Rmu_sc0005207.1_g000008

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005207.1
OG0000620
Physical Location & Seq
Forward (+)
22764 .. 23861
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005207.1_g000008.1.cds

Sequence Viewer

Length: 885 bp
atgcatatttcggtatctgatgcagtacgagcgcttccttttgatatcatcactgagattttgagctggttgcctgtagattctttgctaaggttcaagtgtgtgtgcaaaaaatggcgttccttgcttctagactacaatttcattgcaaaacatatggttcgggcgagacctctgcaactttcctataaaaaagaatggaacccttaccaatatgatacggttctttatgatgaaaacttcaaacaaatttcagatgtggctggcttgcttctggaggagagtcttacttctcgagttttccgaatcagaaactttgcaacgcatcaagtactttacttgcctgatgcacacgggaaatctaggtcagtgggttttgtttttgattcatccactggtgagtgtaaagccgcatgttttcattggaaacaggagggtgactctggctttgaagtagcctttgaagttctaagtatcggaaaggatgatcgatggaggactctgaaactgcccaagcaaaatggcgaaccgtacgtgggacgatattttacagcagctaaggaagaaggggccgctcatctggtggaaattattagagatggacaagatttcaagctagaagttcaatctcttgatatatggagtgaacgtttcaccattgccactctgccccggggagctttcttagacttgaaaagagttacaatttttctttggaattactatgtagctgttgctgatatagtagaggaatcccttaacgtcttggtgttggaagacttcaaggaaaacaaatggaggaagatcattgttcccttgaaattcttgaaggacaatccaggtgatcaaggcgacgcataccaagtctgtggagaaaatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

294

Amino Acids

34.0

Weight (kDa)

6.12

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 575
AciI CCGC 2 cut(s) 411, 573
AclI AACGTT 1 cut(s) 649
AcsI RAATTY 2 cut(s) 249, 821
AfaI GTAC 3 cut(s) 27, 333, 533
AfeI AGCGCT 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 536
AjnI CCWGG 1 cut(s) 838
AluBI AGCT 5 cut(s) 66, 557, 616, 680, 731
AluI AGCT 5 cut(s) 66, 557, 616, 680, 731
Alw26I GTCTC 1 cut(s) 163
Ama87I CYCGRG 2 cut(s) 294, 672
Aor51HI AGCGCT 1 cut(s) 33
AoxI GGCC 1 cut(s) 570
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 2 cut(s) 249, 821
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 2 cut(s) 673, 674
AsuHPI GGTGA 4 cut(s) 410, 449, 646, 854
AvaI CYCGRG 2 cut(s) 294, 672
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbsI GAAGAC 1 cut(s) 783
BbvI GCAGC 1 cut(s) 566
BccI CCATC 2 cut(s) 486, 593
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 840
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 2 cut(s) 673, 674
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 3 cut(s) 131, 363, 617
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 3 cut(s) 411, 555, 573
BlsI GCNGC 3 cut(s) 412, 556, 574
BmcAI AGTACT 1 cut(s) 333
Bme1390I CCNGG 3 cut(s) 673, 674, 840
BmeT110I CYCGRG 2 cut(s) 294, 672
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 2 cut(s) 203, 571
BmrFI CCNGG 3 cut(s) 673, 674, 840
BmsI GCATC 3 cut(s) 10, 334, 337
BpiI GAAGAC 1 cut(s) 783
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 2 cut(s) 89, 558
BpuMI CCSGG 2 cut(s) 673, 674
Bsa29I ATCGAT 1 cut(s) 490
BsaAI YACGTR 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 671, 672, 673
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 2 cut(s) 144, 657
BseBI CCWGG 1 cut(s) 840
BseCI ATCGAT 1 cut(s) 490
BseDI CCNNGG 3 cut(s) 671, 672, 673
BseGI GGATG 2 cut(s) 389, 490
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 144, 657
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 566
BshFI GGCC 1 cut(s) 572
BshVI ATCGAT 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 294, 672
BsiSI CCGG 1 cut(s) 673
BsiWI CGTACG 1 cut(s) 531
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 1 cut(s) 572
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 294, 672
Bsp143I GATC 3 cut(s) 487, 804, 844
BspACI CCGC 2 cut(s) 411, 573
BspANI GGCC 1 cut(s) 572
BspCNI CTCAG 1 cut(s) 46
BspDI ATCGAT 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 203, 571
BspTNI GGTCTC 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 575
BsrDI GCAATG 2 cut(s) 144, 657
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 671, 672, 673
BssMI GATC 3 cut(s) 487, 804, 844
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 2 cut(s) 223, 531
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 265, 269
BstDEI CTNAG 5 cut(s) 54, 89, 470, 558, 685
BstF5I GGATG 2 cut(s) 389, 490
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 490, 807, 847
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 3 cut(s) 487, 804, 844
BstMWI GCNNNNNNNGC 2 cut(s) 29, 124
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 3 cut(s) 671, 672, 838
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 566
BstV2I GAAGAC 1 cut(s) 783
BstXI CCANNNNNNTGG 1 cut(s) 869
Bsu15I ATCGAT 1 cut(s) 490
BsuRI GGCC 1 cut(s) 572
BsuTUI ATCGAT 1 cut(s) 490
BtsCI GGATG 2 cut(s) 389, 490
BtsIMutI CAGTG 3 cut(s) 51, 375, 393
Cac8I GCNNGC 2 cut(s) 265, 269
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 570
Cfr9I CCCGGG 1 cut(s) 672
ClaI ATCGAT 1 cut(s) 490
CseI GACGC 1 cut(s) 863
Csp6I GTAC 3 cut(s) 26, 332, 532
CviAII CATG 1 cut(s) 414
CviQI GTAC 3 cut(s) 26, 332, 532
DdeI CTNAG 5 cut(s) 54, 89, 470, 558, 685
DpnI GATC 3 cut(s) 489, 806, 846
DpnII GATC 3 cut(s) 487, 804, 844
Eco31I GGTCTC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 46
Eco47III AGCGCT 1 cut(s) 33
Eco88I CYCGRG 2 cut(s) 294, 672
EcoRII CCWGG 1 cut(s) 838
EcoRV GATATC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 417
FaqI GGGAC 1 cut(s) 552
FatI CATG 1 cut(s) 413
FauNDI CATATG 1 cut(s) 156
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 3 cut(s) 411, 555, 573
FokI GGATG 2 cut(s) 376, 497
Fsp4HI GCNGC 3 cut(s) 411, 555, 573
FspBI CTAG 3 cut(s) 131, 363, 617
GlaI GCGC 1 cut(s) 33
GluI GCNGC 3 cut(s) 411, 555, 573
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 572
HapII CCGG 1 cut(s) 673
HgaI GACGC 1 cut(s) 863
HhaI GCGC 1 cut(s) 34
Hin1II CATG 1 cut(s) 417
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 7 cut(s) 80, 283, 306, 386, 440, 499, 752
HpaII CCGG 1 cut(s) 673
HphI GGTGA 4 cut(s) 410, 449, 646, 854
Hpy166II GTNNAC 1 cut(s) 647
Hpy188I TCNGA 6 cut(s) 19, 256, 305, 311, 479, 504
Hpy188III TCNNGA 5 cut(s) 131, 275, 294, 632, 826
Hpy8I GTNNAC 1 cut(s) 647
Hpy99I CGWCG 1 cut(s) 857
HpyAV CCTTC 2 cut(s) 560, 823
HpyCH4III ACNGT 2 cut(s) 223, 531
HpyCH4IV ACGT 3 cut(s) 534, 649, 762
HpyCH4V TGCA 7 cut(s) 4, 23, 108, 149, 178, 320, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 124
HpyF3I CTNAG 5 cut(s) 54, 89, 470, 558, 685
HpySE526I ACGT 3 cut(s) 534, 649, 762
Hsp92II CATG 1 cut(s) 417
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 3 cut(s) 487, 804, 844
LmnI GCTCC 1 cut(s) 677
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 3 cut(s) 10, 334, 337
MaeI CTAG 3 cut(s) 131, 363, 617
MaeII ACGT 3 cut(s) 534, 649, 762
MaeIII GTNAC 2 cut(s) 437, 700
MalI GATC 3 cut(s) 489, 806, 846
MbiI CCGCTC 1 cut(s) 575
MboI GATC 3 cut(s) 487, 804, 844
MboII GAAGA 3 cut(s) 575, 788, 814
MluCI AATT 6 cut(s) 139, 249, 588, 705, 718, 821
MlyI GAGTC 3 cut(s) 292, 434, 493
MmeI TCCRAC 1 cut(s) 753
MnlI CCTC 6 cut(s) 183, 271, 427, 489, 742, 792
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 759
MspI CCGG 1 cut(s) 673
MspR9I CCNGG 3 cut(s) 673, 674, 840
MvaI CCWGG 1 cut(s) 840
MwoI GCNNNNNNNGC 2 cut(s) 29, 124
NciI CCSGG 2 cut(s) 673, 674
NdeI CATATG 1 cut(s) 156
NdeII GATC 3 cut(s) 487, 804, 844
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 2 cut(s) 203, 571
NmuCI GTSAC 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 4 cut(s) 80, 306, 386, 752
Pfl23II CGTACG 1 cut(s) 531
PkrI GCNGC 3 cut(s) 412, 556, 574
PleI GAGTC 3 cut(s) 291, 434, 493
PpsI GAGTC 3 cut(s) 291, 434, 493
Ppu21I YACGTR 1 cut(s) 535
Psp1406I AACGTT 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspLI CGTACG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 203, 571
PspPI GGNCC 1 cut(s) 570
RsaI GTAC 3 cut(s) 27, 333, 533
RsaNI GTAC 3 cut(s) 26, 332, 532
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 3 cut(s) 411, 555, 573
Sau3AI GATC 3 cut(s) 487, 804, 844
Sau96I GGNCC 1 cut(s) 570
ScaI AGTACT 1 cut(s) 333
SchI GAGTC 3 cut(s) 292, 434, 493
ScrFI CCNGG 3 cut(s) 673, 674, 840
SfaNI GCATC 3 cut(s) 10, 334, 337
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 294
SmaI CCCGGG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 6 cut(s) 139, 249, 588, 705, 718, 821
SsiI CCGC 2 cut(s) 411, 573
SspMI CTAG 3 cut(s) 131, 363, 617
StyD4I CCNGG 3 cut(s) 671, 672, 838
TaaI ACNGT 2 cut(s) 223, 531
TaiI ACGT 3 cut(s) 537, 652, 765
TaqI TCGA 2 cut(s) 295, 490
TasI AATT 6 cut(s) 139, 249, 588, 705, 718, 821
TatI WGTACW 1 cut(s) 331
TauI GCSGC 2 cut(s) 413, 575
TfiI GAWTC 4 cut(s) 80, 306, 386, 752
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 3 cut(s) 58, 375, 400
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 4 cut(s) 133, 249, 378, 410
TspMI CCCGGG 1 cut(s) 672
TspRI CASTG 3 cut(s) 58, 375, 400
XapI RAATTY 2 cut(s) 249, 821
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 1 cut(s) 417
XhoI CTCGAG 1 cut(s) 294
XmaI CCCGGG 1 cut(s) 672
XspI CTAG 3 cut(s) 131, 363, 617
ZrmI AGTACT 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.