Prupe.5G012700_v2.0.a1

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000508
Physical Location & Seq
Reverse (-)
1366275 .. 1369683
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G012700.3

Sequence Viewer

Length: 810 bp
ATGAGGGCTACTTCCAAATCAACAGAGTGGATATTTTTAGCCACTAGCCTTGGCCTAGAGATCTTGTCAGCTGCTTGTGATCAGGCTTCCTCCCCAAGAACACCCCACTATGCACTATTTGGGATGCTGTTCGCTATTGCAGCTGTGCTCATTTCCATCTGGGAGCTAATTTACAGAGGTAAAAAGGAAAGAGTTGTGTTGAGGAGATGGGGAATGCTCTGGTGGTTTTATCATACACCACCTCCTCGACATACGCCTTTTGGTACGCTTCCTGACATTTATGGACTAGTTGCTGGCATCTCACAGTGCATTTGCTCTATAGTTCAGTATGTTTACTGCCTTCGGCATGCTAATAGTCCTTTCAAAGCATCCCTTTTGCCTGCCATATTTCTTATGTGTTTAGGTGGTTCAAAACTATGTAATAACCGAATGAACGCGAATACCACTGATAACAAGGACTCGTGCGAAAATTCTTCAAGCACGGAAGAAACTTCGTGGCATGCAATCAAGGTAGATCTACCATTTCTTTATGATCAGGAGGTAGAGGTTGAATGCAACATAGAGCAGCATTGGCTGCAAGAGCAGCGGCGGCAACCGCAGGAGCAGCAGCAGCTGCTGGAGATGTGGCTGCAGGAGCAGCATGAGCAGTATGAGCAGTATGAGCAACAGAAGGAGCGGCGGCGGCTAGAGCTGCAGCGGCTGCAGGAGCAGCAGGAGCGGCTGCAGGAGCTGCAGCGGCGGCTGGAGCTGGAGCAGGAGCAAGAGCAGCAGAAGTTCCTGCGACATCGGCGAGTAGTGAAGGCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

31.86

Weight (kDa)

6.27

Isoelectric Point (pI)

82.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 676, 718
AccII CGCG 1 cut(s) 437
AcsI RAATTY 1 cut(s) 469
AfaI GTAC 1 cut(s) 265
AgsI TTSAA 4 cut(s) 364, 411, 477, 551
AhlI ACTAGT 1 cut(s) 286
AluBI AGCT 7 cut(s) 71, 143, 166, 613, 691, 730, 748
AluI AGCT 7 cut(s) 71, 143, 166, 613, 691, 730, 748
Alw21I GWGCWC 1 cut(s) 150
AlwNI CAGNNNCTG 4 cut(s) 613, 616, 700, 730
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 469
BauI CACGAG 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 2 cut(s) 164, 201
BclI TGATCA 2 cut(s) 79, 532
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 4 cut(s) 45, 56, 287, 686
BfmI CTRYAG 6 cut(s) 318, 629, 692, 701, 722, 731
BglII AGATCT 2 cut(s) 60, 514
BmsI GCATC 3 cut(s) 114, 306, 377
BpmI CTGGAG 3 cut(s) 638, 764, 770
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 2 cut(s) 129, 368
BseRI GAGGAG 2 cut(s) 217, 234
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 150
BsmI GAATGC 2 cut(s) 219, 557
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 4 cut(s) 60, 79, 514, 532
BspANI GGCC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 437
BspMAI CTGCAG 5 cut(s) 633, 696, 705, 726, 735
BsrBI CCGCTC 2 cut(s) 676, 718
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 4 cut(s) 60, 79, 514, 532
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 306
BstAPI GCANNNNNTGC 4 cut(s) 574, 613, 700, 730
BstC8I GCNNGC 4 cut(s) 295, 348, 381, 501
BstF5I GGATG 2 cut(s) 129, 368
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 4 cut(s) 63, 82, 517, 535
BstMBI GATC 4 cut(s) 60, 79, 514, 532
BstNSI RCATGY 2 cut(s) 350, 503
BstSFI CTRYAG 6 cut(s) 318, 629, 692, 701, 722, 731
BstUI CGCG 1 cut(s) 437
BstX2I RGATCY 2 cut(s) 60, 514
BstYI RGATCY 2 cut(s) 60, 514
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 2 cut(s) 129, 368
BtsIMutI CAGTG 2 cut(s) 311, 444
Cac8I GCNNGC 4 cut(s) 295, 348, 381, 501
CaiI CAGNNNCTG 4 cut(s) 613, 616, 700, 730
Csp6I GTAC 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 3 cut(s) 347, 500, 641
CviQI GTAC 1 cut(s) 264
DpnI GATC 4 cut(s) 62, 81, 516, 534
DpnII GATC 4 cut(s) 60, 79, 514, 532
Eco130I CCWWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 3 cut(s) 350, 503, 644
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 3 cut(s) 346, 499, 640
FbaI TGATCA 2 cut(s) 79, 532
FokI GGATG 2 cut(s) 136, 355
FspBI CTAG 4 cut(s) 45, 56, 287, 686
GsuI CTGGAG 3 cut(s) 638, 764, 770
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 3 cut(s) 350, 503, 644
HinfI GANTC 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 272, 536
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 3 cut(s) 350, 664, 793
HpyCH4III ACNGT 1 cut(s) 306
Hsp92II CATG 3 cut(s) 350, 503, 644
Ksp22I TGATCA 2 cut(s) 79, 532
Kzo9I GATC 4 cut(s) 60, 79, 514, 532
LweI GCATC 3 cut(s) 114, 306, 377
MaeI CTAG 4 cut(s) 45, 56, 287, 686
MalI GATC 4 cut(s) 62, 81, 516, 534
MbiI CCGCTC 2 cut(s) 676, 718
MboI GATC 4 cut(s) 60, 79, 514, 532
MboII GAAGA 2 cut(s) 465, 497
MflI RGATCY 2 cut(s) 60, 514
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 168, 469
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 7 cut(s) 100, 170, 195, 252, 255, 532, 538
MspA1I CMGCKG 6 cut(s) 71, 143, 586, 613, 697, 736
Mva1269I GAATGC 2 cut(s) 219, 557
MvnI CGCG 1 cut(s) 437
NdeII GATC 4 cut(s) 60, 79, 514, 532
NlaIII CATG 3 cut(s) 350, 503, 644
NspI RCATGY 2 cut(s) 350, 503
PaeI GCATGC 2 cut(s) 350, 503
PctI GAATGC 2 cut(s) 219, 557
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PstI CTGCAG 5 cut(s) 633, 696, 705, 726, 735
PstNI CAGNNNCTG 4 cut(s) 613, 616, 700, 730
PsuI RGATCY 2 cut(s) 60, 514
PvuII CAGCTG 3 cut(s) 71, 143, 613
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
Sau3AI GATC 4 cut(s) 60, 79, 514, 532
SchI GAGTC 1 cut(s) 452
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 3 cut(s) 114, 306, 377
SfcI CTRYAG 6 cut(s) 318, 629, 692, 701, 722, 731
SpeI ACTAGT 1 cut(s) 286
SphI GCATGC 2 cut(s) 350, 503
Sse9I AATT 2 cut(s) 168, 469
SspMI CTAG 4 cut(s) 45, 56, 287, 686
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 168, 469
TauI GCSGC 9 cut(s) 589, 592, 679, 682, 685, 700, 721, 739, 742
TscAI CASTG 2 cut(s) 311, 451
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 311, 451
XapI RAATTY 1 cut(s) 469
XceI RCATGY 2 cut(s) 350, 503
XspI CTAG 4 cut(s) 45, 56, 287, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.