
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 149, 242
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 9, 274
BciT130I CCWGG 2 cut(s) 524, 842
BclI TGATCA 1 cut(s) 660
BcoDI GTCTC 2 cut(s) 328, 806
BfaI CTAG 3 cut(s) 105, 117, 467
BfmI CTRYAG 1 cut(s) 775
BglII AGATCT 1 cut(s) 484
BisI GCNGC 2 cut(s) 23, 288
BlsI GCNGC 2 cut(s) 24, 289
Bme1390I CCNGG 2 cut(s) 524, 842
BmgT120I GGNCC 1 cut(s) 680
BmrFI CCNGG 2 cut(s) 524, 842
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 2 cut(s) 103, 855
BmuI ACTGGG 1 cut(s) 825
BoxI GACNNNNGTC 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 522, 523
Bsc4I CCNNNNNNNGG 4 cut(s) 540, 677, 678, 875
Bse1I ACTGG 3 cut(s) 232, 545, 820
BseBI CCWGG 2 cut(s) 524, 842
BseDI CCNNGG 2 cut(s) 522, 523
BseGI GGATG 2 cut(s) 118, 395
BseLI CCNNNNNNNGG 4 cut(s) 540, 677, 678, 875
BseNI ACTGG 3 cut(s) 232, 545, 820
BseRI GAGGAG 1 cut(s) 815
BseXI GCAGC 2 cut(s) 9, 274
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 700
BshFI GGCC 1 cut(s) 682
BsiEI CGRYCG 1 cut(s) 700
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 2 cut(s) 266, 785
BslI CCNNNNNNNGG 4 cut(s) 540, 677, 678, 875
BsmAI GTCTC 2 cut(s) 328, 806
BsmFI GGGAC 2 cut(s) 266, 785
BsnI GGCC 1 cut(s) 682
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 4, 178, 484, 660
BspACI CCGC 2 cut(s) 150, 285
BspANI GGCC 1 cut(s) 682
BspFNI CGCG 1 cut(s) 152
BspPI GGATC 2 cut(s) 12, 173
BspTNI GGTCTC 1 cut(s) 328
BsrI ACTGG 3 cut(s) 232, 545, 820
BssECI CCNNGG 2 cut(s) 522, 523
BssMI GATC 4 cut(s) 4, 178, 484, 660
Bst2UI CCWGG 2 cut(s) 524, 842
Bst4CI ACNGT 2 cut(s) 130, 698
Bst6I CTCTTC 2 cut(s) 92, 522
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 340, 399, 535, 888
BstF5I GGATG 2 cut(s) 118, 395
BstFNI CGCG 1 cut(s) 152
BstKTI GATC 4 cut(s) 7, 181, 487, 663
BstMAI GTCTC 2 cut(s) 328, 806
BstMBI GATC 4 cut(s) 4, 178, 484, 660
BstMCI CGRYCG 1 cut(s) 700
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 524, 842
BstPAI GACNNNNGTC 1 cut(s) 699
BstSCI CCNGG 2 cut(s) 522, 840
BstSFI CTRYAG 1 cut(s) 775
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 9, 274
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 1 cut(s) 682
BtsCI GGATG 2 cut(s) 118, 395
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 225, 335
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 680
Csp6I GTAC 2 cut(s) 15, 463
CviAII CATG 2 cut(s) 47, 658
CviJI RGCY 7 cut(s) 84, 265, 346, 364, 682, 835, 840
CviKI_1 RGCY 7 cut(s) 84, 265, 346, 364, 682, 835, 840
CviQI GTAC 2 cut(s) 15, 463
DdeI CTNAG 4 cut(s) 340, 399, 535, 888
DpnI GATC 4 cut(s) 6, 180, 486, 662
DpnII GATC 4 cut(s) 4, 178, 484, 660
DraI TTTAAA 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 92, 522
EarI CTCTTC 2 cut(s) 92, 522
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 522, 840
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 2 cut(s) 50, 661
FaqI GGGAC 2 cut(s) 266, 785
FatI CATG 2 cut(s) 46, 657
FauI CCCGC 2 cut(s) 157, 292
FbaI TGATCA 1 cut(s) 660
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 23, 288
FokI GGATG 2 cut(s) 125, 402
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 23, 288
FspBI CTAG 3 cut(s) 105, 117, 467
GluI GCNGC 2 cut(s) 23, 288
HaeIII GGCC 1 cut(s) 682
Hin1II CATG 2 cut(s) 50, 661
HinfI GANTC 4 cut(s) 154, 297, 602, 649
HphI GGTGA 2 cut(s) 149, 242
Hpy166II GTNNAC 3 cut(s) 205, 441, 497
Hpy188I TCNGA 2 cut(s) 9, 143
Hpy188III TCNNGA 1 cut(s) 793
Hpy8I GTNNAC 3 cut(s) 205, 441, 497
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 5 cut(s) 401, 709, 744, 761, 890
HpyCH4III ACNGT 2 cut(s) 130, 698
HpyCH4V TGCA 4 cut(s) 39, 80, 290, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 4 cut(s) 340, 399, 535, 888
Hsp92II CATG 2 cut(s) 50, 661
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 4 cut(s) 4, 178, 484, 660
LmnI GCTCC 2 cut(s) 351, 637
Lsp1109I GCAGC 2 cut(s) 9, 274
LweI GCATC 2 cut(s) 103, 855
MaeI CTAG 3 cut(s) 105, 117, 467
MaeIII GTNAC 2 cut(s) 392, 621
MalI GATC 4 cut(s) 6, 180, 486, 662
MboI GATC 4 cut(s) 4, 178, 484, 660
MboII GAAGA 5 cut(s) 109, 461, 464, 467, 509
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 6 cut(s) 55, 121, 429, 707, 729, 743
MlyI GAGTC 2 cut(s) 148, 658
MnlI CCTC 5 cut(s) 195, 380, 592, 623, 793
MseI TTAA 3 cut(s) 216, 272, 852
MslI CAYNNNNRTG 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 2 cut(s) 524, 842
MvaI CCWGG 2 cut(s) 524, 842
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 4 cut(s) 4, 178, 484, 660
NlaIII CATG 2 cut(s) 50, 661
PasI CCCWGGG 1 cut(s) 523
PfeI GAWTC 2 cut(s) 297, 602
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 2 cut(s) 24, 289
PleI GAGTC 2 cut(s) 148, 657
PpsI GAGTC 2 cut(s) 148, 657
PshAI GACNNNNGTC 1 cut(s) 699
PsiI TTATAA 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 522, 840
PspGI CCWGG 2 cut(s) 522, 840
PspPI GGNCC 1 cut(s) 680
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 2 cut(s) 16, 464
RsaNI GTAC 2 cut(s) 15, 463
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 216, 272, 852
SatI GCNGC 2 cut(s) 23, 288
Sau3AI GATC 4 cut(s) 4, 178, 484, 660
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 2 cut(s) 148, 658
ScrFI CCNGG 2 cut(s) 524, 842
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 187, 267, 348, 366, 405, 440, 468, 615, 901
SfaNI GCATC 2 cut(s) 103, 855
SfcI CTRYAG 1 cut(s) 775
SmiI ATTTAAAT 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 759
Sse9I AATT 6 cut(s) 55, 121, 429, 707, 729, 743
SsiI CCGC 2 cut(s) 150, 285
SspMI CTAG 3 cut(s) 105, 117, 467
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 522, 840
SwaI ATTTAAAT 1 cut(s) 273
TaaI ACNGT 2 cut(s) 130, 698
TaqI TCGA 1 cut(s) 125
TasI AATT 6 cut(s) 55, 121, 429, 707, 729, 743
TatI WGTACW 1 cut(s) 14
TfiI GAWTC 2 cut(s) 297, 602
Tru1I TTAA 3 cut(s) 216, 272, 852
Tru9I TTAA 3 cut(s) 216, 272, 852
TscAI CASTG 2 cut(s) 232, 335
TseI GCWGC 2 cut(s) 22, 287
TspDTI ATGAA 6 cut(s) 66, 186, 462, 608, 774, 780
TspRI CASTG 2 cut(s) 232, 335
Van91I CCANNNNNTGG 1 cut(s) 875
XapI RAATTY 4 cut(s) 55, 707, 729, 743
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 3 cut(s) 105, 117, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.