F-box-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 635 |
| AciI | CCGC | 3 cut(s) | 71, 470, 633 |
| AclI | AACGTT | 1 cut(s) | 709 |
| AcsI | RAATTY | 2 cut(s) | 881, 1046 |
| AcuI | CTGAAG | 1 cut(s) | 584 |
| AfaI | GTAC | 2 cut(s) | 87, 393 |
| AfeI | AGCGCT | 1 cut(s) | 93 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 596 |
| AjnI | CCWGG | 1 cut(s) | 1062 |
| AluBI | AGCT | 6 cut(s) | 126, 568, 617, 676, 740, 791 |
| AluI | AGCT | 6 cut(s) | 126, 568, 617, 676, 740, 791 |
| Alw26I | GTCTC | 1 cut(s) | 223 |
| Ama87I | CYCGRG | 2 cut(s) | 354, 732 |
| Aor51HI | AGCGCT | 1 cut(s) | 93 |
| AoxI | GGCC | 1 cut(s) | 630 |
| ApeKI | GCWGC | 2 cut(s) | 568, 614 |
| ApoI | RAATTY | 2 cut(s) | 881, 1046 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 491, 523 |
| AspLEI | GCGC | 1 cut(s) | 94 |
| AspS9I | GGNCC | 1 cut(s) | 630 |
| AsuC2I | CCSGG | 2 cut(s) | 733, 734 |
| AsuHPI | GGTGA | 4 cut(s) | 470, 509, 706, 1015 |
| AvaI | CYCGRG | 2 cut(s) | 354, 732 |
| BarI | GAAGNNNNNNTAC | 3 cut(s) | 78, 110, 1076 |
| BauI | CACGAG | 1 cut(s) | 980 |
| BbsI | GAAGAC | 1 cut(s) | 843 |
| BbvI | GCAGC | 2 cut(s) | 555, 626 |
| BccI | CCATC | 3 cut(s) | 13, 546, 653 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 217, 251 |
| BciT130I | CCWGG | 1 cut(s) | 1064 |
| BclI | TGATCA | 1 cut(s) | 1005 |
| BcnI | CCSGG | 2 cut(s) | 733, 734 |
| BcoDI | GTCTC | 1 cut(s) | 223 |
| BfaI | CTAG | 4 cut(s) | 191, 423, 677, 1096 |
| BfmI | CTRYAG | 1 cut(s) | 135 |
| BfoI | RGCGCY | 1 cut(s) | 95 |
| BisI | GCNGC | 4 cut(s) | 471, 569, 615, 633 |
| BlsI | GCNGC | 4 cut(s) | 472, 570, 616, 634 |
| BmcAI | AGTACT | 1 cut(s) | 393 |
| Bme1390I | CCNGG | 3 cut(s) | 733, 734, 1064 |
| BmeT110I | CYCGRG | 2 cut(s) | 354, 732 |
| BmgT120I | GGNCC | 1 cut(s) | 630 |
| BmiI | GGNNCC | 2 cut(s) | 263, 631 |
| BmrFI | CCNGG | 3 cut(s) | 733, 734, 1064 |
| BmsI | GCATC | 3 cut(s) | 70, 394, 397 |
| BpiI | GAAGAC | 1 cut(s) | 843 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 485, 517 |
| BpmI | CTGGAG | 2 cut(s) | 356, 932 |
| Bpu10I | CCTNAGC | 2 cut(s) | 149, 618 |
| BpuEI | CTTGAG | 2 cut(s) | 909, 1058 |
| BpuMI | CCSGG | 2 cut(s) | 733, 734 |
| Bsa29I | ATCGAT | 1 cut(s) | 550 |
| BsaI | GGTCTC | 1 cut(s) | 223 |
| BsaJI | CCNNGG | 3 cut(s) | 731, 732, 733 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 694, 724 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 596 |
| Bse118I | RCCGGY | 1 cut(s) | 67 |
| Bse1I | ACTGG | 2 cut(s) | 460, 949 |
| Bse3DI | GCAATG | 2 cut(s) | 204, 717 |
| BseBI | CCWGG | 1 cut(s) | 1064 |
| BseCI | ATCGAT | 1 cut(s) | 550 |
| BseDI | CCNNGG | 3 cut(s) | 731, 732, 733 |
| BseGI | GGATG | 2 cut(s) | 449, 550 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 596 |
| BseMI | GCAATG | 2 cut(s) | 204, 717 |
| BseMII | CTCAG | 2 cut(s) | 47, 105 |
| BseNI | ACTGG | 2 cut(s) | 460, 949 |
| BseRI | GAGGAG | 1 cut(s) | 353 |
| BseXI | GCAGC | 2 cut(s) | 555, 626 |
| BshFI | GGCC | 1 cut(s) | 632 |
| BshVI | ATCGAT | 1 cut(s) | 550 |
| BsiHKCI | CYCGRG | 2 cut(s) | 354, 732 |
| BsiSI | CCGG | 2 cut(s) | 68, 733 |
| BslFI | GGGAC | 2 cut(s) | 29, 612 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 596 |
| BsmAI | GTCTC | 1 cut(s) | 223 |
| BsmFI | GGGAC | 2 cut(s) | 29, 612 |
| BsnI | GGCC | 1 cut(s) | 632 |
| Bso31I | GGTCTC | 1 cut(s) | 223 |
| BsoBI | CYCGRG | 2 cut(s) | 354, 732 |
| Bsp143I | GATC | 3 cut(s) | 547, 864, 1005 |
| BspACI | CCGC | 3 cut(s) | 71, 470, 633 |
| BspANI | GGCC | 1 cut(s) | 632 |
| BspCNI | CTCAG | 2 cut(s) | 48, 106 |
| BspDI | ATCGAT | 1 cut(s) | 550 |
| BspLI | GGNNCC | 2 cut(s) | 263, 631 |
| BspTNI | GGTCTC | 1 cut(s) | 223 |
| BsrBI | CCGCTC | 1 cut(s) | 635 |
| BsrDI | GCAATG | 2 cut(s) | 204, 717 |
| BsrFI | RCCGGY | 1 cut(s) | 67 |
| BsrI | ACTGG | 2 cut(s) | 460, 949 |
| BssAI | RCCGGY | 1 cut(s) | 67 |
| BssECI | CCNNGG | 3 cut(s) | 731, 732, 733 |
| BssMI | GATC | 3 cut(s) | 547, 864, 1005 |
| BssSI | CACGAG | 1 cut(s) | 980 |
| Bst2BI | CACGAG | 1 cut(s) | 980 |
| Bst2UI | CCWGG | 1 cut(s) | 1064 |
| Bst4CI | ACNGT | 2 cut(s) | 283, 591 |
| BstC8I | GCNNGC | 2 cut(s) | 325, 329 |
| BstDEI | CTNAG | 6 cut(s) | 56, 114, 149, 530, 618, 745 |
| BstEII | GGTNACC | 1 cut(s) | 1066 |
| BstF5I | GGATG | 2 cut(s) | 449, 550 |
| BstH2I | RGCGCY | 1 cut(s) | 95 |
| BstHHI | GCGC | 1 cut(s) | 94 |
| BstKTI | GATC | 3 cut(s) | 550, 867, 1008 |
| BstMAI | GTCTC | 1 cut(s) | 223 |
| BstMBI | GATC | 3 cut(s) | 547, 864, 1005 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 89, 184, 574 |
| BstNI | CCWGG | 1 cut(s) | 1064 |
| BstNSI | RCATGY | 1 cut(s) | 477 |
| BstPI | GGTNACC | 1 cut(s) | 1066 |
| BstSCI | CCNGG | 3 cut(s) | 731, 732, 1062 |
| BstSFI | CTRYAG | 1 cut(s) | 135 |
| BstV1I | GCAGC | 2 cut(s) | 555, 626 |
| BstV2I | GAAGAC | 1 cut(s) | 843 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1030 |
| Bsu15I | ATCGAT | 1 cut(s) | 550 |
| BsuRI | GGCC | 1 cut(s) | 632 |
| BsuTUI | ATCGAT | 1 cut(s) | 550 |
| BtsCI | GGATG | 2 cut(s) | 449, 550 |
| BtsIMutI | CAGTG | 3 cut(s) | 111, 435, 453 |
| Cac8I | GCNNGC | 2 cut(s) | 325, 329 |
| CfoI | GCGC | 1 cut(s) | 94 |
| Cfr10I | RCCGGY | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 1 cut(s) | 630 |
| Cfr9I | CCCGGG | 1 cut(s) | 732 |
| ClaI | ATCGAT | 1 cut(s) | 550 |
| Csp6I | GTAC | 2 cut(s) | 86, 392 |
| CviAII | CATG | 2 cut(s) | 413, 474 |
| CviQI | GTAC | 2 cut(s) | 86, 392 |
| DdeI | CTNAG | 6 cut(s) | 56, 114, 149, 530, 618, 745 |
| DpnI | GATC | 3 cut(s) | 549, 866, 1007 |
| DpnII | GATC | 3 cut(s) | 547, 864, 1005 |
| DraI | TTTAAA | 1 cut(s) | 906 |
| Eco31I | GGTCTC | 1 cut(s) | 223 |
| Eco32I | GATATC | 1 cut(s) | 106 |
| Eco47III | AGCGCT | 1 cut(s) | 93 |
| Eco57I | CTGAAG | 1 cut(s) | 584 |
| Eco88I | CYCGRG | 2 cut(s) | 354, 732 |
| Eco91I | GGTNACC | 1 cut(s) | 1066 |
| EcoO65I | GGTNACC | 1 cut(s) | 1066 |
| EcoRI | GAATTC | 1 cut(s) | 1046 |
| EcoRII | CCWGG | 1 cut(s) | 1062 |
| EcoRV | GATATC | 1 cut(s) | 106 |
| FaeI | CATG | 2 cut(s) | 416, 477 |
| FaqI | GGGAC | 2 cut(s) | 29, 612 |
| FatI | CATG | 2 cut(s) | 412, 473 |
| FauNDI | CATATG | 1 cut(s) | 216 |
| FbaI | TGATCA | 1 cut(s) | 1005 |
| Fnu4HI | GCNGC | 4 cut(s) | 471, 569, 615, 633 |
| FokI | GGATG | 2 cut(s) | 436, 557 |
| Fsp4HI | GCNGC | 4 cut(s) | 471, 569, 615, 633 |
| FspBI | CTAG | 4 cut(s) | 191, 423, 677, 1096 |
| GlaI | GCGC | 1 cut(s) | 93 |
| GluI | GCNGC | 4 cut(s) | 471, 569, 615, 633 |
| GsuI | CTGGAG | 2 cut(s) | 356, 932 |
| HaeII | RGCGCY | 1 cut(s) | 95 |
| HaeIII | GGCC | 1 cut(s) | 632 |
| HapII | CCGG | 2 cut(s) | 68, 733 |
| HhaI | GCGC | 1 cut(s) | 94 |
| Hin1II | CATG | 2 cut(s) | 416, 477 |
| Hin6I | GCGC | 1 cut(s) | 92 |
| HinP1I | GCGC | 1 cut(s) | 92 |
| HinfI | GANTC | 6 cut(s) | 140, 343, 366, 446, 500, 559 |
| HpaII | CCGG | 2 cut(s) | 68, 733 |
| HphI | GGTGA | 4 cut(s) | 470, 509, 706, 1015 |
| Hpy166II | GTNNAC | 1 cut(s) | 707 |
| Hpy188I | TCNGA | 8 cut(s) | 57, 79, 316, 365, 371, 539, 564, 1052 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 335, 354, 692, 775, 886 |
| Hpy8I | GTNNAC | 1 cut(s) | 707 |
| HpyAV | CCTTC | 3 cut(s) | 620, 883, 994 |
| HpyCH4III | ACNGT | 2 cut(s) | 283, 591 |
| HpyCH4IV | ACGT | 3 cut(s) | 709, 822, 901 |
| HpyCH4V | TGCA | 7 cut(s) | 83, 168, 209, 238, 380, 410, 955 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 89, 184, 574 |
| HpyF3I | CTNAG | 6 cut(s) | 56, 114, 149, 530, 618, 745 |
| HpySE526I | ACGT | 3 cut(s) | 709, 822, 901 |
| Hsp92II | CATG | 2 cut(s) | 416, 477 |
| HspAI | GCGC | 1 cut(s) | 92 |
| Ksp22I | TGATCA | 1 cut(s) | 1005 |
| Kzo9I | GATC | 3 cut(s) | 547, 864, 1005 |
| LmnI | GCTCC | 1 cut(s) | 737 |
| Lsp1109I | GCAGC | 2 cut(s) | 555, 626 |
| LweI | GCATC | 3 cut(s) | 70, 394, 397 |
| MaeI | CTAG | 4 cut(s) | 191, 423, 677, 1096 |
| MaeII | ACGT | 3 cut(s) | 709, 822, 901 |
| MaeIII | GTNAC | 4 cut(s) | 35, 497, 760, 1066 |
| MalI | GATC | 3 cut(s) | 549, 866, 1007 |
| MbiI | CCGCTC | 1 cut(s) | 635 |
| MboI | GATC | 3 cut(s) | 547, 864, 1005 |
| MboII | GAAGA | 4 cut(s) | 635, 848, 874, 1096 |
| MluCI | AATT | 6 cut(s) | 199, 648, 765, 778, 881, 1046 |
| MlyI | GAGTC | 3 cut(s) | 352, 494, 553 |
| MmeI | TCCRAC | 1 cut(s) | 813 |
| MnlI | CCTC | 9 cut(s) | 243, 331, 487, 549, 802, 852, 933, 956, 1082 |
| MseI | TTAA | 2 cut(s) | 819, 905 |
| MspI | CCGG | 2 cut(s) | 68, 733 |
| MspR9I | CCNGG | 3 cut(s) | 733, 734, 1064 |
| MvaI | CCWGG | 1 cut(s) | 1064 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 89, 184, 574 |
| NciI | CCSGG | 2 cut(s) | 733, 734 |
| NdeI | CATATG | 1 cut(s) | 216 |
| NdeII | GATC | 3 cut(s) | 547, 864, 1005 |
| NlaIII | CATG | 2 cut(s) | 416, 477 |
| NlaIV | GGNNCC | 2 cut(s) | 263, 631 |
| NmuCI | GTSAC | 2 cut(s) | 35, 497 |
| NspI | RCATGY | 1 cut(s) | 477 |
| PaeR7I | CTCGAG | 1 cut(s) | 354 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 361 |
| PfeI | GAWTC | 3 cut(s) | 140, 366, 446 |
| PkrI | GCNGC | 4 cut(s) | 472, 570, 616, 634 |
| PleI | GAGTC | 3 cut(s) | 351, 494, 553 |
| PpsI | GAGTC | 3 cut(s) | 351, 494, 553 |
| Psp1406I | AACGTT | 1 cut(s) | 709 |
| Psp6I | CCWGG | 1 cut(s) | 1062 |
| PspEI | GGTNACC | 1 cut(s) | 1066 |
| PspGI | CCWGG | 1 cut(s) | 1062 |
| PspN4I | GGNNCC | 2 cut(s) | 263, 631 |
| PspPI | GGNCC | 1 cut(s) | 630 |
| RsaI | GTAC | 2 cut(s) | 87, 393 |
| RsaNI | GTAC | 2 cut(s) | 86, 392 |
| SaqAI | TTAA | 2 cut(s) | 819, 905 |
| SatI | GCNGC | 4 cut(s) | 471, 569, 615, 633 |
| Sau3AI | GATC | 3 cut(s) | 547, 864, 1005 |
| Sau96I | GGNCC | 1 cut(s) | 630 |
| ScaI | AGTACT | 1 cut(s) | 393 |
| SchI | GAGTC | 3 cut(s) | 352, 494, 553 |
| ScrFI | CCNGG | 3 cut(s) | 733, 734, 1064 |
| SfaNI | GCATC | 3 cut(s) | 70, 394, 397 |
| SfcI | CTRYAG | 1 cut(s) | 135 |
| Sfr274I | CTCGAG | 1 cut(s) | 354 |
| SlaI | CTCGAG | 1 cut(s) | 354 |
| SmaI | CCCGGG | 1 cut(s) | 734 |
| SmlI | CTYRAG | 3 cut(s) | 354, 924, 1073 |
| SmoI | CTYRAG | 3 cut(s) | 354, 924, 1073 |
| Sse9I | AATT | 6 cut(s) | 199, 648, 765, 778, 881, 1046 |
| SsiI | CCGC | 3 cut(s) | 71, 470, 633 |
| SspMI | CTAG | 4 cut(s) | 191, 423, 677, 1096 |
| StyD4I | CCNGG | 3 cut(s) | 731, 732, 1062 |
| TaaI | ACNGT | 2 cut(s) | 283, 591 |
| TaiI | ACGT | 3 cut(s) | 712, 825, 904 |
| TaqI | TCGA | 3 cut(s) | 8, 355, 550 |
| TasI | AATT | 6 cut(s) | 199, 648, 765, 778, 881, 1046 |
| TatI | WGTACW | 1 cut(s) | 391 |
| TauI | GCSGC | 2 cut(s) | 473, 635 |
| TfiI | GAWTC | 3 cut(s) | 140, 366, 446 |
| Tru1I | TTAA | 2 cut(s) | 819, 905 |
| Tru9I | TTAA | 2 cut(s) | 819, 905 |
| TscAI | CASTG | 3 cut(s) | 118, 435, 460 |
| TseFI | GTSAC | 2 cut(s) | 35, 497 |
| TseI | GCWGC | 2 cut(s) | 568, 614 |
| Tsp45I | GTSAC | 2 cut(s) | 35, 497 |
| TspDTI | ATGAA | 6 cut(s) | 193, 309, 438, 470, 1059, 1097 |
| TspMI | CCCGGG | 1 cut(s) | 732 |
| TspRI | CASTG | 3 cut(s) | 118, 435, 460 |
| XapI | RAATTY | 2 cut(s) | 881, 1046 |
| XbaI | TCTAGA | 1 cut(s) | 190 |
| XceI | RCATGY | 1 cut(s) | 477 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 956 |
| XhoI | CTCGAG | 1 cut(s) | 354 |
| XmaI | CCCGGG | 1 cut(s) | 732 |
| XspI | CTAG | 4 cut(s) | 191, 423, 677, 1096 |
| ZrmI | AGTACT | 1 cut(s) | 393 |