FvH4_6g21740

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000620
Physical Location & Seq
Reverse (-)
15251742 .. 15253650
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21740.t1

Sequence Viewer

Length: 849 bp
ATGATGTCTTGCAACCAGATAAATACAAGAAGATTAGCATCAGTTCCCTTTGATTCCATTGTCGAGATTTTGAGTTGGCTGCCAGTCGAGTCTTTGCTAAGGTTCAAGTGCGTTTGCAAGCAATGGTGTTCCTTGATTCAAGATTACAATTTCATTCTCAGAAATATGGATCGGACTAGTACAATGCTGCTTGTTTATCCTTGCACATCCCATGATGACAATTTTGAGTTTGTTTCAAGTTGTGCAGGCTTGTGTATGGAGAAGAGTACTGCTAGTAATTCGACAATTTTTCTTATCAGAAACCCTGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTGCATCAGTAGACTTCGCCTTTAACTTATCTACTGGTGAGTGTAAAGTTATATGTTTTTATTGCGAAAAGCCTTTTATAAATGTCGATGCTGCATTTGGATTTAAAGTTATAACCATTGGAAAAGATGAGCAATGGAGATCCTTAGAGCTCCCCGACGGAAATAAGCTTCGTAAAAAGGCGGTGTTTAGAGGATATTATACCAGAGTAAATGAGGTTGAAGGAAATTGTCATCTGGTCCAAATTATTAGGTTTACTGATGAAGAAGAAGACATGTACCGAGAAGTTCAAACTCTAGATATATGGAGTGAGCATTTTACAACGAATACTCTGCCAGAGGGAGTTTCCCTAAACTGGAAAGAAGTTCATGTTGTTCGCTGGAATAACTGCTTATCAGTCGGTTATACGAAAGAGGAATCCCTTGACCTCTGGGTGTTACAAGATTATAAGGAGCAAAAATGGAGTCCAAACAAGATCATCATTCCCGTGAAAGGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

283

Amino Acids

32.69

Weight (kDa)

5.48

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 14 - 49 6.3e-07 F-box-like
F-box PF00646 15 - 51 3.4e-09 F-box domain
FBA_3 PF08268 68 - 278 3.6e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 428, 461, 795
AccI GTMKAC 1 cut(s) 360
AciI CCGC 1 cut(s) 530
AclWI GGATC 3 cut(s) 177, 329, 483
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 3 cut(s) 181, 268, 626
AfiI CCNNNNNNNGG 3 cut(s) 702, 839, 840
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 5 cut(s) 106, 140, 237, 569, 638
AhlI ACTAGT 1 cut(s) 176
AluBI AGCT 2 cut(s) 499, 517
AluI AGCT 2 cut(s) 499, 517
Alw21I GWGCWC 1 cut(s) 501
AlwI GGATC 3 cut(s) 177, 329, 483
AoxI GGCC 1 cut(s) 842
ApeKI GCWGC 3 cut(s) 79, 187, 440
ArsI GACNNNNNNTTYG 2 cut(s) 796, 828
AspS9I GGNCC 2 cut(s) 586, 842
AsuHPI GGTGA 2 cut(s) 305, 398
AvaII GGWCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 66, 174, 427
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 177, 273, 644
BisI GCNGC 3 cut(s) 80, 188, 441
BlsI GCNGC 3 cut(s) 81, 189, 442
BmcAI AGTACT 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 586, 842
BmsI GCATC 3 cut(s) 47, 362, 427
BpiI GAAGAC 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 37
Bsc4I CCNNNNNNNGG 3 cut(s) 702, 839, 840
Bse1I ACTGG 3 cut(s) 83, 388, 707
Bse3DI GCAATG 2 cut(s) 128, 488
Bse8I GATNNNNATC 1 cut(s) 37
BseGI GGATG 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 37
BseLI CCNNNNNNNGG 3 cut(s) 702, 839, 840
BseMI GCAATG 2 cut(s) 128, 488
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 3 cut(s) 83, 388, 707
BseXI GCAGC 3 cut(s) 66, 174, 427
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 1 cut(s) 844
BsiHKAI GWGCWC 1 cut(s) 501
BslI CCNNNNNNNGG 3 cut(s) 702, 839, 840
BsnI GGCC 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 4 cut(s) 169, 334, 488, 822
BspACI CCGC 1 cut(s) 530
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 1 cut(s) 171
BspPI GGATC 3 cut(s) 177, 329, 483
BsrDI GCAATG 2 cut(s) 128, 488
BsrI ACTGG 3 cut(s) 83, 388, 707
BssMI GATC 4 cut(s) 169, 334, 488, 822
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 119, 247
BstDEI CTNAG 3 cut(s) 98, 158, 493
BstF5I GGATG 1 cut(s) 206
BstKTI GATC 4 cut(s) 172, 337, 491, 825
BstMBI GATC 4 cut(s) 169, 334, 488, 822
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 66, 174, 427
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 1 cut(s) 844
BtsCI GGATG 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 119, 247
Cfr13I GGNCC 2 cut(s) 586, 842
Csp6I GTAC 3 cut(s) 180, 267, 625
CviAII CATG 3 cut(s) 212, 622, 716
CviJI RGCY 6 cut(s) 79, 249, 421, 499, 517, 844
CviKI_1 RGCY 6 cut(s) 79, 249, 421, 499, 517, 844
CviQI GTAC 3 cut(s) 180, 267, 625
DdeI CTNAG 3 cut(s) 98, 158, 493
DpnI GATC 4 cut(s) 171, 336, 490, 824
DpnII GATC 4 cut(s) 169, 334, 488, 822
DraI TTTAAA 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 586
Eco53kI GAGCTC 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 3 cut(s) 215, 625, 719
FatI CATG 3 cut(s) 211, 621, 715
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 3 cut(s) 80, 188, 441
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 80, 188, 441
FspBI CTAG 3 cut(s) 177, 273, 644
GluI GCNGC 3 cut(s) 80, 188, 441
HaeIII GGCC 1 cut(s) 844
Hin1II CATG 3 cut(s) 215, 625, 719
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 6 cut(s) 53, 89, 136, 310, 764, 811
HphI GGTGA 2 cut(s) 305, 398
Hpy166II GTNNAC 2 cut(s) 361, 603
Hpy188I TCNGA 3 cut(s) 161, 174, 299
Hpy188III TCNNGA 3 cut(s) 64, 140, 644
Hpy8I GTNNAC 2 cut(s) 361, 603
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 563
HpyCH4V TGCA 6 cut(s) 12, 117, 204, 245, 353, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 3 cut(s) 98, 158, 493
Hsp92II CATG 3 cut(s) 215, 625, 719
Kzo9I GATC 4 cut(s) 169, 334, 488, 822
LmnI GCTCC 2 cut(s) 504, 799
Lsp1109I GCAGC 3 cut(s) 66, 174, 427
LweI GCATC 3 cut(s) 47, 362, 427
MaeI CTAG 3 cut(s) 177, 273, 644
MaeIII GTNAC 1 cut(s) 783
MalI GATC 4 cut(s) 171, 336, 490, 824
MboI GATC 4 cut(s) 169, 334, 488, 822
MboII GAAGA 5 cut(s) 42, 274, 623, 626, 629
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 6 cut(s) 148, 220, 277, 285, 574, 591
MlyI GAGTC 3 cut(s) 98, 304, 820
MnlI CCTC 6 cut(s) 351, 533, 556, 679, 754, 785
MseI TTAA 2 cut(s) 372, 453
MslI CAYNNNNRTG 1 cut(s) 833
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeII GATC 4 cut(s) 169, 334, 488, 822
NlaIII CATG 3 cut(s) 215, 625, 719
NspI RCATGY 1 cut(s) 625
PciI ACATGT 1 cut(s) 621
PfeI GAWTC 3 cut(s) 53, 136, 764
PkrI GCNGC 3 cut(s) 81, 189, 442
PleI GAGTC 3 cut(s) 97, 304, 819
PpsI GAGTC 3 cut(s) 97, 304, 819
PscI ACATGT 1 cut(s) 621
PsiI TTATAA 3 cut(s) 428, 461, 795
Psp124BI GAGCTC 1 cut(s) 501
PspPI GGNCC 2 cut(s) 586, 842
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 3 cut(s) 181, 268, 626
RsaNI GTAC 3 cut(s) 180, 267, 625
RseI CAYNNNNRTG 1 cut(s) 833
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 372, 453
SatI GCNGC 3 cut(s) 80, 188, 441
Sau3AI GATC 4 cut(s) 169, 334, 488, 822
Sau96I GGNCC 2 cut(s) 586, 842
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 3 cut(s) 98, 304, 820
SduI GDGCHC 1 cut(s) 501
SetI ASST 7 cut(s) 104, 343, 501, 519, 567, 602, 777
SfaNI GCATC 3 cut(s) 47, 362, 427
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 833
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 6 cut(s) 148, 220, 277, 285, 574, 591
SsiI CCGC 1 cut(s) 530
SspMI CTAG 3 cut(s) 177, 273, 644
SstI GAGCTC 1 cut(s) 501
TaqI TCGA 4 cut(s) 63, 87, 281, 435
TasI AATT 6 cut(s) 148, 220, 277, 285, 574, 591
TatI WGTACW 2 cut(s) 179, 266
TfiI GAWTC 3 cut(s) 53, 136, 764
Tru1I TTAA 2 cut(s) 372, 453
Tru9I TTAA 2 cut(s) 372, 453
TseI GCWGC 3 cut(s) 79, 187, 440
TspDTI ATGAA 3 cut(s) 142, 624, 704
TspGWI ACGGA 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 3 cut(s) 177, 273, 644
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.