Rmu_sc0004048.1_g000008

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004048.1
OG0000508
Physical Location & Seq
Forward (+)
35122 .. 36578
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004048.1_g000008.1.cds

Sequence Viewer

Length: 807 bp
atggcctcctccccagttccaaagtacgaggtcttcttgagcagctctagcaaggatgcagacaatttttcataccttttacacaaaggtttggaggataaaggaattctcactctcagaagcaaccaagaggttgagggaggaggcacagcttccctagacgtaatcagacaatcgtggtcggccatagtcattatctcgccagactatgcttcttccccttggctcctgcaacaacttgtacagattcttcaagcaaataatctatatggtatgaaagttttaccagtttttcaccttgtcaatccctccgatgtccgacaccaaaggggaaccattggggaaagcctgaagaagcacgtacaataccaggtcgaagagataaacagatggaggcaagctttggcaacggtggcaaatttcagtggatcgaatactggggacgccaagaatcaaacacgggttattaaagaaatcgaggaatacgtcttgaaacgcataccacgctccagtgaggaaaagggccaccactccagccacccaaaccggtcttcgcaggccaacaacaaccaggggattcccagacacacctccgccccgcccctaaacaccattacatcgactgtggtacccctgcctgactccaagcaatctagatccaaagaaacccggcgccggtccttaaatgccatccgcctcaaaaacatgatctctaacatcccaactcaaaaatctaagagcctaggctgcccatgctcatcaccatcaccaaacaatgatccaatcacatcccgagatccaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

268

Amino Acids

29.71

Weight (kDa)

9.69

Isoelectric Point (pI)

66.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000508)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06570 FvH4_2g06640 FvH4_2g14130 FvH4_2g14140 FvH4_2g14140 FvH4_2g36090 FvH4_2g36090 FvH4_2g36100
malus_domestica MD11G1218200.v1.1 MD15G1057100.v1.1 MD15G1057200.v1.1
prunus_persica Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.1G197200_v2.0.a1 Prupe.4G127700_v2.0.a1 Prupe.5G011700_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G011800_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012300_v2.0.a1 Prupe.5G012400_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012500_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.5G012700_v2.0.a1 Prupe.8G119700_v2.0.a1 Prupe.8G119700_v2.0.a1
pyrus_communis pycom02g13080 pycom05g07020 pycom15g05370 pycom15g05380
rosa_chinensis RchiOBHm_Chr1g0372601 RchiOBHm_Chr6g0258611 RchiOBHm_Chr6g0276221 RchiOBHm_Chr6g0276231 RchiOBHm_Chr6g0276251 RchiOBHm_Chr6g0276271 RchiOBHm_Chr6g0276281 RchiOBHm_Chr6g0276291
rosa_laevigata RLG00000013406 RLG00000013407 RLG00000013408 RLG00000013617
rosa_multiflora Rmu_sc0001663.1_g000017 Rmu_sc0003665.1_g000003 Rmu_sc0004048.1_g000003 Rmu_sc0004048.1_g000006 Rmu_sc0004048.1_g000008 Rmu_sc0004049.1_g000006 Rmu_sc0004049.1_g000008 Rmu_sc0004049.1_g000010 Rmu_ssc0000213.1_g000005
rosa_roxburghii Rroxscaffold_178G00437490 Rroxscaffold_7G00192430 Rroxscaffold_7G00192440 Rroxscaffold_7G00192480 Rroxscaffold_7G00205750
rosa_rugosa Rorug05G0581900 Rorug05G0582500 Rorug06G0074900 Rorug06G0099400 Rorug06G0099600
rosa_samantha Rh6AG098600 Rh6AG190000 Rh6AG210800 Rh6AG210900 Rh6BG090400 Rh6BG193400 Rh6BG215000 Rh6BG215100 Rh6CG087300 Rh6DG081500 Rh6DG184600 Rh6DG207700
rosa_wichuraiana Rw6G008540 Rw6G018370 Rw6G018380 Rw6G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 628
AccB1I GGYRCC 2 cut(s) 628, 672
AciI CCGC 3 cut(s) 594, 599, 694
AclWI GGATC 4 cut(s) 436, 651, 773, 791
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 2 cut(s) 105, 418
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 2 cut(s) 444, 673
AfaI GTAC 4 cut(s) 26, 243, 363, 630
AfiI CCNNNNNNNGG 1 cut(s) 675
AgeI ACCGGT 1 cut(s) 546
AgsI TTSAA 2 cut(s) 254, 493
AjnI CCWGG 2 cut(s) 369, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AluBI AGCT 3 cut(s) 45, 152, 401
AluI AGCT 3 cut(s) 45, 152, 401
AlwI GGATC 4 cut(s) 436, 651, 773, 791
Ama87I CYCGRG 1 cut(s) 792
AoxI GGCC 4 cut(s) 3, 183, 523, 558
ApeKI GCWGC 2 cut(s) 42, 747
ApoI RAATTY 2 cut(s) 105, 418
AsiGI ACCGGT 1 cut(s) 546
Asp718I GGTACC 1 cut(s) 628
AspA2I CCTAGG 1 cut(s) 742
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 2 cut(s) 523, 678
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 3 cut(s) 287, 753, 759
AvaI CYCGRG 1 cut(s) 792
AvaII GGWCC 1 cut(s) 678
AvrII CCTAGG 1 cut(s) 742
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BanI GGYRCC 2 cut(s) 628, 672
BarI GAAGNNNNNNTAC 4 cut(s) 17, 49, 234, 266
BbsI GAAGAC 2 cut(s) 25, 543
BbvI GCAGC 2 cut(s) 54, 734
BccI CCATC 3 cut(s) 384, 698, 772
BciT130I CCWGG 2 cut(s) 371, 572
BcnI CCSGG 1 cut(s) 670
BfaI CTAG 4 cut(s) 48, 158, 654, 743
BfoI RGCGCY 1 cut(s) 676
BisI GCNGC 2 cut(s) 43, 748
BlnI CCTAGG 1 cut(s) 742
BlsI GCNGC 2 cut(s) 44, 749
Bme1390I CCNGG 3 cut(s) 371, 572, 670
Bme18I GGWCC 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 792
BmgT120I GGNCC 2 cut(s) 523, 678
BmiI GGNNCC 4 cut(s) 227, 334, 630, 674
BmrFI CCNGG 3 cut(s) 371, 572, 670
BmrI ACTGGG 2 cut(s) 8, 447
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 2 cut(s) 8, 447
BpiI GAAGAC 2 cut(s) 25, 543
BpmI CTGGAG 2 cut(s) 493, 517
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 670
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 2 cut(s) 444, 673
BsaJI CCNNGG 3 cut(s) 221, 571, 742
BsaWI WCCGGW 1 cut(s) 546
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 2 cut(s) 546, 675
Bse1I ACTGG 4 cut(s) 14, 287, 442, 510
BseBI CCWGG 2 cut(s) 371, 572
BseDI CCNNGG 3 cut(s) 221, 571, 742
BseGI GGATG 4 cut(s) 61, 690, 717, 788
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 4 cut(s) 14, 287, 442, 510
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 54, 734
BshFI GGCC 4 cut(s) 5, 185, 525, 560
BshNI GGYRCC 2 cut(s) 628, 672
BshTI ACCGGT 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 792
BsiSI CCGG 3 cut(s) 547, 670, 676
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 4 cut(s) 5, 185, 525, 560
BsoBI CYCGRG 1 cut(s) 792
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 5 cut(s) 428, 656, 708, 778, 796
BspACI CCGC 3 cut(s) 594, 599, 694
BspANI GGCC 4 cut(s) 5, 185, 525, 560
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 4 cut(s) 227, 334, 630, 674
BspPI GGATC 4 cut(s) 436, 651, 773, 791
BspT107I GGYRCC 2 cut(s) 628, 672
BsrFI RCCGGY 2 cut(s) 546, 675
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 4 cut(s) 14, 287, 442, 510
BssAI RCCGGY 2 cut(s) 546, 675
BssECI CCNNGG 3 cut(s) 221, 571, 742
BssMI GATC 5 cut(s) 428, 656, 708, 778, 796
BssNI GRCGYC 2 cut(s) 444, 673
BssT1I CCWWGG 2 cut(s) 221, 742
Bst2UI CCWGG 2 cut(s) 371, 572
Bst4CI ACNGT 2 cut(s) 412, 625
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 2 cut(s) 444, 673
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 399, 558
BstDEI CTNAG 2 cut(s) 116, 735
BstF5I GGATG 4 cut(s) 61, 690, 717, 788
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 5 cut(s) 431, 659, 711, 781, 799
BstMBI GATC 5 cut(s) 428, 656, 708, 778, 796
BstMWI GCNNNNNNNGC 5 cut(s) 48, 413, 504, 747, 753
BstNI CCWGG 2 cut(s) 371, 572
BstSCI CCNGG 3 cut(s) 369, 570, 668
BstV1I GCAGC 2 cut(s) 54, 734
BstV2I GAAGAC 2 cut(s) 25, 543
BstX2I RGATCY 2 cut(s) 656, 796
BstYI RGATCY 2 cut(s) 656, 796
BsuRI GGCC 4 cut(s) 5, 185, 525, 560
BtsCI GGATG 4 cut(s) 61, 690, 717, 788
BtsIMutI CAGTG 2 cut(s) 430, 517
Cac8I GCNNGC 2 cut(s) 399, 558
CfoI GCGC 1 cut(s) 675
Cfr10I RCCGGY 2 cut(s) 546, 675
Cfr13I GGNCC 2 cut(s) 523, 678
CseI GACGC 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 4 cut(s) 25, 242, 362, 629
CspAI ACCGGT 1 cut(s) 546
CviAII CATG 3 cut(s) 706, 753, 804
CviQI GTAC 4 cut(s) 25, 242, 362, 629
DdeI CTNAG 2 cut(s) 116, 735
DinI GGCGCC 1 cut(s) 674
DpnI GATC 5 cut(s) 430, 658, 710, 780, 798
DpnII GATC 5 cut(s) 428, 656, 708, 778, 796
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 2 cut(s) 583, 683
Eco130I CCWWGG 2 cut(s) 221, 742
Eco47I GGWCC 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 792
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 369, 570
EcoT14I CCWWGG 2 cut(s) 221, 742
EgeI GGCGCC 1 cut(s) 674
EheI GGCGCC 1 cut(s) 674
ErhI CCWWGG 2 cut(s) 221, 742
FaeI CATG 3 cut(s) 709, 756, 807
FaqI GGGAC 1 cut(s) 455
FatI CATG 3 cut(s) 705, 752, 803
FauI CCCGC 1 cut(s) 606
Fnu4HI GCNGC 2 cut(s) 43, 748
FokI GGATG 4 cut(s) 68, 677, 704, 775
Fsp4HI GCNGC 2 cut(s) 43, 748
FspBI CTAG 4 cut(s) 48, 158, 654, 743
GlaI GCGC 1 cut(s) 674
GluI GCNGC 2 cut(s) 43, 748
GsuI CTGGAG 2 cut(s) 493, 517
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 4 cut(s) 5, 185, 525, 560
HapII CCGG 3 cut(s) 547, 670, 676
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 675
Hin1I GRCGYC 2 cut(s) 444, 673
Hin1II CATG 3 cut(s) 709, 756, 807
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 4 cut(s) 247, 451, 577, 641
HpaII CCGG 3 cut(s) 547, 670, 676
HphI GGTGA 3 cut(s) 287, 753, 759
Hpy188I TCNGA 4 cut(s) 119, 170, 313, 320
Hpy188III TCNNGA 4 cut(s) 37, 490, 654, 792
HpyCH4III ACNGT 2 cut(s) 412, 625
HpyCH4IV ACGT 3 cut(s) 162, 360, 486
HpyCH4V TGCA 2 cut(s) 59, 232
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 413, 504, 747, 753
HpyF3I CTNAG 2 cut(s) 116, 735
HpySE526I ACGT 3 cut(s) 162, 360, 486
Hsp92I GRCGYC 2 cut(s) 444, 673
Hsp92II CATG 3 cut(s) 709, 756, 807
HspAI GCGC 1 cut(s) 673
KasI GGCGCC 1 cut(s) 672
KpnI GGTACC 1 cut(s) 632
Kzo9I GATC 5 cut(s) 428, 656, 708, 778, 796
LmnI GCTCC 2 cut(s) 231, 512
Lsp1109I GCAGC 2 cut(s) 54, 734
LweI GCATC 1 cut(s) 46
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 4 cut(s) 48, 158, 654, 743
MaeII ACGT 3 cut(s) 162, 360, 486
MalI GATC 5 cut(s) 430, 658, 710, 780, 798
MboI GATC 5 cut(s) 428, 656, 708, 778, 796
MboII GAAGA 6 cut(s) 25, 207, 242, 364, 389, 543
MflI RGATCY 2 cut(s) 656, 796
MluCI AATT 3 cut(s) 64, 105, 418
Mly113I GGCGCC 1 cut(s) 673
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 343
MseI TTAA 2 cut(s) 468, 683
MspI CCGG 3 cut(s) 547, 670, 676
MspR9I CCNGG 3 cut(s) 371, 572, 670
MvaI CCWGG 2 cut(s) 371, 572
MwoI GCNNNNNNNGC 5 cut(s) 48, 413, 504, 747, 753
NarI GGCGCC 1 cut(s) 673
NciI CCSGG 1 cut(s) 670
NdeII GATC 5 cut(s) 428, 656, 708, 778, 796
NlaIII CATG 3 cut(s) 709, 756, 807
NlaIV GGNNCC 4 cut(s) 227, 334, 630, 674
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 3 cut(s) 247, 451, 577
PinAI ACCGGT 1 cut(s) 546
PkrI GCNGC 2 cut(s) 44, 749
PleI GAGTC 1 cut(s) 635
PluTI GGCGCC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 635
Ppu21I YACGTR 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 369, 570
PspGI CCWGG 2 cut(s) 369, 570
PspN4I GGNNCC 4 cut(s) 227, 334, 630, 674
PspPI GGNCC 2 cut(s) 523, 678
PsuI RGATCY 2 cut(s) 656, 796
RsaI GTAC 4 cut(s) 26, 243, 363, 630
RsaNI GTAC 4 cut(s) 25, 242, 362, 629
SaqAI TTAA 2 cut(s) 468, 683
SatI GCNGC 2 cut(s) 43, 748
Sau3AI GATC 5 cut(s) 428, 656, 708, 778, 796
Sau96I GGNCC 2 cut(s) 523, 678
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 3 cut(s) 371, 572, 670
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 1 cut(s) 46
SfoI GGCGCC 1 cut(s) 674
SinI GGWCC 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 64, 105, 418
SsiI CCGC 3 cut(s) 594, 599, 694
SspDI GGCGCC 1 cut(s) 672
SspMI CTAG 4 cut(s) 48, 158, 654, 743
StyD4I CCNGG 3 cut(s) 369, 570, 668
StyI CCWWGG 2 cut(s) 221, 742
TaaI ACNGT 2 cut(s) 412, 625
TaiI ACGT 3 cut(s) 165, 363, 489
TaqI TCGA 4 cut(s) 375, 431, 477, 620
TasI AATT 3 cut(s) 64, 105, 418
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 3 cut(s) 247, 451, 577
Tru1I TTAA 2 cut(s) 468, 683
Tru9I TTAA 2 cut(s) 468, 683
TscAI CASTG 2 cut(s) 430, 517
TseI GCWGC 2 cut(s) 42, 747
TspDTI ATGAA 2 cut(s) 60, 290
TspRI CASTG 2 cut(s) 430, 517
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 2 cut(s) 105, 418
XbaI TCTAGA 1 cut(s) 653
XmaJI CCTAGG 1 cut(s) 742
XspI CTAG 4 cut(s) 48, 158, 654, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.