Prupe.4G219900_v2.0.a1

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000620
Physical Location & Seq
Forward (+)
13815610 .. 13816743
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G219900.1

Sequence Viewer

Length: 1134 bp
ATGGTGGAAGGGAGAGTGGATCCCATAAAAGTACCAAAGCTTCCTTTTGATATTATCAGTGAGATTTTGAGCTGGTTGCCTGTCCAGTCTTTGCTAAGATTCAGGTGCGTGTGCAAGCAATGGTGTTTGTTGTTGACTCAAGACCACCAGTTTATTGCCAAACATAGCGGCCGAGCCAGTCGTCTGCTACTTCCACGTATGTCAGGCCCAGGAAAAATTCTTTATGACGAAAACTTCAAGTTTCTTTACCATTTGTCCGGAGGCTTGTTAATGGAGATGAGCCTAAAAAATTCTCGAGTCTACAGAATCAGAAATCCTGTAACCCATCAAGTGCTTTACTTGCCTGATGCGCCTGAAGGCACGGATGAAATCGACATTGCATTTAATTCATTCACTCGTGAGTGTAAAGTGGTATGTGTTCATGGTGAAGACGGAGAAGAGGTCGGTTTTGAAGTTCTAACAGTTGGAAAGGATGAGCAATGGAGACCCCTCAAACACCCAAACCAAGACTTACTAAAGCAACATGGCAAGCAGGCGCTGAAACAAAAATATTGGCCAGCAGCTTACAAGGCTGAAGGGCTTGGCCATTTCACTCAACTTATTTCAGACGGGAAAGATTTGTACATGGAAATTCAATCTCTTGAGATCTGGAGTGAACGTTTCACTACTAATACTGTGCCCCGGGGATTTTTTGCAGACTTGAATGAAGTTTCGGTTTTAACTTGGAATCACTGTCTAGCTGTTCGCAATATAACAGAGGAGAACCTTAATGTCTTGGTGTTAGAGGACTTCAAGGAGCACAAATGGAGTCAAAACAAGATCATCGTTCCGTTGACATTTTTAAAGGACCGCCCGGAATGGAAGGACAAAATTGTTCATGCCATTGGCATACCTAAGTCTGGTGTACTGCAATTGGCTATTAATCATGTTTACCGAGACGGTATTACTAAAACAATAATAGTTATTGACTATGATATGAGTAGCCAGACAGTAATACATGAGCGCAAACCTCCACCGCCCTTTCCATTGCCTGAAACTTGTTGGCATGATCCAAGCCTGATAGCTCTTAAAGGAATGAAATCAGAGAAGGCTGGCTTTTCTCCTGGTGATGGCTTTTTAATCTGCTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

378

Amino Acids

43.27

Weight (kDa)

6.92

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 3 cut(s) 168, 850, 1016
AclI AACGTT 1 cut(s) 658
AclWI GGATC 3 cut(s) 14, 27, 1043
AcoI YGGCCR 3 cut(s) 169, 554, 583
AcsI RAATTY 3 cut(s) 216, 289, 630
AcuI CTGAAG 2 cut(s) 375, 594
AfaI GTAC 3 cut(s) 33, 623, 906
AfiI CCNNNNNNNGG 2 cut(s) 899, 1109
AgsI TTSAA 5 cut(s) 238, 452, 635, 703, 793
AjnI CCWGG 2 cut(s) 208, 1102
AluBI AGCT 5 cut(s) 40, 72, 563, 740, 1064
AluI AGCT 5 cut(s) 40, 72, 563, 740, 1064
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 2 cut(s) 478, 930
AlwI GGATC 3 cut(s) 14, 27, 1043
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 2 cut(s) 294, 681
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 4 cut(s) 169, 205, 554, 583
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 3 cut(s) 216, 289, 630
AseI ATTAAT 1 cut(s) 921
AspLEI GCGC 3 cut(s) 352, 538, 1005
AspS9I GGNCC 2 cut(s) 206, 847
AsuC2I CCSGG 3 cut(s) 682, 683, 854
AsuHPI GGTGA 2 cut(s) 437, 1118
AvaI CYCGRG 2 cut(s) 294, 681
AvaII GGWCC 1 cut(s) 847
BaeGI GKGCMC 1 cut(s) 681
BalI TGGCCA 2 cut(s) 556, 585
BamHI GGATCC 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 333, 1103
BciT130I CCWGG 2 cut(s) 210, 1104
BcnI CCSGG 3 cut(s) 682, 683, 854
BcoDI GTCTC 2 cut(s) 478, 930
BfaI CTAG 2 cut(s) 737, 1132
BfmI CTRYAG 1 cut(s) 301
BfoI RGCGCY 1 cut(s) 539
BglII AGATCT 1 cut(s) 645
BisI GCNGC 2 cut(s) 169, 561
BlsI GCNGC 2 cut(s) 170, 562
Bme1390I CCNGG 5 cut(s) 210, 682, 683, 854, 1104
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 2 cut(s) 294, 681
BmgT120I GGNCC 2 cut(s) 206, 847
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 5 cut(s) 210, 682, 683, 854, 1104
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 670
BpuEI CTTGAG 2 cut(s) 123, 662
BpuMI CCSGG 3 cut(s) 682, 683, 854
BsaAI YACGTR 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 4 cut(s) 208, 680, 681, 682
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 643, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 899, 1109
Bse1I ACTGG 3 cut(s) 85, 148, 177
Bse3DI GCAATG 4 cut(s) 125, 375, 485, 1025
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 2 cut(s) 210, 1104
BseDI CCNNGG 4 cut(s) 208, 680, 681, 682
BseGI GGATG 2 cut(s) 370, 478
BseLI CCNNNNNNNGG 2 cut(s) 899, 1109
BseMI GCAATG 4 cut(s) 125, 375, 485, 1025
BseNI ACTGG 3 cut(s) 85, 148, 177
BseRI GAGGAG 1 cut(s) 773
BseSI GKGCMC 1 cut(s) 681
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 572
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 171, 207, 556, 585
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 801
BsiHKCI CYCGRG 2 cut(s) 294, 681
BsiSI CCGG 3 cut(s) 258, 682, 854
BslI CCNNNNNNNGG 2 cut(s) 899, 1109
BsmAI GTCTC 2 cut(s) 478, 930
BsmBI CGTCTC 1 cut(s) 930
BsnI GGCC 4 cut(s) 171, 207, 556, 585
Bso31I GGTCTC 1 cut(s) 478
BsoBI CYCGRG 2 cut(s) 294, 681
Bsp1286I GDGCHC 2 cut(s) 681, 801
Bsp13I TCCGGA 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 4 cut(s) 19, 645, 819, 1048
BspACI CCGC 3 cut(s) 168, 850, 1016
BspANI GGCC 4 cut(s) 171, 207, 556, 585
BspEI TCCGGA 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 3 cut(s) 14, 27, 1043
BspTNI GGTCTC 1 cut(s) 478
BsrDI GCAATG 4 cut(s) 125, 375, 485, 1025
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 3 cut(s) 85, 148, 177
BssECI CCNNGG 4 cut(s) 208, 680, 681, 682
BssMI GATC 4 cut(s) 19, 645, 819, 1048
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 210, 1104
Bst4CI ACNGT 5 cut(s) 463, 676, 734, 941, 991
Bst6I CTCTTC 1 cut(s) 432
BstAUI TGTACA 1 cut(s) 621
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 5 cut(s) 116, 530, 534, 558, 1093
BstDEI CTNAG 2 cut(s) 95, 894
BstF5I GGATG 2 cut(s) 370, 478
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 3 cut(s) 352, 538, 1005
BstKTI GATC 4 cut(s) 22, 648, 822, 1051
BstMAI GTCTC 2 cut(s) 478, 930
BstMBI GATC 4 cut(s) 19, 645, 819, 1048
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 340, 349, 569
BstNI CCWGG 2 cut(s) 210, 1104
BstSCI CCNGG 5 cut(s) 208, 680, 681, 852, 1102
BstSFI CTRYAG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 681
BstV1I GCAGC 1 cut(s) 572
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 2 cut(s) 19, 645
BstYI RGATCY 2 cut(s) 19, 645
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 4 cut(s) 171, 207, 556, 585
BtsCI GGATG 2 cut(s) 370, 478
BtsIMutI CAGTG 2 cut(s) 64, 730
Cac8I GCNNGC 5 cut(s) 116, 530, 534, 558, 1093
CaiI CAGNNNCTG 1 cut(s) 538
CfoI GCGC 3 cut(s) 352, 538, 1005
Cfr13I GGNCC 2 cut(s) 206, 847
Cfr9I CCCGGG 1 cut(s) 681
Csp6I GTAC 3 cut(s) 32, 622, 905
CviAII CATG 7 cut(s) 422, 524, 625, 878, 926, 998, 1046
CviQI GTAC 3 cut(s) 32, 622, 905
DdeI CTNAG 2 cut(s) 95, 894
DpnI GATC 4 cut(s) 21, 647, 821, 1050
DpnII GATC 4 cut(s) 19, 645, 819, 1048
DraI TTTAAA 1 cut(s) 843
EaeI YGGCCR 3 cut(s) 169, 554, 583
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EclXI CGGCCG 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 847
Eco52I CGGCCG 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 375, 594
Eco88I CYCGRG 2 cut(s) 294, 681
EcoRII CCWGG 2 cut(s) 208, 1102
Esp3I CGTCTC 1 cut(s) 930
FaeI CATG 7 cut(s) 425, 527, 628, 881, 929, 1001, 1049
FalI AAGNNNNNCTT 2 cut(s) 1079, 1111
FatI CATG 7 cut(s) 421, 523, 624, 877, 925, 997, 1045
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 169, 561
FokI GGATG 2 cut(s) 377, 485
Fsp4HI GCNGC 2 cut(s) 169, 561
FspBI CTAG 2 cut(s) 737, 1132
GlaI GCGC 3 cut(s) 351, 537, 1004
GluI GCNGC 2 cut(s) 169, 561
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 4 cut(s) 171, 207, 556, 585
HapII CCGG 3 cut(s) 258, 682, 854
HhaI GCGC 3 cut(s) 352, 538, 1005
Hin1II CATG 7 cut(s) 425, 527, 628, 881, 929, 1001, 1049
Hin6I GCGC 3 cut(s) 350, 536, 1003
HinP1I GCGC 3 cut(s) 350, 536, 1003
HincII GTYRAC 2 cut(s) 135, 834
HindII GTYRAC 2 cut(s) 135, 834
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 6 cut(s) 99, 136, 297, 306, 727, 808
HpaII CCGG 3 cut(s) 258, 682, 854
HphI GGTGA 2 cut(s) 437, 1118
Hpy166II GTNNAC 6 cut(s) 135, 301, 656, 834, 905, 931
Hpy188I TCNGA 3 cut(s) 311, 607, 1084
Hpy188III TCNNGA 6 cut(s) 140, 258, 294, 398, 641, 649
Hpy8I GTNNAC 6 cut(s) 135, 301, 656, 834, 905, 931
HpyAV CCTTC 4 cut(s) 350, 569, 856, 1081
HpyCH4III ACNGT 5 cut(s) 463, 676, 734, 941, 991
HpyCH4IV ACGT 2 cut(s) 196, 658
HpyCH4V TGCA 4 cut(s) 114, 380, 695, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 340, 349, 569
HpyF3I CTNAG 2 cut(s) 95, 894
HpySE526I ACGT 2 cut(s) 196, 658
Hsp92II CATG 7 cut(s) 425, 527, 628, 881, 929, 1001, 1049
HspAI GCGC 3 cut(s) 350, 536, 1003
Kpn2I TCCGGA 1 cut(s) 257
Kzo9I GATC 4 cut(s) 19, 645, 819, 1048
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 737, 1132
MaeII ACGT 2 cut(s) 196, 658
MaeIII GTNAC 1 cut(s) 319
MalI GATC 4 cut(s) 21, 647, 821, 1050
MboI GATC 4 cut(s) 19, 645, 819, 1048
MboII GAAGA 2 cut(s) 440, 449
MfeI CAATTG 1 cut(s) 911
MflI RGATCY 2 cut(s) 19, 645
MhlI GDGCHC 2 cut(s) 681, 801
MlsI TGGCCA 2 cut(s) 556, 585
MluCI AATT 6 cut(s) 216, 289, 385, 630, 870, 911
MluNI TGGCCA 2 cut(s) 556, 585
MlyI GAGTC 3 cut(s) 130, 306, 817
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 6 cut(s) 254, 433, 500, 751, 778, 1020
Mox20I TGGCCA 2 cut(s) 556, 585
MroI TCCGGA 1 cut(s) 257
MscI TGGCCA 2 cut(s) 556, 585
MseI TTAA 8 cut(s) 269, 384, 719, 768, 842, 921, 1068, 1118
Msp20I TGGCCA 2 cut(s) 556, 585
MspI CCGG 3 cut(s) 258, 682, 854
MspR9I CCNGG 5 cut(s) 210, 682, 683, 854, 1104
MunI CAATTG 1 cut(s) 911
MvaI CCWGG 2 cut(s) 210, 1104
MwoI GCNNNNNNNGC 3 cut(s) 340, 349, 569
NciI CCSGG 3 cut(s) 682, 683, 854
NdeII GATC 4 cut(s) 19, 645, 819, 1048
NlaIII CATG 7 cut(s) 425, 527, 628, 881, 929, 1001, 1049
NlaIV GGNNCC 1 cut(s) 21
NmeAIII GCCGAG 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 294
PfeI GAWTC 3 cut(s) 99, 306, 727
PkrI GCNGC 2 cut(s) 170, 562
PleI GAGTC 3 cut(s) 130, 305, 816
PpsI GAGTC 3 cut(s) 130, 305, 816
Ppu21I YACGTR 1 cut(s) 197
PshBI ATTAAT 1 cut(s) 921
Psp1406I AACGTT 1 cut(s) 658
Psp6I CCWGG 2 cut(s) 208, 1102
PspGI CCWGG 2 cut(s) 208, 1102
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 206, 847
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 2 cut(s) 19, 645
RsaI GTAC 3 cut(s) 33, 623, 906
RsaNI GTAC 3 cut(s) 32, 622, 905
SaqAI TTAA 8 cut(s) 269, 384, 719, 768, 842, 921, 1068, 1118
SatI GCNGC 2 cut(s) 169, 561
Sau3AI GATC 4 cut(s) 19, 645, 819, 1048
Sau96I GGNCC 2 cut(s) 206, 847
SchI GAGTC 3 cut(s) 130, 306, 817
ScrFI CCNGG 5 cut(s) 210, 682, 683, 854, 1104
SduI GDGCHC 2 cut(s) 681, 801
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 301
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 294
SmaI CCCGGG 1 cut(s) 683
SmlI CTYRAG 3 cut(s) 138, 294, 641
SmoI CTYRAG 3 cut(s) 138, 294, 641
Sse9I AATT 6 cut(s) 216, 289, 385, 630, 870, 911
SsiI CCGC 3 cut(s) 168, 850, 1016
SspI AATATT 1 cut(s) 551
SspMI CTAG 2 cut(s) 737, 1132
StyD4I CCNGG 5 cut(s) 208, 680, 681, 852, 1102
TaaI ACNGT 5 cut(s) 463, 676, 734, 941, 991
TaiI ACGT 2 cut(s) 199, 661
TaqI TCGA 2 cut(s) 295, 372
TasI AATT 6 cut(s) 216, 289, 385, 630, 870, 911
TatI WGTACW 2 cut(s) 621, 904
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 3 cut(s) 99, 306, 727
Tru1I TTAA 8 cut(s) 269, 384, 719, 768, 842, 921, 1068, 1118
Tru9I TTAA 8 cut(s) 269, 384, 719, 768, 842, 921, 1068, 1118
TscAI CASTG 2 cut(s) 64, 737
TseI GCWGC 1 cut(s) 560
TspDTI ATGAA 6 cut(s) 378, 381, 410, 720, 866, 1091
TspGWI ACGGA 3 cut(s) 377, 447, 819
TspMI CCCGGG 1 cut(s) 681
TspRI CASTG 2 cut(s) 64, 737
VpaK11BI GGWCC 1 cut(s) 847
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 3 cut(s) 216, 289, 630
XhoI CTCGAG 1 cut(s) 294
XmaI CCCGGG 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 2 cut(s) 737, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.