Rh6BG090400

Serine threonine-protein kinase PBS1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000508
Physical Location & Seq
Forward (+)
14183723 .. 14185037
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG090400.1

Sequence Viewer

Length: 315 bp
ATGGAGAGCCAAGAAGCTTCTGTGATTGAGATCCGACCTTCTTTTTCTTCAAAGAGGGCTTTGGAGAATTGGAGGAAGCTATCTGCTGGCCTCAAGAAGCCCAACAAGCGACAGTTTCTCTTCAACCCTGCGGCTCGCGCCCTCTGGCTTAAGGAGCAGGAGGAACGCATTCAGACCGTATTGCAATTTGTGAATGCTCGCCAGGATCGGTTGTCTAACAGCAGGTTGTCTTTGCTTGGCAGTAGTTCCGGTGACGAGTCAAGGCACACAACAAAGGTTTTGGCATTCAGTTTAGATTTAGTAGGGTTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.88

Weight (kDa)

10.41

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 25, 213
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 51, 124
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 17, 79
AluI AGCT 2 cut(s) 17, 79
AlwI GGATC 2 cut(s) 25, 213
AoxI GGCC 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 203
BseJI GATNNNNATC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 249
BsmI GAATGC 3 cut(s) 168, 199, 284
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 30, 205
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 25, 213
BspTI CTTAAG 1 cut(s) 149
BssMI GATC 2 cut(s) 30, 205
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 114, 178
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 88, 136, 199
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 33, 208
BstMBI GATC 2 cut(s) 30, 205
BstMWI GCNNNNNNNGC 3 cut(s) 106, 137, 154
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 1 cut(s) 90
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 88, 136, 199
CfoI GCGC 1 cut(s) 140
CviJI RGCY 8 cut(s) 9, 17, 59, 79, 90, 100, 134, 148
CviKI_1 RGCY 8 cut(s) 9, 17, 59, 79, 90, 100, 134, 148
DpnI GATC 2 cut(s) 32, 207
DpnII GATC 2 cut(s) 30, 205
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 140
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 35, 174
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 114, 178
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 137, 154
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 30, 205
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 8 cut(s) 72, 130, 141, 143, 188, 208, 215, 262
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 32, 207
MboI GATC 2 cut(s) 30, 205
MboII GAAGA 2 cut(s) 39, 112
MflI RGATCY 1 cut(s) 30
MluCI AATT 2 cut(s) 67, 185
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 48, 66, 101, 152, 154
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 2 cut(s) 150, 309
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 3 cut(s) 168, 199, 284
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 106, 137, 154
NdeII GATC 2 cut(s) 30, 205
NmuCI GTSAC 1 cut(s) 251
PctI GAATGC 3 cut(s) 168, 199, 284
PdmI GAANNNNTTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 30
SaqAI TTAA 2 cut(s) 150, 309
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 30, 205
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 203
SetI ASST 5 cut(s) 19, 40, 81, 227, 279
SmlI CTYRAG 2 cut(s) 92, 149
SmoI CTYRAG 2 cut(s) 92, 149
Sse9I AATT 2 cut(s) 67, 185
SsiI CCGC 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 114, 178
TasI AATT 2 cut(s) 67, 185
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 150, 309
Tru9I TTAA 2 cut(s) 150, 309
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
Vha464I CTTAAG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.