Rh3BG251000

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000620
Physical Location & Seq
Forward (+)
24230586 .. 24231638
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG251000.1

Sequence Viewer

Length: 1053 bp
ATGACTCATGAGCAGATGGTGCGTTCGAACAAAAGAAATAAAGAGAGTAGTTTGAAAGCCATAAAACTACCAAAACTTCCTTTTGATACCATCATTGAGATTTTGAGCTGGGTGCCAGTCGTGTCTTTGCTAAGGTGCAAGTGTGTGTGCAAGCAATGGTGTTCGTTGATTCAAGATGACAAGTTCGTTCTAAAACATATGGATCGAAGCCGTCCAACCGATCAGTTTTATCGTACCGCTGATGAAAAGTTCAAGTTTATTTCAACTTATGGAGGCTTGTGTTTGGAGAGAAGTCTTAGTAATTCTAGGGTTTTTCGTATCAGAAACCCTGCAGCCCAACAAGTGCTATACTTGCCTGATGGACCTGAGTATACTAACACCATGGATTTTGCTTTTAATTCATCTACTCGCGAGTGTAAAGTGGTATGCTGTTGTTGGGAGAACAACGAAGTTGACAGTACTGAAGCAAGTTTGAAAATTATAACTGTTGGAAAAGATGAGCAATGGAGAACTCTGATCCTCCCAAACCAAAGTTTGATGAATGCGCGCGGCGAGTTCGTGTTAAAAGTGCACTTCAGTGGAGTACGTAAGGTTGAAGGGGTTGTTCATTTGACCCAAATAATTAGACTTACTGCACCAGATTATTACTTACAAGTTCAATCTTTGGATGTTTGGAGAGAATGTTTCACCACTACTACTCTGCCTCAGGGAGTTTTCGTAGACCTGACAAAAGTTCGGGGTTATACTTGGAATAATTGCACGTCTGTTGTTGATATGACAGAGGAAACCCTCAACATTTTAGCCTTGGAAGACTTCAAAGAACACAAGTGGAGTAAAAACAAAATAAAAATTCCCTTGAAAGTTCTGAAGGATTGTCATCCACATTTGAGGGACCGCACTGTTTCGGCTGCATTCGAATTACTATTTGGAGCGAGCTATGATTTTAAATATAATAAGAGAAAGGGGATAGTTACCAAGGCCACACTTAGACCTTCTGGGGAAAGATTACATAAGCCAAGTCTCATGACGCTTAGAGGAATGAAGTCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

350

Amino Acids

40.49

Weight (kDa)

9.22

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 63 6.5e-10 F-box domain
F-box-like PF12937 24 - 66 2.3e-08 F-box-like
FBA_3 PF08268 82 - 290 1.1e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03910 FvH4_4g13750 FvH4_6g21492 FvH4_6g21740 FvH4_6g24450
malus_domestica MD05G1336000.v1.1 MD05G1336100.v1.1 MD10G1212400.v1.1 MD10G1311600.v1.1
prunus_persica Prupe.4G112200_v2.0.a1 Prupe.4G130000_v2.0.a1 Prupe.4G130300_v2.0.a1 Prupe.4G219800_v2.0.a1 Prupe.4G219900_v2.0.a1 Prupe.4G220100_v2.0.a1
pyrus_communis pycom05g30760 pycom10g26280
rosa_chinensis RchiOBHm_Chr3g0478691 RchiOBHm_Chr3g0479021 RchiOBHm_Chr5g0004511 RchiOBHm_Chr5g0019881 RchiOBHm_Chr5g0021181
rosa_laevigata RLG00000023610 RLG00000023612 RLG00000031235 RLG00000032481 RLG00000032506 RLG00000032589 RLG00000032592
rosa_multiflora Rmu_co8446543.1_g000001 Rmu_sc0001396.1_g000010 Rmu_sc0002454.1_g000005 Rmu_sc0002531.1_g000072 Rmu_sc0002715.1_g000028 Rmu_sc0005207.1_g000008 Rmu_sc0005645.1_g000010 Rmu_sc0008074.1_g000017 Rmu_sc0012286.1_g000001 Rmu_ssc0000244.1_g000041
rosa_roxburghii Rroxscaffold_1G00039650 Rroxscaffold_1G00058030 Rroxscaffold_1G00058290 Rroxscaffold_1G00071010 Rroxscaffold_6G00402820 Rroxscaffold_6G00403180
rosa_rugosa Rorug03G0167000 Rorug03G0167100 Rorug03G0170200 Rorug03G0304300 Rorug05G0054800 Rorug05G0065000 Rorug05G0189900
rosa_samantha Rh3AG219300 Rh3AG221100 Rh3BG251000 Rh3BG253400 Rh3BG253800 Rh3CG247800 Rh3CG250000 Rh3DG244100 Rh3DG245900 Rh4AG008500 Rh4CG009200 Rh4CG009600 Rh5AG275400 Rh5BG144100 Rh5BG144400 Rh5BG144500 Rh5BG147400 Rh5BG280200 Rh5CG043100 Rh5CG155800 Rh5CG312400 Rh5DG143800 Rh5DG146700 Rh5DG288400
rosa_wichuraiana Rw3G019900 Rw5G012800 Rw5G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 112
AccI GTMKAC 2 cut(s) 371, 720
AccII CGCG 3 cut(s) 411, 547, 549
AciI CCGC 3 cut(s) 237, 549, 895
AclWI GGATC 2 cut(s) 210, 511
AcsI RAATTY 1 cut(s) 849
AcuI CTGAAG 3 cut(s) 483, 559, 887
AfaI GTAC 3 cut(s) 235, 460, 585
AgsI TTSAA 9 cut(s) 55, 173, 253, 264, 475, 596, 659, 817, 859
AjiI CACGTC 1 cut(s) 762
AjuI GAANNNNNNNTTGG 2 cut(s) 909, 941
AleI CACNNNNGTG 1 cut(s) 576
AluBI AGCT 2 cut(s) 108, 936
AluI AGCT 2 cut(s) 108, 936
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 1025
Alw44I GTGCAC 1 cut(s) 569
AlwI GGATC 2 cut(s) 210, 511
AoxI GGCC 1 cut(s) 978
ApaLI GTGCAC 1 cut(s) 569
ApeKI GCWGC 2 cut(s) 332, 908
ApoI RAATTY 1 cut(s) 849
AspLEI GCGC 2 cut(s) 547, 549
AspS9I GGNCC 2 cut(s) 362, 892
AsuHPI GGTGA 1 cut(s) 679
AsuII TTCGAA 2 cut(s) 26, 915
AvaII GGWCC 2 cut(s) 362, 892
AxyI CCTNAGG 1 cut(s) 705
BaeGI GKGCMC 1 cut(s) 573
BanI GGYRCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 2 cut(s) 344, 895
BccI CCATC 3 cut(s) 10, 98, 353
BceAI ACGGC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 1025
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 3 cut(s) 333, 550, 909
BlsI GCNGC 3 cut(s) 334, 551, 910
BmcAI AGTACT 1 cut(s) 460
Bme18I GGWCC 2 cut(s) 362, 892
BmgBI CACGTC 1 cut(s) 762
BmgT120I GGNCC 2 cut(s) 362, 892
BmiI GGNNCC 2 cut(s) 114, 893
BpiI GAAGAC 1 cut(s) 816
Bpu10I CCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 2 cut(s) 26, 915
BsaAI YACGTR 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 876
BsaJI CCNNGG 3 cut(s) 381, 804, 975
BsaXI ACNNNNNCTCC 4 cut(s) 667, 697, 702, 732
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 705
Bse3DI GCAATG 2 cut(s) 161, 509
Bse8I GATNNNNATC 1 cut(s) 876
BseDI CCNNGG 3 cut(s) 381, 804, 975
BseGI GGATG 2 cut(s) 673, 877
BseJI GATNNNNATC 1 cut(s) 876
BseMI GCAATG 2 cut(s) 161, 509
BseMII CTCAG 2 cut(s) 357, 719
BseNI ACTGG 1 cut(s) 116
BsePI GCGCGC 1 cut(s) 545
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 344, 895
BseYI CCCAGC 1 cut(s) 108
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 3 cut(s) 411, 547, 549
BshFI GGCC 1 cut(s) 980
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 573
BslFI GGGAC 1 cut(s) 905
BsmAI GTCTC 1 cut(s) 1025
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 2 cut(s) 547, 911
BsnI GGCC 1 cut(s) 980
Bsp119I TTCGAA 2 cut(s) 26, 915
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 3 cut(s) 202, 220, 516
Bsp19I CCATGG 1 cut(s) 381
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 3 cut(s) 237, 549, 895
BspANI GGCC 1 cut(s) 980
BspCNI CTCAG 2 cut(s) 358, 718
BspFNI CGCG 3 cut(s) 411, 547, 549
BspHI TCATGA 2 cut(s) 7, 1023
BspLI GGNNCC 2 cut(s) 114, 893
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 210, 511
BspT104I TTCGAA 2 cut(s) 26, 915
BspT107I GGYRCC 1 cut(s) 112
BsrDI GCAATG 2 cut(s) 161, 509
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 381, 804, 975
BssHII GCGCGC 1 cut(s) 545
BssMI GATC 3 cut(s) 202, 220, 516
BssNAI GTATAC 1 cut(s) 372
BssT1I CCWWGG 3 cut(s) 381, 804, 975
Bst1107I GTATAC 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 458, 487, 901
BstAPI GCANNNNNTGC 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 587
BstBI TTCGAA 2 cut(s) 26, 915
BstC8I GCNNGC 3 cut(s) 152, 547, 934
BstDEI CTNAG 6 cut(s) 131, 296, 366, 705, 986, 1031
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 673, 877
BstFNI CGCG 3 cut(s) 411, 547, 549
BstHHI GCGC 2 cut(s) 547, 549
BstKTI GATC 3 cut(s) 205, 223, 519
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 3 cut(s) 202, 220, 516
BstMWI GCNNNNNNNGC 2 cut(s) 19, 352
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 573
BstSNI TACGTA 1 cut(s) 587
BstUI CGCG 3 cut(s) 411, 547, 549
BstV1I GCAGC 2 cut(s) 344, 895
BstV2I GAAGAC 1 cut(s) 816
BstZ17I GTATAC 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 1 cut(s) 980
BtgI CCRYGG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 762
BtsCI GGATG 2 cut(s) 673, 877
BtsIMutI CAGTG 2 cut(s) 583, 897
BtuMI TCGCGA 1 cut(s) 411
Cac8I GCNNGC 3 cut(s) 152, 547, 934
CciI TCATGA 2 cut(s) 7, 1023
CfoI GCGC 2 cut(s) 547, 549
Cfr13I GGNCC 2 cut(s) 362, 892
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 3 cut(s) 234, 459, 584
CviAII CATG 3 cut(s) 8, 382, 1024
CviQI GTAC 3 cut(s) 234, 459, 584
DdeI CTNAG 6 cut(s) 131, 296, 366, 705, 986, 1031
DpnI GATC 3 cut(s) 204, 222, 518
DpnII GATC 3 cut(s) 202, 220, 516
DraI TTTAAA 1 cut(s) 946
Eco105I TACGTA 1 cut(s) 587
Eco130I CCWWGG 3 cut(s) 381, 804, 975
Eco47I GGWCC 2 cut(s) 362, 892
Eco57I CTGAAG 3 cut(s) 483, 559, 887
Eco81I CCTNAGG 1 cut(s) 705
EcoT14I CCWWGG 3 cut(s) 381, 804, 975
ErhI CCWWGG 3 cut(s) 381, 804, 975
FaeI CATG 3 cut(s) 11, 385, 1027
FaqI GGGAC 1 cut(s) 905
FatI CATG 3 cut(s) 7, 381, 1023
FauNDI CATATG 1 cut(s) 198
FblI GTMKAC 2 cut(s) 371, 720
Fnu4HI GCNGC 3 cut(s) 333, 550, 909
FokI GGATG 2 cut(s) 680, 864
Fsp4HI GCNGC 3 cut(s) 333, 550, 909
FspBI CTAG 1 cut(s) 306
GlaI GCGC 2 cut(s) 546, 548
GluI GCNGC 3 cut(s) 333, 550, 909
GsaI CCCAGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 980
HgaI GACGC 1 cut(s) 1036
HhaI GCGC 2 cut(s) 547, 549
Hin1II CATG 3 cut(s) 11, 385, 1027
Hin6I GCGC 2 cut(s) 545, 547
HinP1I GCGC 2 cut(s) 545, 547
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 2 cut(s) 4, 169
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 4 cut(s) 372, 454, 571, 721
Hpy188I TCNGA 4 cut(s) 323, 516, 867, 1048
Hpy188III TCNNGA 4 cut(s) 8, 173, 410, 1024
Hpy8I GTNNAC 4 cut(s) 372, 454, 571, 721
HpyAV CCTTC 3 cut(s) 590, 862, 1002
HpyCH4III ACNGT 3 cut(s) 458, 487, 901
HpyCH4IV ACGT 2 cut(s) 586, 761
HpyCH4V TGCA 7 cut(s) 138, 150, 332, 571, 635, 759, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 352
HpyF3I CTNAG 6 cut(s) 131, 296, 366, 705, 986, 1031
HpySE526I ACGT 2 cut(s) 586, 761
Hsp92II CATG 3 cut(s) 11, 385, 1027
HspAI GCGC 2 cut(s) 545, 547
Kzo9I GATC 3 cut(s) 202, 220, 516
LmnI GCTCC 1 cut(s) 929
LpnPI CCDG 9 cut(s) 94, 129, 342, 369, 378, 651, 692, 737, 981
Lsp1109I GCAGC 2 cut(s) 344, 895
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 586, 761
MaeIII GTNAC 1 cut(s) 970
MalI GATC 3 cut(s) 204, 222, 518
MboI GATC 3 cut(s) 202, 220, 516
MboII GAAGA 1 cut(s) 821
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 7 cut(s) 301, 397, 477, 621, 754, 849, 917
MmeI TCCRAC 3 cut(s) 239, 469, 1026
MnlI CCTC 7 cut(s) 266, 530, 714, 775, 800, 882, 1028
MseI TTAA 3 cut(s) 396, 563, 945
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 239
Mva1269I GAATGC 2 cut(s) 547, 911
MvnI CGCG 3 cut(s) 411, 547, 549
MwoI GCNNNNNNNGC 2 cut(s) 19, 352
NcoI CCATGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 198
NdeII GATC 3 cut(s) 202, 220, 516
NlaIII CATG 3 cut(s) 11, 385, 1027
NlaIV GGNNCC 2 cut(s) 114, 893
NruI TCGCGA 1 cut(s) 411
NspV TTCGAA 2 cut(s) 26, 915
OliI CACNNNNGTG 1 cut(s) 576
PagI TCATGA 2 cut(s) 7, 1023
PauI GCGCGC 1 cut(s) 545
PctI GAATGC 2 cut(s) 547, 911
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 3 cut(s) 334, 551, 910
Ppu21I YACGTR 1 cut(s) 587
PsiI TTATAA 1 cut(s) 482
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 114, 893
PspPI GGNCC 2 cut(s) 362, 892
PstI CTGCAG 1 cut(s) 334
PteI GCGCGC 1 cut(s) 545
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 3 cut(s) 235, 460, 585
RsaNI GTAC 3 cut(s) 234, 459, 584
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 3 cut(s) 396, 563, 945
SatI GCNGC 3 cut(s) 333, 550, 909
Sau3AI GATC 3 cut(s) 202, 220, 516
Sau96I GGNCC 2 cut(s) 362, 892
ScaI AGTACT 1 cut(s) 460
SduI GDGCHC 1 cut(s) 573
SetI ASST 9 cut(s) 110, 137, 367, 589, 594, 726, 764, 938, 994
SfcI CTRYAG 1 cut(s) 330
SfuI TTCGAA 2 cut(s) 26, 915
SinI GGWCC 2 cut(s) 362, 892
SmiMI CAYNNNNRTG 1 cut(s) 576
SnaBI TACGTA 1 cut(s) 587
Sse9I AATT 7 cut(s) 301, 397, 477, 621, 754, 849, 917
SsiI CCGC 3 cut(s) 237, 549, 895
SspMI CTAG 1 cut(s) 306
StyI CCWWGG 3 cut(s) 381, 804, 975
TaaI ACNGT 3 cut(s) 458, 487, 901
TaiI ACGT 2 cut(s) 589, 764
TaqI TCGA 3 cut(s) 26, 205, 915
TasI AATT 7 cut(s) 301, 397, 477, 621, 754, 849, 917
TatI WGTACW 1 cut(s) 458
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 396, 563, 945
Tru9I TTAA 3 cut(s) 396, 563, 945
TscAI CASTG 2 cut(s) 583, 904
TseI GCWGC 2 cut(s) 332, 908
TspDTI ATGAA 4 cut(s) 258, 390, 554, 596
TspRI CASTG 2 cut(s) 583, 904
VneI GTGCAC 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 362, 892
XapI RAATTY 1 cut(s) 849
XmiI GTMKAC 2 cut(s) 371, 720
XspI CTAG 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.