FvH4_2g06570

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000508
Physical Location & Seq
Forward (+)
5446663 .. 5448045
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06570.t1

Sequence Viewer

Length: 822 bp
ATGATAAGAAGAAGCAAATTAACAAGGAGCATGAAGATGGAGAGCCAAGAAGCTAATTGTGTGATTGAGATCCCCCCTGCTTCTTCTTTTTCTTCCGAGAGGGCTTTGGAGAATTGGAGGAAGCTATCTGCTGCCCTCAAGAACCCTAAGAAGCGAGGGTTTCTCTTCAACCCCGCAGCTCGCTCCCGTTGGATGAAGCAGCAGGAAGAACACGTTCAGACCGCAATGCAATTAGTGAATTCTCACCGTGATCGGTTGTCTAACAGCAAGTTGCCTTTGCTTGGCACTAGTTCCGGTGATGAGTCAAGGCATACAACAAAGGCTTCTTCAACAGTATGGGTCTTTTTACTCACGAACCTCTGCCTAGAGACATTATCAGCCATCTTTGATCAAATTGCCTCTCCAAGCAAGCCTGACTATGCCCTATTTGGAATGGTGTTGGCCATTTCAGCTGTGCTCACTTGCATCGTGGAGCTCATTCACAAGGGTAAAAAGGAAGGAGTTGAACTAAAAAGATGGGGAAAGTTATGCTGGTTTTATTATCCACCTCCCAATGGCTCACTTTTTGGTACTTTCCCAGATATTTGTGGATTAGTCATTGCCATTTCACAGTATATTTGCTCTACTCTTCAGTATGTTTATCTCTGTAGGCATGTTAATAACCCTATCAAACTCTCCGTTTTGCCGGCAATCTTTCTTATTTGCTTGGCTGGTTCAACACTAATTAGGAACAGAAGCTACACCACAGATGAGACCTTGAAACATGCTACTCATCATCTTACAAAGACTAATTATCTCTGTAGATTTTGGCATTCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.94

Weight (kDa)

9.56

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 174, 222
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 2 cut(s) 281, 554
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 5 cut(s) 169, 330, 506, 717, 760
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 6 cut(s) 53, 124, 179, 452, 475, 738
AluI AGCT 6 cut(s) 53, 124, 179, 452, 475, 738
Alw21I GWGCWC 2 cut(s) 459, 477
Alw26I GTCTC 2 cut(s) 362, 746
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 3 cut(s) 131, 176, 199
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 236, 308
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 2 cut(s) 459, 477
BbvI GCAGC 3 cut(s) 118, 188, 211
BccI CCATC 3 cut(s) 31, 389, 510
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 362, 746
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 2 cut(s) 288, 365
BfmI CTRYAG 2 cut(s) 646, 799
BisI GCNGC 3 cut(s) 132, 177, 200
BlsI GCNGC 3 cut(s) 133, 178, 201
BmsI GCATC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 147, 179
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 746
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 554
Bse118I RCCGGY 1 cut(s) 685
Bse3DI GCAATG 2 cut(s) 231, 597
Bse8I GATNNNNATC 1 cut(s) 68
BseGI GGATG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 281, 554
BseMI GCAATG 2 cut(s) 231, 597
BseXI GCAGC 3 cut(s) 118, 188, 211
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 2 cut(s) 459, 477
BsiSI CCGG 2 cut(s) 294, 686
BslI CCNNNNNNNGG 2 cut(s) 281, 554
BsmAI GTCTC 2 cut(s) 362, 746
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 459, 477
Bsp143I GATC 3 cut(s) 69, 250, 388
BspACI CCGC 2 cut(s) 174, 222
BspANI GGCC 1 cut(s) 443
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 231, 597
BsrFI RCCGGY 1 cut(s) 685
BssAI RCCGGY 1 cut(s) 685
BssMI GATC 3 cut(s) 69, 250, 388
Bst4CI ACNGT 3 cut(s) 248, 334, 612
Bst6I CTCTTC 2 cut(s) 170, 633
BstC8I GCNNGC 3 cut(s) 181, 410, 687
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 3 cut(s) 72, 253, 391
BstMAI GTCTC 2 cut(s) 362, 746
BstMBI GATC 3 cut(s) 69, 250, 388
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNSI RCATGY 2 cut(s) 656, 767
BstSFI CTRYAG 2 cut(s) 646, 799
BstV1I GCAGC 3 cut(s) 118, 188, 211
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 181, 410, 687
Cfr10I RCCGGY 1 cut(s) 685
Csp6I GTAC 1 cut(s) 570
CviAII CATG 3 cut(s) 31, 653, 764
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 71, 252, 390
DpnII GATC 3 cut(s) 69, 250, 388
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 170, 633
EarI CTCTTC 2 cut(s) 170, 633
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 3 cut(s) 34, 656, 767
FaiI YATR 9 cut(s) 32, 312, 337, 420, 529, 615, 636, 654, 765
FatI CATG 3 cut(s) 30, 652, 763
FauI CCCGC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 132, 177, 200
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 3 cut(s) 132, 177, 200
FspBI CTAG 2 cut(s) 288, 365
GluI GCNGC 3 cut(s) 132, 177, 200
HaeIII GGCC 1 cut(s) 443
HapII CCGG 2 cut(s) 294, 686
Hin1II CATG 3 cut(s) 34, 656, 767
HinfI GANTC 1 cut(s) 302
HpaII CCGG 2 cut(s) 294, 686
HphI GGTGA 2 cut(s) 236, 308
Hpy188I TCNGA 2 cut(s) 97, 219
Hpy188III TCNNGA 2 cut(s) 139, 352
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 3 cut(s) 248, 334, 612
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 229, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 34, 656, 767
KroI GCCGGC 1 cut(s) 685
KroNI GCCGGC 1 cut(s) 687
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 3 cut(s) 69, 250, 388
LmnI GCTCC 3 cut(s) 27, 188, 472
LpnPI CCDG 8 cut(s) 90, 188, 307, 426, 517, 591, 696, 699
Lsp1109I GCAGC 3 cut(s) 118, 188, 211
LweI GCATC 1 cut(s) 474
MaeI CTAG 2 cut(s) 288, 365
MaeII ACGT 1 cut(s) 213
MalI GATC 3 cut(s) 71, 252, 390
MboI GATC 3 cut(s) 69, 250, 388
MboII GAAGA 8 cut(s) 21, 46, 75, 84, 157, 218, 318, 620
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 459, 477
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 8 cut(s) 17, 55, 112, 230, 238, 393, 723, 790
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 7 cut(s) 93, 111, 146, 149, 368, 409, 558
Mox20I TGGCCA 1 cut(s) 443
MroNI GCCGGC 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 213
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 20, 657
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 294, 686
Mva1269I GAATGC 1 cut(s) 811
MwoI GCNNNNNNNGC 1 cut(s) 449
NaeI GCCGGC 1 cut(s) 687
NdeII GATC 3 cut(s) 69, 250, 388
NgoMIV GCCGGC 1 cut(s) 685
NlaIII CATG 3 cut(s) 34, 656, 767
NspI RCATGY 2 cut(s) 656, 767
PctI GAATGC 1 cut(s) 811
PdiI GCCGGC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 213
PkrI GCNGC 3 cut(s) 133, 178, 201
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 477
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PsuI RGATCY 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 20, 657
SatI GCNGC 3 cut(s) 132, 177, 200
Sau3AI GATC 3 cut(s) 69, 250, 388
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 2 cut(s) 459, 477
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 2 cut(s) 646, 799
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 8 cut(s) 17, 55, 112, 230, 238, 393, 723, 790
SsiI CCGC 2 cut(s) 174, 222
SspMI CTAG 2 cut(s) 288, 365
SstI GAGCTC 1 cut(s) 477
TaaI ACNGT 3 cut(s) 248, 334, 612
TaiI ACGT 1 cut(s) 216
TasI AATT 8 cut(s) 17, 55, 112, 230, 238, 393, 723, 790
Tru1I TTAA 2 cut(s) 20, 657
Tru9I TTAA 2 cut(s) 20, 657
TseI GCWGC 3 cut(s) 131, 176, 199
TspDTI ATGAA 2 cut(s) 47, 209
TspGWI ACGGA 2 cut(s) 667, 805
XapI RAATTY 1 cut(s) 238
XceI RCATGY 2 cut(s) 656, 767
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 2 cut(s) 288, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.