Rh6CG087300

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000508
Physical Location & Seq
Forward (+)
9513314 .. 9515294
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG087300.1

Sequence Viewer

Length: 387 bp
ATGGTGTTGGCGATTTTAGCTGTGCTAATTTGCATCTTGGAGCTCATTCACAAGGGCAAAAAGGAAGGAGTTGAGCTGAAAAGATGGGGAAAGTTGTGCTGGTTTTATTATCCACCTCCTAATGAATCACTTTTTGGTACTTTCCCAGATATTTGTGGATTAGTCATTGCCATCTCACAGTATATTTGCTCCACTGTTCAGTATGTTTATCTGTGCAGGCATGCTAATAACCCCATCAAACTATCCGTTTTGCCGGCCATCTTTCTTATTTGTTTGGCTGGTTCAAAACTAATTAGGAACAGAAGCTACACCACAAATGAGACCTTTAAACATACTACTCATCATATAACGAAGATTAATTTTTGTAGATTTTGGCATTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.74

Weight (kDa)

9.28

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 1 cut(s) 139
AgsI TTSAA 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 4 cut(s) 20, 43, 76, 306
AluI AGCT 4 cut(s) 20, 43, 76, 306
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 1 cut(s) 255
AseI ATTAAT 1 cut(s) 357
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 4 cut(s) 78, 179, 242, 266
BcoDI GTCTC 1 cut(s) 314
BmsI GCATC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 45
BspANI GGCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 180, 196
BstC8I GCNNGC 3 cut(s) 218, 222, 255
BstMAI GTCTC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 224
BsuRI GGCC 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 218, 222, 255
Cfr10I RCCGGY 1 cut(s) 253
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 221
CviJI RGCY 6 cut(s) 20, 43, 76, 257, 278, 306
CviKI_1 RGCY 6 cut(s) 20, 43, 76, 257, 278, 306
CviQI GTAC 1 cut(s) 138
DraI TTTAAA 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 224
FaiI YATR 6 cut(s) 183, 204, 222, 333, 345, 347
FatI CATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 254
Hin1II CATG 1 cut(s) 224
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 180, 196
HpyCH4V TGCA 2 cut(s) 33, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 224
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 40, 194
LpnPI CCDG 5 cut(s) 85, 159, 202, 264, 267
LweI GCATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 27, 291, 358
MnlI CCTC 1 cut(s) 126
MroNI GCCGGC 1 cut(s) 253
MseI TTAA 2 cut(s) 327, 357
MspI CCGG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 17
NaeI GCCGGC 1 cut(s) 255
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 1 cut(s) 224
NspI RCATGY 1 cut(s) 224
PaeI GCATGC 1 cut(s) 224
PctI GAATGC 1 cut(s) 376
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 45
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 327, 357
SduI GDGCHC 1 cut(s) 45
SetI ASST 6 cut(s) 22, 45, 78, 118, 308, 326
SfaNI GCATC 1 cut(s) 42
SgeI CNNG 8 cut(s) 49, 64, 112, 158, 229, 233, 266, 291
SphI GCATGC 1 cut(s) 224
Sse9I AATT 3 cut(s) 27, 291, 358
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 2 cut(s) 180, 196
TasI AATT 3 cut(s) 27, 291, 358
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 327, 357
Tru9I TTAA 2 cut(s) 327, 357
TscAI CASTG 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 199
VspI ATTAAT 1 cut(s) 357
XceI RCATGY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.