Rroxscaffold_1G00039650

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000620
Physical Location & Seq
Forward (+)
57300758 .. 57301819
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039650.1

Sequence Viewer

Length: 1062 bp
ATGGCGGATGGCAATAAAAGAGGGAAATTTGTCCCACACATTCCATTTGATTTGATATATGAGATCTTGACCTGGGTGTCGATTGAGCACTTACTCAGATTCCAATTTGTTTGCAAGGACTGGTATGCCTTGATTCGAAACCCCAAGTTCATAGAAAGGCAGTTTGAACGAGCTAGTAGCGTTCAAAAAATTAGTGATCTTATAAAAGAGGAAATCGATGGCATACTACAGCCTATTAATATCAACCAAAAATACAAGAAGTTTGCGAGTTGTTTTGGCTTGTTTTTAGAGATGAGTCTTACTAATGGTCGATCATGCCGCATCAGAAACCCGGTAACCCGCCAAGTAGTTTATTTGCCTCTTGCACACGAGGGTGCGAACCAATACGACTTTGCTCTCAATAAAGTCACTGGTGAGTGTAAAGTGGTATGTTACTATCATAATGGTAATTGTGAATCAGGGATTCAAGTCATAACTGTTGGAGATGAGCAGTGGAGGCTAATGAGACATCCAAACCAAGAGCTGTTAGAACAAGGCATACCTTTTGCCGATCATGGAGCGTATATTGGAGCAAACAATGGGATTGGATATTTTGCTGACTTGATTGAAGATGGAGAAGGTTATCTACTAGAAGTGCACACTTTGGAGAAGTGGAAGGAATGCATCATAATTACTTGCCGTGTACCACAAGAAGCTTTCGAAGACTTGTCTGAAGTTCTGTTTTGCCAATGGGATGGGCGTGTTGCTGTTGCGAAGATTGGAGACGAAGATATCAGTGTTTTAAGGTTGGAGGATGACATGGAGAATAGGTGGACTGAAAGAAAGATTGTGGTTCAGTTGGAAATTTTGAAGGATGAGCCGGATTTGGATGAGGAGATCATTAAGTTGCATGCTTGTTCTAATGAACTCACCATAGATGTCGCTGGTTCAAGAATTTACTATGATATGACAAAGCAGGTGGTTTTAGCCGAATATGACATGGAAAGCACAAATGAAGATGCAGCATTCACTTGGCTTAGGCCAAGCCTTATGGCTCTCAAGGGAATGAAACGAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

353

Amino Acids

40.79

Weight (kDa)

4.92

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 51 3.3e-08 F-box domain
FBA_3 PF08268 91 - 280 2e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AarI CACCTGC 1 cut(s) 946
AasI GACNNNNNNGTC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 946
AciI CCGC 3 cut(s) 5, 319, 340
AcsI RAATTY 3 cut(s) 26, 843, 933
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 1 cut(s) 684
AgsI TTSAA 6 cut(s) 167, 185, 467, 608, 850, 930
AjnI CCWGG 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 3 cut(s) 173, 523, 695
AluI AGCT 3 cut(s) 173, 523, 695
Alw21I GWGCWC 2 cut(s) 90, 639
Alw26I GTCTC 2 cut(s) 499, 756
Alw44I GTGCAC 1 cut(s) 635
AoxI GGCC 1 cut(s) 1019
ApaLI GTGCAC 1 cut(s) 635
ApeKI GCWGC 1 cut(s) 1001
ApoI RAATTY 3 cut(s) 26, 843, 933
AseI ATTAAT 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 425, 901
AsuII TTCGAA 2 cut(s) 136, 699
BaeGI GKGCMC 1 cut(s) 639
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 2 cut(s) 90, 639
BbvI GCAGC 1 cut(s) 1013
BccI CCATC 4 cut(s) 2, 212, 605, 728
BceAI ACGGC 1 cut(s) 663
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 499, 756
BfaI CTAG 2 cut(s) 174, 629
BfmI CTRYAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 946
BglII AGATCT 1 cut(s) 63
BisI GCNGC 2 cut(s) 319, 1002
BlsI GCNGC 2 cut(s) 320, 1003
Bme1390I CCNGG 2 cut(s) 73, 332
BmrFI CCNGG 2 cut(s) 73, 332
BmsI GCATC 3 cut(s) 330, 672, 988
BpiI GAAGAC 1 cut(s) 708
Bpu10I CCTNAGC 1 cut(s) 1016
Bpu14I TTCGAA 2 cut(s) 136, 699
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 1 cut(s) 332
Bsa29I ATCGAT 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bse1I ACTGG 2 cut(s) 125, 415
BseBI CCWGG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 6 cut(s) 13, 508, 739, 799, 859, 874
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 125, 415
BseRI GAGGAG 1 cut(s) 887
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 1 cut(s) 1013
BshFI GGCC 1 cut(s) 1021
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 90, 639
BsiSI CCGG 2 cut(s) 332, 860
BslFI GGGAC 1 cut(s) 17
BsmAI GTCTC 2 cut(s) 499, 756
BsmBI CGTCTC 1 cut(s) 756
BsmFI GGGAC 1 cut(s) 17
BsmI GAATGC 2 cut(s) 665, 1004
BsnI GGCC 1 cut(s) 1021
Bsp119I TTCGAA 2 cut(s) 136, 699
Bsp1286I GDGCHC 2 cut(s) 90, 639
Bsp143I GATC 5 cut(s) 63, 196, 311, 550, 876
BspACI CCGC 3 cut(s) 5, 319, 340
BspANI GGCC 1 cut(s) 1021
BspCNI CTCAG 1 cut(s) 108
BspDI ATCGAT 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 946
BspT104I TTCGAA 2 cut(s) 136, 699
BsrI ACTGG 2 cut(s) 125, 415
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 5 cut(s) 63, 196, 311, 550, 876
BssSI CACGAG 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 478
BstBI TTCGAA 2 cut(s) 136, 699
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 2 cut(s) 95, 1016
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 6 cut(s) 13, 508, 739, 799, 859, 874
BstKTI GATC 5 cut(s) 66, 199, 314, 553, 879
BstMAI GTCTC 2 cut(s) 499, 756
BstMBI GATC 5 cut(s) 63, 196, 311, 550, 876
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 893
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 71, 330
BstSFI CTRYAG 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 639
BstV1I GCAGC 1 cut(s) 1013
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 1 cut(s) 1021
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 6 cut(s) 13, 508, 739, 799, 859, 874
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 3 cut(s) 408, 497, 781
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 1 cut(s) 891
ClaI ATCGAT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 683
CspCI CAANNNNNGTGG 2 cut(s) 939, 974
CviAII CATG 5 cut(s) 315, 554, 799, 890, 979
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 2 cut(s) 95, 1016
DpnI GATC 5 cut(s) 65, 198, 313, 552, 878
DpnII GATC 5 cut(s) 63, 196, 311, 550, 876
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 772
EcoT22I ATGCAT 1 cut(s) 665
Esp3I CGTCTC 1 cut(s) 756
FaeI CATG 5 cut(s) 318, 557, 802, 893, 982
FaqI GGGAC 1 cut(s) 17
FatI CATG 5 cut(s) 314, 553, 798, 889, 978
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 2 cut(s) 319, 1002
FokI GGATG 6 cut(s) 20, 495, 746, 806, 866, 881
Fsp4HI GCNGC 2 cut(s) 319, 1002
FspBI CTAG 2 cut(s) 174, 629
GluI GCNGC 2 cut(s) 319, 1002
HaeIII GGCC 1 cut(s) 1021
HapII CCGG 2 cut(s) 332, 860
Hin1II CATG 5 cut(s) 318, 557, 802, 893, 982
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 5 cut(s) 99, 133, 295, 455, 463
HpaII CCGG 2 cut(s) 332, 860
HphI GGTGA 2 cut(s) 425, 901
Hpy166II GTNNAC 3 cut(s) 637, 683, 813
Hpy188I TCNGA 3 cut(s) 98, 326, 712
Hpy188III TCNNGA 2 cut(s) 67, 930
Hpy8I GTNNAC 3 cut(s) 637, 683, 813
HpyAV CCTTC 3 cut(s) 611, 649, 844
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 6 cut(s) 114, 365, 637, 663, 889, 1001
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpyF3I CTNAG 2 cut(s) 95, 1016
Hsp92II CATG 5 cut(s) 318, 557, 802, 893, 982
Kzo9I GATC 5 cut(s) 63, 196, 311, 550, 876
LmnI GCTCC 2 cut(s) 557, 569
LpnPI CCDG 9 cut(s) 58, 85, 106, 345, 396, 444, 873, 909, 941
Lsp1109I GCAGC 1 cut(s) 1013
LweI GCATC 3 cut(s) 330, 672, 988
MaeI CTAG 2 cut(s) 174, 629
MaeIII GTNAC 3 cut(s) 334, 406, 431
MalI GATC 5 cut(s) 65, 198, 313, 552, 878
MboI GATC 5 cut(s) 63, 196, 311, 550, 876
MboII GAAGA 5 cut(s) 620, 713, 766, 779, 1007
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 90, 639
MluCI AATT 7 cut(s) 26, 104, 189, 448, 669, 843, 933
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 3 cut(s) 460, 768, 819
MnlI CCTC 7 cut(s) 14, 202, 364, 369, 489, 784, 865
Mph1103I ATGCAT 1 cut(s) 665
MseI TTAA 3 cut(s) 237, 782, 882
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 2 cut(s) 332, 860
MspR9I CCNGG 2 cut(s) 73, 332
Mva1269I GAATGC 2 cut(s) 665, 1004
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 496
NciI CCSGG 1 cut(s) 332
NdeII GATC 5 cut(s) 63, 196, 311, 550, 876
NlaIII CATG 5 cut(s) 318, 557, 802, 893, 982
NmuCI GTSAC 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 1 cut(s) 893
NspV TTCGAA 2 cut(s) 136, 699
OliI CACNNNNGTG 1 cut(s) 372
PaeI GCATGC 1 cut(s) 893
PaqCI CACCTGC 1 cut(s) 946
PctI GAATGC 2 cut(s) 665, 1004
PfeI GAWTC 4 cut(s) 99, 133, 455, 463
PkrI GCNGC 2 cut(s) 320, 1003
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 71
PspEI GGTNACC 1 cut(s) 334
PspGI CCWGG 1 cut(s) 71
PsrI GAACNNNNNNTAC 2 cut(s) 522, 554
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 3 cut(s) 237, 782, 882
SatI GCNGC 2 cut(s) 319, 1002
Sau3AI GATC 5 cut(s) 63, 196, 311, 550, 876
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 73, 332
SduI GDGCHC 2 cut(s) 90, 639
SetI ASST 9 cut(s) 74, 175, 525, 544, 622, 697, 788, 812, 960
SfaNI GCATC 3 cut(s) 330, 672, 988
SfcI CTRYAG 1 cut(s) 227
SfuI TTCGAA 2 cut(s) 136, 699
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SphI GCATGC 1 cut(s) 893
Sse9I AATT 7 cut(s) 26, 104, 189, 448, 669, 843, 933
SsiI CCGC 3 cut(s) 5, 319, 340
SspMI CTAG 2 cut(s) 174, 629
StyD4I CCNGG 2 cut(s) 71, 330
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 5 cut(s) 80, 136, 216, 310, 699
TasI AATT 7 cut(s) 26, 104, 189, 448, 669, 843, 933
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 4 cut(s) 99, 133, 455, 463
Tru1I TTAA 3 cut(s) 237, 782, 882
Tru9I TTAA 3 cut(s) 237, 782, 882
TscAI CASTG 3 cut(s) 415, 497, 781
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 1001
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 4 cut(s) 139, 918, 1008, 1061
TspRI CASTG 3 cut(s) 415, 497, 781
VneI GTGCAC 1 cut(s) 635
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 3 cut(s) 26, 843, 933
XceI RCATGY 1 cut(s) 893
XspI CTAG 2 cut(s) 174, 629
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.