RLG00000023610

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000620
Physical Location & Seq
Forward (+)
25983271 .. 25986594
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023610

Sequence Viewer

Length: 1104 bp
ATGAGTCCCGCTCATTCAGATTGTGGAGCAACAAGCTCACTGCCCCCCCTTGATGTCAAGCTTGTCTGCGATCGCATCCTCGGCGACAAGGACATCGGCGCAGTCCACGTGCCTATCAAGGAGCTCTTCAAGTCCGCAGATCCCAAGAATATAAAATTCATCTCCTGTCAGATTCGATGGCTGTCCGAGAAACCCAAGGACGAGGTCATTTTCTCTTATAAGTTCGGCGACAAGGTAGATGCATTGGTGCAGGAGGCGTCAATGAAGGGCTTGTGTATGGAGAAGAGTGCAAGTAAGAGTGCTAGTAATTCGACAGTTTTTCGTATCAGAAACCCCGCGACTCACCAAGTGCTTTACTTGCCCGATCCACCTCCATATACTTCATCAGTAGACTTTGCTTTTAACTCATTCACTGGTGAGTGTAAAGTTCTATGTTTTTATTGGGAAAAGCTATATTTAAATGTCCCCGCTGCATTTGGATTCAAAGTTATAACCGTTGGAAAAGATGAGCAGTGGAGACCTTTAGAGCTCCCCGACCAAAATAAGCTACGCAAAAAAAGGGTGTTTAGAGGATGTTACTCTAAGGTTGAAGGGGTTTGTCATTTGTTTCAAATTATTAGGTTTACTGATGAAGAAGAAGATATGTACCTAGAAGTTCAATCTTTAGATCTATGGAGTGAACATTTTACAACGAATACTCTTCCCCAGGGAGTTTCCTTGGACTGGAATAAAGTTAGTGTTGTTCGTTGGAATAACTGCTTATCAGTCGGTTATATGAAAGAGGAATCCCTTGACCTCTTGGTGTTACAAGACTATAAGGAGCGAAAATGGAGTCCAACCATGATCATCATTCCCGTCAAAGGGCCAAAAAAAAACGACGGTCGTCCAAAATTTGCTAAGGAAATAACAAAAATTCCTTCTACCGAATTTGATTTGCATATCAATGATGAAGGGGACTATAGACTTTCATCTGTCAGGAAAGAGGAGATGAGAGAGGCCAAAAGTGGAGAGACTGGGGAGATATTACATAAGCCAAGCCTGATAAGTTTTAAGGGAATAATGATGCCAGAAAATGGTTATTACCCTAAGAATGAAGGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

368

Amino Acids

41.93

Weight (kDa)

7.52

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 85 - 287 6.8e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 219, 491
AccB7I CCANNNNNTGG 1 cut(s) 1073
AccBSI CCGCTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 390
AccII CGCG 1 cut(s) 338
AciI CCGC 4 cut(s) 9, 135, 336, 468
AclWI GGATC 2 cut(s) 134, 359
AcsI RAATTY 4 cut(s) 155, 890, 912, 926
AcvI CACGTG 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 349
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 4 cut(s) 723, 860, 861, 1073
AgsI TTSAA 5 cut(s) 130, 484, 590, 611, 659
AjnI CCWGG 1 cut(s) 705
AluBI AGCT 6 cut(s) 36, 61, 124, 451, 529, 547
AluI AGCT 6 cut(s) 36, 61, 124, 451, 529, 547
Alw21I GWGCWC 2 cut(s) 126, 531
Alw26I GTCTC 2 cut(s) 511, 1004
AlwI GGATC 2 cut(s) 134, 359
AoxI GGCC 2 cut(s) 863, 996
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 4 cut(s) 155, 890, 912, 926
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AsiSI GCGATCGC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 863
AsuHPI GGTGA 2 cut(s) 335, 428
BanII GRGCYC 2 cut(s) 126, 531
BbrPI CACGTG 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 126, 531
BbvI GCAGC 1 cut(s) 457
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 511, 1004
BfaI CTAG 2 cut(s) 303, 650
BfmI CTRYAG 1 cut(s) 958
BglII AGATCT 1 cut(s) 667
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 707
BmgT120I GGNCC 1 cut(s) 863
BmrFI CCNGG 1 cut(s) 707
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 3 cut(s) 84, 229, 1053
BmuI ACTGGG 1 cut(s) 1023
BoxI GACNNNNGTC 1 cut(s) 882
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 897
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 5 cut(s) 79, 195, 705, 706, 717
Bsc4I CCNNNNNNNGG 4 cut(s) 723, 860, 861, 1073
Bse1I ACTGG 3 cut(s) 418, 728, 1018
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 5 cut(s) 79, 195, 705, 706, 717
BseGI GGATG 2 cut(s) 75, 578
BseLI CCNNNNNNNGG 4 cut(s) 723, 860, 861, 1073
BseNI ACTGG 3 cut(s) 418, 728, 1018
BseRI GAGGAG 1 cut(s) 998
BseXI GCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 2 cut(s) 73, 883
BshFI GGCC 2 cut(s) 865, 998
BsiEI CGRYCG 2 cut(s) 73, 883
BsiHKAI GWGCWC 2 cut(s) 126, 531
BslFI GGGAC 2 cut(s) 449, 968
BslI CCNNNNNNNGG 4 cut(s) 723, 860, 861, 1073
BsmAI GTCTC 2 cut(s) 511, 1004
BsmFI GGGAC 2 cut(s) 449, 968
BsnI GGCC 2 cut(s) 865, 998
Bso31I GGTCTC 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 126, 531
Bsp143I GATC 5 cut(s) 70, 139, 364, 667, 843
BspACI CCGC 4 cut(s) 9, 135, 336, 468
BspANI GGCC 2 cut(s) 865, 998
BspFNI CGCG 1 cut(s) 338
BspPI GGATC 2 cut(s) 134, 359
BspQI GCTCTTC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 11
BsrI ACTGG 3 cut(s) 418, 728, 1018
BssECI CCNNGG 5 cut(s) 79, 195, 705, 706, 717
BssMI GATC 5 cut(s) 70, 139, 364, 667, 843
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 195, 717
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 316, 496, 881
Bst6I CTCTTC 3 cut(s) 131, 278, 705
BstACI GRCGYC 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 582, 897, 1086
BstF5I GGATG 2 cut(s) 75, 578
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 5 cut(s) 73, 142, 367, 670, 846
BstMAI GTCTC 2 cut(s) 511, 1004
BstMBI GATC 5 cut(s) 70, 139, 364, 667, 843
BstMCI CGRYCG 2 cut(s) 73, 883
BstMWI GCNNNNNNNGC 2 cut(s) 81, 358
BstNI CCWGG 1 cut(s) 707
BstPAI GACNNNNGTC 1 cut(s) 882
BstSCI CCNGG 1 cut(s) 705
BstSFI CTRYAG 1 cut(s) 958
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 2 cut(s) 139, 667
BstYI RGATCY 2 cut(s) 139, 667
BsuRI GGCC 2 cut(s) 865, 998
BtsCI GGATG 2 cut(s) 75, 578
BtsI GCAGTG 2 cut(s) 38, 518
BtsIMutI CAGTG 3 cut(s) 38, 411, 518
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 863
CseI GACGC 1 cut(s) 246
Csp6I GTAC 1 cut(s) 646
CviAII CATG 1 cut(s) 841
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 3 cut(s) 582, 897, 1086
DpnI GATC 5 cut(s) 72, 141, 366, 669, 845
DpnII GATC 5 cut(s) 70, 139, 364, 667, 843
DraI TTTAAA 1 cut(s) 459
DraIII CACNNNGTG 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 131, 278, 705
EarI CTCTTC 3 cut(s) 131, 278, 705
Ecl136II GAGCTC 2 cut(s) 124, 529
Eco130I CCWWGG 2 cut(s) 195, 717
Eco24I GRGCYC 2 cut(s) 126, 531
Eco31I GGTCTC 1 cut(s) 511
Eco53kI GAGCTC 2 cut(s) 124, 529
Eco72I CACGTG 1 cut(s) 109
EcoICRI GAGCTC 2 cut(s) 124, 529
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 2 cut(s) 195, 717
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 126, 531
ErhI CCWWGG 2 cut(s) 195, 717
FaeI CATG 1 cut(s) 844
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 449, 968
FatI CATG 1 cut(s) 840
FauI CCCGC 3 cut(s) 16, 343, 475
FbaI TGATCA 1 cut(s) 843
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 2 cut(s) 62, 585
FriOI GRGCYC 2 cut(s) 126, 531
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 2 cut(s) 303, 650
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 471
HaeIII GGCC 2 cut(s) 865, 998
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 6 cut(s) 4, 172, 340, 480, 785, 832
HphI GGTGA 2 cut(s) 335, 428
Hpy166II GTNNAC 4 cut(s) 106, 391, 624, 680
Hpy188I TCNGA 4 cut(s) 19, 171, 187, 329
Hpy188III TCNNGA 1 cut(s) 976
Hpy8I GTNNAC 4 cut(s) 106, 391, 624, 680
Hpy99I CGWCG 1 cut(s) 881
HpyAV CCTTC 5 cut(s) 259, 584, 927, 944, 1088
HpyCH4III ACNGT 3 cut(s) 316, 496, 881
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 242, 250, 290, 473, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 358
HpyF3I CTNAG 3 cut(s) 582, 897, 1086
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 5 cut(s) 70, 139, 364, 667, 843
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 4 cut(s) 26, 121, 534, 820
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 3 cut(s) 84, 229, 1053
MaeI CTAG 2 cut(s) 303, 650
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 575, 804
MalI GATC 5 cut(s) 72, 141, 366, 669, 845
MbiI CCGCTC 1 cut(s) 11
MboI GATC 5 cut(s) 70, 139, 364, 667, 843
MboII GAAGA 6 cut(s) 118, 295, 644, 647, 650, 692
MflI RGATCY 2 cut(s) 139, 667
MhlI GDGCHC 2 cut(s) 126, 531
MluCI AATT 6 cut(s) 155, 307, 612, 890, 912, 926
MlyI GAGTC 3 cut(s) 13, 334, 841
MmeI TCCRAC 3 cut(s) 478, 728, 860
MnlI CCTC 9 cut(s) 89, 196, 247, 381, 563, 775, 806, 976, 988
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 3 cut(s) 402, 458, 1050
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 707
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 81, 358
NdeII GATC 5 cut(s) 70, 139, 364, 667, 843
NlaIII CATG 1 cut(s) 844
NmeAIII GCCGAG 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 244
PasI CCCWGGG 1 cut(s) 706
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 3 cut(s) 172, 480, 785
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 1073
PkrI GCNGC 1 cut(s) 472
Ple19I CGATCG 1 cut(s) 73
PleI GAGTC 3 cut(s) 12, 334, 840
PmaCI CACGTG 1 cut(s) 109
PmlI CACGTG 1 cut(s) 109
PpsI GAGTC 3 cut(s) 12, 334, 840
Ppu21I YACGTR 1 cut(s) 109
PshAI GACNNNNGTC 1 cut(s) 882
PsiI TTATAA 2 cut(s) 219, 491
Psp124BI GAGCTC 2 cut(s) 126, 531
Psp6I CCWGG 1 cut(s) 705
PspCI CACGTG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 705
PspPI GGNCC 1 cut(s) 863
PsuI RGATCY 2 cut(s) 139, 667
PsyI GACNNNGTC 1 cut(s) 203
PvuI CGATCG 1 cut(s) 73
RgaI GCGATCGC 1 cut(s) 73
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 2 cut(s) 126, 531
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 402, 458, 1050
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 5 cut(s) 70, 139, 364, 667, 843
Sau96I GGNCC 1 cut(s) 863
SchI GAGTC 3 cut(s) 13, 334, 841
ScrFI CCNGG 1 cut(s) 707
SduI GDGCHC 2 cut(s) 126, 531
SfaAI GCGATCGC 1 cut(s) 73
SfaNI GCATC 3 cut(s) 84, 229, 1053
SfcI CTRYAG 1 cut(s) 958
SgfI GCGATCGC 1 cut(s) 73
SmiI ATTTAAAT 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 942
Sse9I AATT 6 cut(s) 155, 307, 612, 890, 912, 926
SsiI CCGC 4 cut(s) 9, 135, 336, 468
SspMI CTAG 2 cut(s) 303, 650
SstI GAGCTC 2 cut(s) 126, 531
StyD4I CCNGG 1 cut(s) 705
StyI CCWWGG 2 cut(s) 195, 717
SwaI ATTTAAAT 1 cut(s) 459
TaaI ACNGT 3 cut(s) 316, 496, 881
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 175, 311
TasI AATT 6 cut(s) 155, 307, 612, 890, 912, 926
TfiI GAWTC 3 cut(s) 172, 480, 785
Tru1I TTAA 3 cut(s) 402, 458, 1050
Tru9I TTAA 3 cut(s) 402, 458, 1050
TscAI CASTG 3 cut(s) 45, 418, 518
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 7 cut(s) 148, 278, 372, 645, 791, 957, 963
TspRI CASTG 3 cut(s) 45, 418, 518
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 1073
XapI RAATTY 4 cut(s) 155, 890, 912, 926
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 2 cut(s) 303, 650
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.