Rmu_sc0004049.1_g000010

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004049.1
OG0000508
Physical Location & Seq
Forward (+)
38679 .. 39137
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004049.1_g000010.1.cds

Sequence Viewer

Length: 459 bp
atggcctcctccccagttccaaagtacgaggtcttcttgagcagctctagcaaggatgcagacaatttttcataccttttacacaaaggtttggaggataaaggaattctcactctcagaagcaaccaagaggttgagggaggaggcacagcttccctagacgtaatcagacaatcgtggtcggccatagtcattatctcgccagactatgcttcttccccttggctcctgcaacaacttgtacagattcttcaagcaaataatctatatggtatgaaagttttaccagtttttcaccttgtcaatccctccgatgtccgacaccaaaggggaaccattggggaaagcctgaagaagcacgtacaataccaggtcgaagagataaacagatggaggcaagctttggcaacggtggcaaatttcagtggatcgaatactggggacgccaagtatgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

152

Amino Acids

16.83

Weight (kDa)

6.91

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 2 cut(s) 105, 418
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 3 cut(s) 26, 243, 363
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 3 cut(s) 45, 152, 401
AluI AGCT 3 cut(s) 45, 152, 401
AlwI GGATC 1 cut(s) 436
AoxI GGCC 2 cut(s) 3, 183
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 2 cut(s) 105, 418
AsuHPI GGTGA 1 cut(s) 287
BarI GAAGNNNNNNTAC 4 cut(s) 17, 49, 234, 266
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 384
BciT130I CCWGG 1 cut(s) 371
BfaI CTAG 2 cut(s) 48, 158
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 227, 334
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 2 cut(s) 8, 447
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 2 cut(s) 8, 447
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 14, 287, 442
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 3 cut(s) 14, 287, 442
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 2 cut(s) 5, 185
BslFI GGGAC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 2 cut(s) 5, 185
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 428
BspANI GGCC 2 cut(s) 5, 185
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 227, 334
BspPI GGATC 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 3 cut(s) 14, 287, 442
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 428
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 444
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 431
BstMBI GATC 1 cut(s) 428
BstMWI GCNNNNNNNGC 3 cut(s) 48, 413, 452
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 5, 185
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 399
CseI GACGC 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 3 cut(s) 25, 242, 362
CviAII CATG 1 cut(s) 456
CviJI RGCY 7 cut(s) 5, 45, 152, 185, 226, 348, 401
CviKI_1 RGCY 7 cut(s) 5, 45, 152, 185, 226, 348, 401
CviQI GTAC 3 cut(s) 25, 242, 362
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 430
DpnII GATC 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 459
FaiI YATR 8 cut(s) 73, 188, 210, 268, 270, 275, 453, 457
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 455
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 2 cut(s) 48, 158
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 5, 185
HgaI GACGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 1 cut(s) 247
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 119, 170, 313, 320
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 162, 360
HpyCH4V TGCA 3 cut(s) 59, 232, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 413, 452
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 2 cut(s) 162, 360
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 1 cut(s) 459
Kzo9I GATC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 8 cut(s) 27, 216, 242, 300, 356, 362, 383, 423
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 46
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 2 cut(s) 48, 158
MaeII ACGT 2 cut(s) 162, 360
MalI GATC 1 cut(s) 430
MboI GATC 1 cut(s) 428
MboII GAAGA 5 cut(s) 25, 207, 242, 364, 389
MluCI AATT 3 cut(s) 64, 105, 418
MmeI TCCRAC 1 cut(s) 343
Mph1103I ATGCAT 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 48, 413, 452
NdeII GATC 1 cut(s) 428
NlaIII CATG 1 cut(s) 459
NlaIV GGNNCC 2 cut(s) 227, 334
NsiI ATGCAT 1 cut(s) 457
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 227, 334
RsaI GTAC 3 cut(s) 26, 243, 363
RsaNI GTAC 3 cut(s) 25, 242, 362
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 371
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 64, 105, 418
SspMI CTAG 2 cut(s) 48, 158
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 165, 363
TaqI TCGA 2 cut(s) 375, 431
TasI AATT 3 cut(s) 64, 105, 418
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 60, 290
TspRI CASTG 1 cut(s) 430
XapI RAATTY 2 cut(s) 105, 418
XspI CTAG 2 cut(s) 48, 158
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.