Rw6G018370

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000508
Physical Location & Seq
Reverse (-)
36526238 .. 36526780
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018370.1

Sequence Viewer

Length: 465 bp
ATGGCTACTCCAGTCGAGTGGATCTTTCTACTCACTAACCTTGGCCTAGAGATTTTGTCAGCTGCTTTTGATCAGGCTTCCTCCCCAAGCAAGCCACACTATGCACTATTTGGTGTGCTGTTTGCTATTGCAGCTATGTTTGTTTGCATTTGGGAGCTCATTCACAAGGGCATCAATGAAAAAGTAGTATTGAAGAAGTTTGGAAAGCTATGGTGGTATTATTATCCAGACCCCCACGAAAGCACGCCTTTTGGTACTCTCCCTGACATTTATGGACTAATTGGGGGAATTTCTCAGTGTATATGCTCCATAACTCAATATGCTTACTTCTCTTGGCATGCTGATAGTCCCATAAAACTATCCCTTTTACCTACCATCTTTCTTTTGTGTTTGGCCGGTTCAAGACTAAATAGAAATCGAAACCATGGTCAGACTGTTGGACCTAAATCCCTAGACAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.28

Weight (kDa)

7.69

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 288
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 2 cut(s) 193, 402
AluBI AGCT 4 cut(s) 62, 134, 157, 208
AluI AGCT 4 cut(s) 62, 134, 157, 208
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 43, 393
ApeKI GCWGC 2 cut(s) 62, 131
ApoI RAATTY 1 cut(s) 288
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
AspS9I GGNCC 1 cut(s) 440
AvaII GGWCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 49, 143
BccI CCATC 1 cut(s) 383
BclI TGATCA 1 cut(s) 70
BfaI CTAG 2 cut(s) 47, 452
BisI GCNGC 2 cut(s) 63, 132
BlsI GCNGC 2 cut(s) 64, 133
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmsI GCATC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 40, 424
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 40, 424
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 2 cut(s) 49, 143
BshFI GGCC 2 cut(s) 45, 395
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 2 cut(s) 45, 395
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 21, 70
Bsp19I CCATGG 1 cut(s) 424
BspANI GGCC 2 cut(s) 45, 395
BspCNI CTCAG 1 cut(s) 307
BspPI GGATC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 40, 424
BssMI GATC 2 cut(s) 21, 70
BssT1I CCWWGG 2 cut(s) 40, 424
Bst4CI ACNGT 1 cut(s) 436
BstC8I GCNNGC 3 cut(s) 92, 245, 339
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 424
BstKTI GATC 2 cut(s) 24, 73
BstMBI GATC 2 cut(s) 21, 70
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 49, 143
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 2 cut(s) 45, 395
BtgI CCRYGG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 3 cut(s) 92, 245, 339
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 338, 425
CviJI RGCY 9 cut(s) 5, 45, 62, 77, 94, 134, 157, 208, 395
CviKI_1 RGCY 9 cut(s) 5, 45, 62, 77, 94, 134, 157, 208, 395
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 23, 72
DpnII GATC 2 cut(s) 21, 70
EaeI YGGCCR 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 40, 424
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 40, 424
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 40, 424
FaeI CATG 2 cut(s) 341, 428
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 337, 424
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 63, 132
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 63, 132
FspBI CTAG 2 cut(s) 47, 452
GluI GCNGC 2 cut(s) 63, 132
HaeIII GGCC 2 cut(s) 45, 395
HapII CCGG 1 cut(s) 396
Hin1II CATG 2 cut(s) 341, 428
HpaII CCGG 1 cut(s) 396
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 2 cut(s) 227, 402
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 3 cut(s) 104, 131, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 341, 428
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 21, 70
LmnI GCTCC 2 cut(s) 154, 311
LpnPI CCDG 5 cut(s) 24, 59, 240, 276, 409
Lsp1109I GCAGC 2 cut(s) 49, 143
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 47, 452
MalI GATC 2 cut(s) 23, 72
MboI GATC 2 cut(s) 21, 70
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 279, 288
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 424
NdeII GATC 2 cut(s) 21, 70
NlaIII CATG 2 cut(s) 341, 428
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 64, 133
Psp124BI GAGCTC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 440
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 2 cut(s) 63, 132
Sau3AI GATC 2 cut(s) 21, 70
Sau96I GGNCC 1 cut(s) 440
SduI GDGCHC 1 cut(s) 159
SetI ASST 7 cut(s) 42, 64, 136, 159, 210, 373, 445
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 1 cut(s) 440
SphI GCATGC 1 cut(s) 341
Sse9I AATT 2 cut(s) 279, 288
SspMI CTAG 2 cut(s) 47, 452
SstI GAGCTC 1 cut(s) 159
StyI CCWWGG 2 cut(s) 40, 424
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 15, 418
TasI AATT 2 cut(s) 279, 288
TscAI CASTG 1 cut(s) 302
TseI GCWGC 2 cut(s) 62, 131
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 341
XspI CTAG 2 cut(s) 47, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.