Rh5BG144400

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000620
Physical Location & Seq
Reverse (-)
14982641 .. 14983153
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG144400.1

Sequence Viewer

Length: 513 bp
ATGGGACGATATTTTACAACAACTCAGGAAGAAGGGGCCGCTCATGCGGTGGAAATTATTAGAGATGGACAAGATTTCAAGCTAGAAGTTCAATCTGTTGATATATGGAGTGAATGTTTCACCATTACCACTCTGCCCCGGGGAGCTTTCTTAGACTTGAAAAGAGTTGCAATTTTCCGTTGGAATTACTATGTAGCTGTTGCTGATATAGTAGAGGAATCCCTTAACGTCTTGGTGTTGGAAGACTTCAAGAAACACAAATGGAGGAAGATCATTGTTCCCTTGAAATTCTTGAAGGACAATCCAGGTTTAAAAGATGAGATTCGCCCTCATCAAGTTTGGTTAAATGACCTTCGGTTGCACAATGCAGTGAAAAAGAATATTCTCGTCTATGATATGGAAAGGAAGGTGATCAAGGTGATCAAGGTGACGCATACCAAGTCTACGGAGAAAATATATGAATTCCGAAAGCCAAGCCTGGTTACTCTCAAGGGAATGAAGAATGAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

170

Amino Acids

20.05

Weight (kDa)

9.32

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 443
AciI CCGC 2 cut(s) 39, 47
AcsI RAATTY 2 cut(s) 287, 461
AgsI TTSAA 6 cut(s) 79, 92, 160, 250, 286, 295
AjnI CCWGG 2 cut(s) 304, 477
AluBI AGCT 3 cut(s) 82, 146, 197
AluI AGCT 3 cut(s) 82, 146, 197
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 1 cut(s) 36
ApoI RAATTY 2 cut(s) 287, 461
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 2 cut(s) 139, 140
AsuHPI GGTGA 4 cut(s) 112, 421, 430, 439
AvaI CYCGRG 1 cut(s) 138
BarI GAAGNNNNNNTAC 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 249
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 306, 479
BclI TGATCA 2 cut(s) 411, 420
BcnI CCSGG 2 cut(s) 139, 140
BfaI CTAG 2 cut(s) 83, 511
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 4 cut(s) 139, 140, 306, 479
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 4 cut(s) 139, 140, 306, 479
BpiI GAAGAC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 139, 140
BsaJI CCNNGG 3 cut(s) 137, 138, 139
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
BseBI CCWGG 2 cut(s) 306, 479
BseDI CCNNGG 3 cut(s) 137, 138, 139
BseMII CTCAG 1 cut(s) 38
BshFI GGCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 138
Bsp143I GATC 3 cut(s) 270, 411, 420
BspACI CCGC 2 cut(s) 39, 47
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 137, 138, 139
BssMI GATC 3 cut(s) 270, 411, 420
Bst2UI CCWGG 2 cut(s) 306, 479
BstDEI CTNAG 2 cut(s) 24, 151
BstKTI GATC 3 cut(s) 273, 414, 423
BstMBI GATC 3 cut(s) 270, 411, 420
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 306, 479
BstSCI CCNGG 4 cut(s) 137, 138, 304, 477
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 36
Cfr9I CCCGGG 1 cut(s) 138
CseI GACGC 1 cut(s) 439
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 38, 82, 146, 197, 472, 477
CviKI_1 RGCY 6 cut(s) 38, 82, 146, 197, 472, 477
DdeI CTNAG 2 cut(s) 24, 151
DpnI GATC 3 cut(s) 272, 413, 422
DpnII GATC 3 cut(s) 270, 411, 420
DraI TTTAAA 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 304, 477
FaeI CATG 1 cut(s) 47
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 43
FbaI TGATCA 2 cut(s) 411, 420
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 83, 511
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 139
HgaI GACGC 1 cut(s) 439
Hin1II CATG 1 cut(s) 47
HinfI GANTC 2 cut(s) 218, 322
HpaII CCGG 1 cut(s) 139
HphI GGTGA 4 cut(s) 112, 421, 430, 439
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 1 cut(s) 467
Hpy188III TCNNGA 3 cut(s) 26, 250, 292
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 4 cut(s) 26, 289, 362, 400
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 170, 361, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 24, 151
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 1 cut(s) 47
Ksp22I TGATCA 2 cut(s) 411, 420
Kzo9I GATC 3 cut(s) 270, 411, 420
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 11, 152, 291, 318, 464, 491
MaeI CTAG 2 cut(s) 83, 511
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 427, 481
MalI GATC 3 cut(s) 272, 413, 422
MbiI CCGCTC 1 cut(s) 41
MboI GATC 3 cut(s) 270, 411, 420
MboII GAAGA 4 cut(s) 41, 254, 280, 511
MluCI AATT 5 cut(s) 54, 171, 184, 287, 461
MmeI TCCRAC 2 cut(s) 161, 219
MnlI CCTC 3 cut(s) 208, 258, 339
MseI TTAA 3 cut(s) 225, 311, 344
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 4 cut(s) 139, 140, 306, 479
MvaI CCWGG 2 cut(s) 306, 479
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 139, 140
NdeII GATC 3 cut(s) 270, 411, 420
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 427
PfeI GAWTC 2 cut(s) 218, 322
PkrI GCNGC 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 304, 477
PspGI CCWGG 2 cut(s) 304, 477
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 225, 311, 344
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 270, 411, 420
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 4 cut(s) 139, 140, 306, 479
SetI ASST 9 cut(s) 84, 148, 199, 231, 310, 354, 411, 420, 429
SmaI CCCGGG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 5 cut(s) 54, 171, 184, 287, 461
SsiI CCGC 2 cut(s) 39, 47
SspI AATATT 1 cut(s) 382
SspMI CTAG 2 cut(s) 83, 511
StyD4I CCNGG 4 cut(s) 137, 138, 304, 477
TaiI ACGT 1 cut(s) 231
TasI AATT 5 cut(s) 54, 171, 184, 287, 461
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 218, 322
Tru1I TTAA 3 cut(s) 225, 311, 344
Tru9I TTAA 3 cut(s) 225, 311, 344
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 474, 512
TspGWI ACGGA 2 cut(s) 167, 461
TspMI CCCGGG 1 cut(s) 138
TspRI CASTG 1 cut(s) 375
XapI RAATTY 2 cut(s) 287, 461
XmaI CCCGGG 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 2 cut(s) 83, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.